Wall clock time and date at job start Tue Mar 31 2020 14:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47587 * 2 1 4 4 C 1.53001 * 109.47057 * 239.99941 * 2 1 3 5 5 C 1.52998 * 109.47459 * 185.64421 * 4 2 1 6 6 H 1.09006 * 109.47003 * 305.58203 * 5 4 2 7 7 N 1.46499 * 109.47196 * 185.58424 * 5 4 2 8 8 S 1.65596 * 120.00528 * 96.52748 * 7 5 4 9 9 O 1.42101 * 104.28082 * 180.32566 * 8 7 5 10 10 O 1.42105 * 104.27532 * 308.18642 * 8 7 5 11 11 C 1.81402 * 104.44820 * 64.25452 * 8 7 5 12 12 C 1.52999 * 109.46970 * 180.02562 * 11 8 7 13 13 C 1.50707 * 109.46992 * 179.97438 * 12 11 8 14 14 H 1.07994 * 120.00266 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99871 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00060 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00049 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47435 * 59.99400 * 17 15 13 19 19 H 1.48492 * 109.47316 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46689 * 299.99954 * 17 15 13 21 21 C 1.50696 * 109.47133 * 65.58023 * 5 4 2 22 22 C 1.38234 * 120.00078 * 79.73266 * 21 5 4 23 23 C 1.38238 * 119.99998 * 179.81488 * 22 21 5 24 24 C 1.38231 * 119.99692 * 0.38502 * 23 22 21 25 25 C 1.38227 * 120.00340 * 359.86685 * 24 23 22 26 26 C 1.38229 * 120.00091 * 359.95223 * 25 24 23 27 27 H 1.09007 * 109.46748 * 59.99485 * 1 2 3 28 28 H 1.08998 * 109.47205 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46619 * 300.00311 * 1 2 3 30 30 H 1.08999 * 109.46947 * 120.00737 * 2 1 3 31 31 H 1.08999 * 109.46869 * 54.50174 * 3 2 1 32 32 H 1.08998 * 109.46945 * 174.50185 * 3 2 1 33 33 H 1.09002 * 109.46932 * 294.50362 * 3 2 1 34 34 H 1.09003 * 109.47100 * 305.64255 * 4 2 1 35 35 H 1.09002 * 109.47157 * 65.64029 * 4 2 1 36 36 H 0.97003 * 119.99567 * 276.52064 * 7 5 4 37 37 H 1.09001 * 109.47500 * 300.00300 * 11 8 7 38 38 H 1.08996 * 109.47042 * 60.00499 * 11 8 7 39 39 H 1.08999 * 109.47556 * 299.99777 * 12 11 8 40 40 H 1.09001 * 109.47282 * 60.00626 * 12 11 8 41 41 H 0.97000 * 119.99532 * 179.97438 * 16 15 13 42 42 H 1.08006 * 120.00011 * 359.97438 * 22 21 5 43 43 H 1.07997 * 119.99654 * 180.22846 * 23 22 21 44 44 H 1.08001 * 119.99492 * 179.83767 * 24 23 22 45 45 H 1.08006 * 120.00189 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.00418 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5634 -0.8453 -1.1804 6 1 4.0018 0.1411 -1.0288 7 7 4.0641 -1.4148 -2.4339 8 16 4.6309 -0.4178 -3.6284 9 8 5.0150 -1.3033 -4.6712 10 8 3.5886 0.5294 -3.8181 11 6 6.0891 0.3780 -2.8997 12 6 6.7097 1.3361 -3.9184 13 6 7.9208 1.9976 -3.3127 14 1 8.2184 1.7584 -2.3025 15 6 8.6496 2.9076 -4.0488 16 7 8.2882 3.1979 -5.2796 17 14 10.1512 3.7271 -3.2984 18 1 11.1458 2.6901 -2.9237 19 1 10.7536 4.6571 -4.2871 20 1 9.7476 4.4862 -2.0876 21 6 3.9427 -1.7454 -0.0328 22 6 3.8668 -3.1181 -0.1766 23 6 4.2184 -3.9437 0.8748 24 6 4.6384 -3.3965 2.0727 25 6 4.7094 -2.0237 2.2183 26 6 4.3613 -1.1981 1.1656 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5986 1.9839 0.8367 32 1 3.1256 1.4439 0.0985 33 1 1.7594 1.9271 -0.9351 34 1 1.5965 -1.7156 -1.3012 35 1 1.7615 -0.1524 -2.1364 36 1 4.0637 -2.3761 -2.5641 37 1 5.7929 0.9352 -2.0109 38 1 6.8191 -0.3833 -2.6247 39 1 7.0059 0.7793 -4.8074 40 1 5.9796 2.0974 -4.1929 41 1 8.8008 3.8384 -5.7972 42 1 3.5351 -3.5456 -1.1114 43 1 4.1626 -5.0163 0.7612 44 1 4.9106 -4.0415 2.8950 45 1 5.0371 -1.5961 3.1544 46 1 4.4172 -0.1256 1.2792 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111325651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:50 Heat of formation + Delta-G solvation = -77.529061 kcal Electronic energy + Delta-G solvation = -26215.215595 eV Core-core repulsion = 22616.774730 eV Total energy + Delta-G solvation = -3598.440865 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.93859 -37.25455 -36.49455 -35.42876 -34.62996 -33.89370 -31.22223 -31.14072 -30.80979 -28.15310 -27.21508 -25.60823 -23.96565 -22.81385 -21.64136 -21.39632 -19.75368 -18.93206 -17.78456 -17.13375 -16.41327 -16.03026 -15.51809 -15.37991 -15.19598 -14.94869 -14.58374 -14.49679 -14.12256 -13.76236 -13.50411 -13.43045 -13.09990 -12.61516 -12.52507 -12.35055 -12.19970 -11.99718 -11.75772 -11.69800 -11.56821 -11.49034 -11.33082 -11.22799 -11.06696 -10.97001 -10.94242 -10.68782 -10.52319 -10.41522 -10.36045 -9.81033 -9.51996 -9.07073 -9.06028 -8.84026 -8.49796 -6.12100 -4.17674 0.77529 1.18799 1.24654 3.11150 3.27253 3.32156 3.33933 3.63988 4.21176 4.37087 4.47315 4.55334 4.74376 4.82593 4.84758 4.86844 4.90178 4.96768 5.03912 5.23061 5.30327 5.32780 5.41449 5.52024 5.58263 5.64386 5.66327 5.70915 5.76571 5.83870 5.84631 5.87107 6.00426 6.06269 6.12591 6.26043 6.29446 6.35753 6.41484 6.46942 6.51344 6.82979 7.07366 7.29947 7.36233 7.80697 8.17767 8.85417 9.47007 10.98922 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011739 B = 0.003770 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.644754 B = 7425.964077 C = 7958.752510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.156 4.156 4 C -0.128 4.128 5 C 0.192 3.808 6 H 0.095 0.905 7 N -1.122 6.122 8 S 2.590 3.410 9 O -0.967 6.967 10 O -0.962 6.962 11 C -0.590 4.590 12 C 0.029 3.971 13 C -0.520 4.520 14 H 0.061 0.939 15 C 0.059 3.941 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.080 4.080 22 C -0.110 4.110 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.110 4.110 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.411 0.589 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.266 0.734 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.536 -11.536 15.507 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.213 4.213 4 C -0.167 4.167 5 C 0.085 3.915 6 H 0.113 0.887 7 N -0.877 5.877 8 S 2.687 3.313 9 O -0.958 6.958 10 O -0.952 6.952 11 C -0.723 4.723 12 C -0.010 4.010 13 C -0.560 4.560 14 H 0.079 0.921 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.082 4.082 22 C -0.128 4.128 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.135 4.135 26 C -0.128 4.128 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.245 0.755 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.918 -11.147 14.473 22.374 hybrid contribution 1.348 0.056 0.896 1.620 sum -11.569 -11.091 15.369 22.206 Atomic orbital electron populations 1.21817 0.95224 1.01449 1.01785 1.21118 0.95783 0.96509 0.98141 1.21969 1.01087 0.95833 1.02403 1.22200 0.93607 1.01532 0.99410 1.19724 0.94931 0.95532 0.81314 0.88721 1.55998 1.80019 1.20533 1.31194 1.05667 0.77224 0.74441 0.73945 1.93554 1.84823 1.64116 1.53279 1.93547 1.53783 1.63463 1.84410 1.30455 1.17226 1.12161 1.12503 1.18954 0.97060 0.92811 0.92178 1.20959 1.10576 1.24323 1.00131 0.92113 1.25059 0.97910 0.96573 0.94874 1.69946 1.39918 1.33913 1.09069 0.86537 0.82582 0.79287 0.78915 1.20083 1.21059 1.20079 1.19974 0.99011 0.94215 0.94976 1.20920 1.00048 0.92940 0.98923 1.21117 0.99444 0.99695 0.93390 1.21146 1.00138 0.95237 0.97638 1.21130 0.99847 0.93679 0.98846 1.21077 0.98843 1.00174 0.92737 0.92489 0.92965 0.92832 0.90893 0.92729 0.92561 0.91790 0.91437 0.89470 0.75480 0.86469 0.86065 0.94873 0.94798 0.92475 0.86092 0.86128 0.86278 0.86010 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.19 37.16 0.34 -0.94 16 2 C -0.10 -0.94 2.77 -90.62 -0.25 -1.19 16 3 C -0.16 -1.59 8.83 37.16 0.33 -1.26 16 4 C -0.13 -1.43 4.45 -26.73 -0.12 -1.55 16 5 C 0.19 2.27 2.24 -69.09 -0.15 2.11 16 6 H 0.09 1.13 5.29 -51.93 -0.27 0.85 16 7 N -1.12 -14.68 5.30 -5.88 -0.03 -14.71 16 8 S 2.59 46.16 5.37 -107.50 -0.58 45.59 16 9 O -0.97 -20.19 18.08 -57.54 -1.04 -21.23 16 10 O -0.96 -19.36 17.23 -57.54 -0.99 -20.35 16 11 C -0.59 -11.32 5.88 37.16 0.22 -11.11 16 12 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 13 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 17 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 C -0.08 -0.85 4.25 -104.62 -0.44 -1.30 16 22 C -0.11 -1.08 9.16 -39.58 -0.36 -1.44 16 23 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 24 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 25 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 26 C -0.11 -1.10 8.61 -39.58 -0.34 -1.44 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.68 6.45 -51.93 -0.33 0.35 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.56 6.55 -51.93 -0.34 0.22 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 35 H 0.09 1.14 7.53 -51.93 -0.39 0.75 16 36 H 0.41 4.57 7.08 -34.47 -0.24 4.33 16 37 H 0.12 1.99 7.42 -51.92 -0.39 1.61 16 38 H 0.12 2.14 8.14 -51.93 -0.42 1.72 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.12 1.04 6.83 -52.48 -0.36 0.68 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 46 H 0.13 1.12 7.85 -52.49 -0.41 0.70 16 LS Contribution 383.67 15.07 5.78 5.78 Total: -1.00 -34.21 383.67 -11.02 -45.23 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.35 Total: 4.28 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: -2.53 Total: -35.02 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.71 Total: -40.44 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -2.03 Total: -41.58 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 46.16 SS G_CDS: -0.58 Total: 45.59 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.21 -11.02 -45.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111325651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.296 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds