Wall clock time and date at job start Tue Mar 31 2020 14:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47587 * 2 1 4 4 C 1.53001 * 109.47057 * 239.99941 * 2 1 3 5 5 C 1.52998 * 109.47459 * 185.64421 * 4 2 1 6 6 H 1.09006 * 109.47003 * 305.58203 * 5 4 2 7 7 N 1.46499 * 109.47196 * 185.58424 * 5 4 2 8 8 S 1.65596 * 120.00528 * 96.52748 * 7 5 4 9 9 O 1.42101 * 104.28082 * 180.32566 * 8 7 5 10 10 O 1.42105 * 104.27532 * 308.18642 * 8 7 5 11 11 C 1.81402 * 104.44820 * 64.25452 * 8 7 5 12 12 C 1.52999 * 109.46970 * 180.02562 * 11 8 7 13 13 C 1.50707 * 109.46992 * 179.97438 * 12 11 8 14 14 H 1.07994 * 120.00266 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99871 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00060 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00049 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47435 * 59.99400 * 17 15 13 19 19 H 1.48492 * 109.47316 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46689 * 299.99954 * 17 15 13 21 21 C 1.50696 * 109.47133 * 65.58023 * 5 4 2 22 22 C 1.38234 * 120.00078 * 79.73266 * 21 5 4 23 23 C 1.38238 * 119.99998 * 179.81488 * 22 21 5 24 24 C 1.38231 * 119.99692 * 0.38502 * 23 22 21 25 25 C 1.38227 * 120.00340 * 359.86685 * 24 23 22 26 26 C 1.38229 * 120.00091 * 359.95223 * 25 24 23 27 27 H 1.09007 * 109.46748 * 59.99485 * 1 2 3 28 28 H 1.08998 * 109.47205 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46619 * 300.00311 * 1 2 3 30 30 H 1.08999 * 109.46947 * 120.00737 * 2 1 3 31 31 H 1.08999 * 109.46869 * 54.50174 * 3 2 1 32 32 H 1.08998 * 109.46945 * 174.50185 * 3 2 1 33 33 H 1.09002 * 109.46932 * 294.50362 * 3 2 1 34 34 H 1.09003 * 109.47100 * 305.64255 * 4 2 1 35 35 H 1.09002 * 109.47157 * 65.64029 * 4 2 1 36 36 H 0.97003 * 119.99567 * 276.52064 * 7 5 4 37 37 H 1.09001 * 109.47500 * 300.00300 * 11 8 7 38 38 H 1.08996 * 109.47042 * 60.00499 * 11 8 7 39 39 H 1.08999 * 109.47556 * 299.99777 * 12 11 8 40 40 H 1.09001 * 109.47282 * 60.00626 * 12 11 8 41 41 H 0.97000 * 119.99532 * 179.97438 * 16 15 13 42 42 H 1.08006 * 120.00011 * 359.97438 * 22 21 5 43 43 H 1.07997 * 119.99654 * 180.22846 * 23 22 21 44 44 H 1.08001 * 119.99492 * 179.83767 * 24 23 22 45 45 H 1.08006 * 120.00189 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.00418 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5634 -0.8453 -1.1804 6 1 4.0018 0.1411 -1.0288 7 7 4.0641 -1.4148 -2.4339 8 16 4.6309 -0.4178 -3.6284 9 8 5.0150 -1.3033 -4.6712 10 8 3.5886 0.5294 -3.8181 11 6 6.0891 0.3780 -2.8997 12 6 6.7097 1.3361 -3.9184 13 6 7.9208 1.9976 -3.3127 14 1 8.2184 1.7584 -2.3025 15 6 8.6496 2.9076 -4.0488 16 7 8.2882 3.1979 -5.2796 17 14 10.1512 3.7271 -3.2984 18 1 11.1458 2.6901 -2.9237 19 1 10.7536 4.6571 -4.2871 20 1 9.7476 4.4862 -2.0876 21 6 3.9427 -1.7454 -0.0328 22 6 3.8668 -3.1181 -0.1766 23 6 4.2184 -3.9437 0.8748 24 6 4.6384 -3.3965 2.0727 25 6 4.7094 -2.0237 2.2183 26 6 4.3613 -1.1981 1.1656 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5986 1.9839 0.8367 32 1 3.1256 1.4439 0.0985 33 1 1.7594 1.9271 -0.9351 34 1 1.5965 -1.7156 -1.3012 35 1 1.7615 -0.1524 -2.1364 36 1 4.0637 -2.3761 -2.5641 37 1 5.7929 0.9352 -2.0109 38 1 6.8191 -0.3833 -2.6247 39 1 7.0059 0.7793 -4.8074 40 1 5.9796 2.0974 -4.1929 41 1 8.8008 3.8384 -5.7972 42 1 3.5351 -3.5456 -1.1114 43 1 4.1626 -5.0163 0.7612 44 1 4.9106 -4.0415 2.8950 45 1 5.0371 -1.5961 3.1544 46 1 4.4172 -0.1256 1.2792 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111325651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:50 Heat of formation + Delta-G solvation = -99.203708 kcal Electronic energy + Delta-G solvation = -26216.155478 eV Core-core repulsion = 22616.774730 eV Total energy + Delta-G solvation = -3599.380748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.71010 -38.29129 -37.85701 -37.01333 -35.90335 -35.57269 -33.14166 -31.94328 -31.58399 -29.01119 -27.99710 -27.60011 -24.79709 -23.76084 -23.33836 -22.19229 -20.58948 -20.28768 -19.19511 -18.58226 -17.85381 -17.06628 -17.04227 -16.53824 -16.28214 -16.19669 -16.01140 -15.36891 -15.13738 -14.94059 -14.57505 -14.44350 -14.14650 -13.95440 -13.73099 -13.44949 -13.28751 -13.23478 -13.13653 -13.03760 -12.93194 -12.90073 -12.80675 -12.53592 -12.27065 -12.20215 -12.08302 -11.90514 -11.76497 -11.75085 -11.48576 -11.35047 -11.17992 -10.63798 -10.42216 -9.74795 -9.58905 -8.25752 -6.39852 -0.71247 0.46494 0.56254 1.40791 1.44185 1.52394 1.80853 2.38123 2.75749 2.93891 3.07627 3.23667 3.58687 3.81354 3.93227 4.00317 4.06936 4.11805 4.13220 4.20819 4.24164 4.35953 4.49864 4.54973 4.68801 4.73618 4.78943 4.83420 4.90277 4.95741 5.05896 5.09698 5.16082 5.18611 5.24295 5.26280 5.27549 5.35823 5.46529 5.57894 5.63773 5.68001 5.69099 5.73747 6.05450 6.07451 6.16350 6.73195 7.30270 8.86361 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011739 B = 0.003770 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.644754 B = 7425.964077 C = 7958.752510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.159 4.159 4 C -0.128 4.128 5 C 0.187 3.813 6 H 0.092 0.908 7 N -1.102 6.102 8 S 2.617 3.383 9 O -0.999 6.999 10 O -0.987 6.987 11 C -0.590 4.590 12 C 0.022 3.978 13 C -0.539 4.539 14 H 0.075 0.925 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.973 3.027 18 H -0.264 1.264 19 H -0.284 1.284 20 H -0.262 1.262 21 C -0.090 4.090 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.121 4.121 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.423 0.577 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.005 0.995 40 H 0.009 0.991 41 H 0.267 0.733 42 H 0.129 0.871 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.195 -12.613 18.488 25.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.216 4.216 4 C -0.167 4.167 5 C 0.081 3.919 6 H 0.110 0.890 7 N -0.863 5.863 8 S 2.713 3.287 9 O -0.989 6.989 10 O -0.977 6.977 11 C -0.722 4.722 12 C -0.017 4.017 13 C -0.578 4.578 14 H 0.093 0.907 15 C -0.201 4.201 16 N -0.573 5.573 17 Si 0.796 3.204 18 H -0.189 1.189 19 H -0.209 1.209 20 H -0.187 1.187 21 C -0.092 4.092 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.141 4.141 26 C -0.139 4.139 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.260 0.740 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.023 0.977 40 H 0.027 0.973 41 H 0.076 0.924 42 H 0.147 0.853 43 H 0.157 0.843 44 H 0.158 0.842 45 H 0.158 0.842 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.574 -12.236 17.463 24.755 hybrid contribution 1.176 0.321 0.023 1.219 sum -11.398 -11.915 17.486 24.035 Atomic orbital electron populations 1.21816 0.94466 1.01990 1.01946 1.21084 0.96382 0.95917 0.97610 1.22006 1.01260 0.96339 1.02044 1.22180 0.93303 1.01961 0.99233 1.19895 0.95281 0.95834 0.80924 0.88994 1.55514 1.79149 1.20635 1.30992 1.04587 0.76312 0.73934 0.73826 1.93504 1.85209 1.64834 1.55369 1.93517 1.54311 1.64751 1.85076 1.30357 1.18368 1.11807 1.11647 1.18806 0.96655 0.93237 0.92972 1.21466 1.11153 1.24376 1.00832 0.90701 1.26100 1.01401 0.97339 0.95239 1.70096 1.41600 1.34846 1.10781 0.85384 0.78411 0.78335 0.78258 1.18870 1.20927 1.18668 1.19839 1.00415 0.94318 0.94638 1.21107 1.00303 0.92801 0.99752 1.21401 0.98881 1.00703 0.93187 1.21481 0.99228 0.95492 0.98183 1.21401 0.99432 0.93950 0.99287 1.21238 0.99029 1.00800 0.92849 0.93330 0.92246 0.91697 0.89927 0.91294 0.92577 0.93584 0.90368 0.91802 0.73969 0.84190 0.84243 0.97653 0.97303 0.92379 0.85330 0.84254 0.84165 0.84243 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.19 71.98 0.66 -1.70 16 2 C -0.09 -1.66 2.77 -10.79 -0.03 -1.69 16 3 C -0.16 -3.15 8.83 71.98 0.64 -2.51 16 4 C -0.13 -2.76 4.45 30.59 0.14 -2.63 16 5 C 0.19 4.23 2.24 44.24 0.10 4.33 16 6 H 0.09 2.12 5.29 -2.38 -0.01 2.10 16 7 N -1.10 -28.04 5.30 -172.53 -0.91 -28.96 16 8 S 2.62 94.47 5.37 -56.49 -0.30 94.17 16 9 O -1.00 -42.41 18.08 -127.65 -2.31 -44.72 16 10 O -0.99 -40.76 17.23 -127.65 -2.20 -42.96 16 11 C -0.59 -22.65 5.88 71.98 0.42 -22.22 16 12 C 0.02 1.17 4.98 29.85 0.15 1.32 16 13 C -0.54 -29.97 9.11 25.60 0.23 -29.74 16 14 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 15 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 16 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 17 Si 0.97 43.24 29.54 68.60 2.03 45.26 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 21 C -0.09 -1.75 4.25 -19.87 -0.08 -1.84 16 22 C -0.12 -2.12 9.16 22.27 0.20 -1.92 16 23 C -0.12 -1.87 10.05 22.27 0.22 -1.65 16 24 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 25 C -0.12 -1.88 10.05 22.26 0.22 -1.66 16 26 C -0.12 -2.15 8.61 22.27 0.19 -1.96 16 27 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.38 6.45 -2.39 -0.02 1.36 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.08 6.55 -2.39 -0.02 1.07 16 33 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.49 8.13 -2.39 -0.02 1.47 16 35 H 0.06 1.69 7.53 -2.39 -0.02 1.67 16 36 H 0.42 8.91 7.08 -96.74 -0.69 8.23 16 37 H 0.14 4.66 7.42 -2.39 -0.02 4.64 16 38 H 0.14 4.80 8.14 -2.39 -0.02 4.78 16 39 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 40 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 42 H 0.13 1.94 6.83 -2.91 -0.02 1.92 16 43 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 46 H 0.13 2.08 7.85 -2.91 -0.02 2.06 16 Total: -1.00 -74.59 383.67 0.61 -73.98 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.28 Total: 24.98 kcal Atomic # 6 Polarization: -68.85 SS G_CDS: 3.75 Total: -65.09 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -0.63 Total: -85.62 kcal Atomic # 8 Polarization: -83.17 SS G_CDS: -4.51 Total: -87.68 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 94.47 SS G_CDS: -0.30 Total: 94.17 kcal Total: -74.59 0.61 -73.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111325651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.228 kcal (2) G-P(sol) polarization free energy of solvation -74.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds