Wall clock time and date at job start Tue Mar 31 2020 14:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47475 * 2 1 4 4 C 1.53003 * 109.47219 * 239.99526 * 2 1 3 5 5 C 1.52998 * 109.47208 * 119.99769 * 2 1 3 6 6 H 1.08997 * 109.47631 * 295.01294 * 5 2 1 7 7 N 1.46497 * 109.47629 * 175.00368 * 5 2 1 8 8 S 1.65595 * 120.00012 * 124.71394 * 7 5 2 9 9 O 1.42098 * 104.28036 * 179.75614 * 8 7 5 10 10 O 1.42097 * 104.28055 * 307.60953 * 8 7 5 11 11 C 1.81400 * 104.45146 * 63.68388 * 8 7 5 12 12 C 1.52999 * 109.47463 * 180.02562 * 11 8 7 13 13 C 1.50698 * 109.47162 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99990 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00059 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99920 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00075 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47105 * 90.00102 * 17 15 13 19 19 H 1.48490 * 109.47085 * 210.00172 * 17 15 13 20 20 H 1.48503 * 109.46973 * 330.00398 * 17 15 13 21 21 C 1.50709 * 109.46995 * 55.00885 * 5 2 1 22 22 C 1.38226 * 120.00099 * 79.72615 * 21 5 2 23 23 C 1.38238 * 120.00275 * 180.34855 * 22 21 5 24 24 C 1.38235 * 119.99594 * 359.88390 * 23 22 21 25 25 C 1.38240 * 119.99968 * 0.08663 * 24 23 22 26 26 C 1.38228 * 119.99890 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.47031 * 300.00309 * 1 2 3 28 28 H 1.09003 * 109.47386 * 60.00111 * 1 2 3 29 29 H 1.08998 * 109.47548 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47553 * 178.19764 * 3 2 1 31 31 H 1.09002 * 109.47151 * 298.19204 * 3 2 1 32 32 H 1.09000 * 109.47414 * 58.19463 * 3 2 1 33 33 H 1.08998 * 109.47118 * 300.00578 * 4 2 1 34 34 H 1.09006 * 109.46888 * 60.00372 * 4 2 1 35 35 H 1.08998 * 109.47297 * 180.02562 * 4 2 1 36 36 H 0.96997 * 120.00103 * 304.72122 * 7 5 2 37 37 H 1.09008 * 109.46632 * 300.00321 * 11 8 7 38 38 H 1.08999 * 109.47186 * 59.99372 * 11 8 7 39 39 H 1.08995 * 109.47158 * 299.99800 * 12 11 8 40 40 H 1.09002 * 109.46949 * 60.00011 * 12 11 8 41 41 H 0.96998 * 120.00057 * 179.97438 * 16 15 13 42 42 H 1.08001 * 120.00287 * 0.27499 * 22 21 5 43 43 H 1.07998 * 120.00537 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.00227 * 180.11351 * 24 23 22 45 45 H 1.08002 * 119.99782 * 180.02562 * 25 24 23 46 46 H 1.08005 * 119.99485 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 2.0399 -0.7212 1.2492 6 1 1.7514 -0.1584 2.1370 7 7 3.5000 -0.8263 1.1907 8 16 4.4228 -0.2391 2.4340 9 8 5.7595 -0.5161 2.0393 10 8 3.9715 1.0974 2.6047 11 6 3.9574 -1.2556 3.8625 12 6 4.7516 -0.8045 5.0900 13 6 4.3644 -1.6486 6.2768 14 1 3.6260 -2.4290 6.1666 15 6 4.9535 -1.4252 7.5033 16 7 5.8531 -0.4752 7.6374 17 14 4.4741 -2.4719 8.9743 18 1 5.3591 -3.6624 9.0442 19 1 4.6189 -1.6737 10.2180 20 1 3.0631 -2.9119 8.8299 21 6 1.4392 -2.1019 1.3126 22 6 1.9678 -3.1217 0.5437 23 6 1.4123 -4.3864 0.5964 24 6 0.3295 -4.6318 1.4200 25 6 -0.1988 -3.6121 2.1894 26 6 0.3560 -2.3472 2.1357 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1295 1.4426 0.0323 31 1 1.7034 1.9468 -0.9058 32 1 1.6505 1.9656 0.8733 33 1 1.6765 -1.7490 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.1299 -0.7218 -1.2490 36 1 3.9261 -1.2397 0.4237 37 1 2.8911 -1.1411 4.0578 38 1 4.1776 -2.3020 3.6511 39 1 5.8178 -0.9187 4.8949 40 1 4.5308 0.2418 5.3012 41 1 6.2673 -0.3178 8.5002 42 1 2.8143 -2.9301 -0.0992 43 1 1.8256 -5.1833 -0.0040 44 1 -0.1035 -5.6203 1.4626 45 1 -1.0446 -3.8040 2.8331 46 1 -0.0571 -1.5504 2.7365 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111328264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:56 Heat of formation + Delta-G solvation = -69.143242 kcal Electronic energy + Delta-G solvation = -26836.846911 eV Core-core repulsion = 23238.769682 eV Total energy + Delta-G solvation = -3598.077228 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.22856 -37.60125 -36.51770 -35.41242 -33.87854 -33.49214 -31.26045 -31.09003 -30.80742 -27.49261 -27.08166 -25.69740 -25.57405 -22.59547 -21.69445 -21.52920 -19.14882 -18.90615 -17.60391 -17.15761 -16.40524 -15.96895 -15.72175 -15.25583 -15.04403 -14.84822 -14.53777 -14.31175 -14.16864 -13.66580 -13.47697 -13.34086 -12.74666 -12.61406 -12.50550 -12.31035 -12.05034 -11.89026 -11.74352 -11.67180 -11.56982 -11.48700 -11.37609 -11.19201 -11.07688 -10.98312 -10.93439 -10.82315 -10.67640 -10.39985 -10.35892 -9.79325 -9.48158 -9.02335 -8.93906 -8.76371 -8.49117 -6.11269 -4.16454 0.80480 1.26980 1.34548 3.13786 3.26659 3.32854 3.35642 3.71545 4.23439 4.38478 4.50426 4.57227 4.69204 4.79129 4.87610 4.93195 4.97624 5.07891 5.15561 5.24043 5.36500 5.39398 5.46422 5.54289 5.64317 5.66339 5.69225 5.74185 5.83255 5.86302 5.88008 5.90668 5.98975 6.03995 6.12334 6.25798 6.38412 6.42134 6.45242 6.51260 6.58571 6.92449 7.08367 7.31511 7.37597 7.82129 8.19323 8.87004 9.48179 10.99859 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.004466 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.525006 B = 6268.193819 C = 7627.265409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.149 4.149 5 C 0.202 3.798 6 H 0.100 0.900 7 N -1.117 6.117 8 S 2.588 3.412 9 O -0.968 6.968 10 O -0.962 6.962 11 C -0.587 4.587 12 C 0.029 3.971 13 C -0.518 4.518 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.891 5.891 17 Si 0.899 3.101 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.090 4.090 22 C -0.104 4.104 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.117 4.117 26 C -0.109 4.109 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.411 0.589 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.032 0.968 40 H 0.033 0.967 41 H 0.265 0.735 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.032 -4.142 -17.700 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.069 4.069 3 C -0.198 4.198 4 C -0.206 4.206 5 C 0.094 3.906 6 H 0.118 0.882 7 N -0.873 5.873 8 S 2.686 3.314 9 O -0.959 6.959 10 O -0.952 6.952 11 C -0.721 4.721 12 C -0.010 4.010 13 C -0.558 4.558 14 H 0.079 0.921 15 C -0.144 4.144 16 N -0.529 5.529 17 Si 0.726 3.274 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.092 4.092 22 C -0.122 4.122 23 C -0.140 4.140 24 C -0.140 4.140 25 C -0.136 4.136 26 C -0.127 4.127 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.246 0.754 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.349 -3.209 -17.525 21.678 hybrid contribution -0.381 -1.369 0.843 1.652 sum -12.730 -4.578 -16.682 21.478 Atomic orbital electron populations 1.21910 0.93939 1.02219 1.01977 1.20745 0.95792 0.95957 0.94369 1.21862 1.02006 0.94206 1.01761 1.22033 1.01115 1.00812 0.96689 1.19688 0.79259 0.92053 0.99620 0.88245 1.55944 1.15069 1.79015 1.37271 1.05701 0.73685 0.76122 0.75913 1.93551 1.34863 1.86173 1.81297 1.93552 1.81822 1.33812 1.86007 1.30439 1.10997 1.14063 1.16551 1.18951 0.94713 0.97942 0.89395 1.20998 1.23907 1.17739 0.93123 0.92074 1.25058 0.94904 0.95395 0.99072 1.69955 1.26939 1.31056 1.24962 0.86487 0.78943 0.80158 0.81812 1.20476 1.21005 1.19761 1.20156 0.96309 0.95608 0.97106 1.20954 0.99732 0.92619 0.98934 1.21123 0.96682 0.96781 0.99411 1.21139 0.96874 0.99009 0.96953 1.21116 1.00172 0.93067 0.99199 1.21061 0.95993 0.97309 0.98351 0.92337 0.92486 0.92077 0.92042 0.92848 0.91898 0.91760 0.92552 0.92445 0.75428 0.86455 0.86162 0.94958 0.94868 0.92557 0.86024 0.86257 0.86380 0.86090 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.93 37.15 0.29 -0.96 16 2 C -0.07 -0.67 0.62 -154.52 -0.10 -0.77 16 3 C -0.14 -1.59 8.38 37.16 0.31 -1.28 16 4 C -0.15 -1.31 7.30 37.16 0.27 -1.04 16 5 C 0.20 2.34 1.74 -69.08 -0.12 2.22 16 6 H 0.10 1.21 7.50 -51.93 -0.39 0.82 16 7 N -1.12 -14.39 4.12 -5.88 -0.02 -14.41 16 8 S 2.59 46.11 5.33 -107.50 -0.57 45.54 16 9 O -0.97 -20.18 18.08 -57.54 -1.04 -21.22 16 10 O -0.96 -19.28 17.64 -57.54 -1.01 -20.30 16 11 C -0.59 -11.41 5.98 37.16 0.22 -11.18 16 12 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 13 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 17 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 C -0.09 -0.98 3.70 -104.62 -0.39 -1.37 16 22 C -0.10 -1.07 7.29 -39.59 -0.29 -1.36 16 23 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 24 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 25 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 26 C -0.11 -1.16 8.70 -39.59 -0.34 -1.51 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 30 H 0.06 0.78 7.70 -51.93 -0.40 0.38 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.54 5.56 -51.93 -0.29 0.25 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.50 6.66 -51.93 -0.35 0.15 16 36 H 0.41 4.47 6.27 -34.46 -0.22 4.26 16 37 H 0.12 2.06 8.14 -51.92 -0.42 1.63 16 38 H 0.12 2.17 8.14 -51.92 -0.42 1.75 16 39 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.12 1.09 6.12 -52.49 -0.32 0.77 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.12 1.19 8.04 -52.48 -0.42 0.77 16 LS Contribution 378.56 15.07 5.70 5.70 Total: -1.00 -34.28 378.56 -10.45 -44.73 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.34 Total: 4.06 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: -1.88 Total: -34.53 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.71 Total: -40.28 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -2.06 Total: -41.52 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 46.11 SS G_CDS: -0.57 Total: 45.54 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.28 -10.45 -44.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111328264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.409 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds