Wall clock time and date at job start Tue Mar 31 2020 14:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47475 * 2 1 4 4 C 1.53003 * 109.47219 * 239.99526 * 2 1 3 5 5 C 1.52998 * 109.47208 * 119.99769 * 2 1 3 6 6 H 1.08997 * 109.47631 * 295.01294 * 5 2 1 7 7 N 1.46497 * 109.47629 * 175.00368 * 5 2 1 8 8 S 1.65595 * 120.00012 * 124.71394 * 7 5 2 9 9 O 1.42098 * 104.28036 * 179.75614 * 8 7 5 10 10 O 1.42097 * 104.28055 * 307.60953 * 8 7 5 11 11 C 1.81400 * 104.45146 * 63.68388 * 8 7 5 12 12 C 1.52999 * 109.47463 * 180.02562 * 11 8 7 13 13 C 1.50698 * 109.47162 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99990 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00059 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99920 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00075 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47105 * 90.00102 * 17 15 13 19 19 H 1.48490 * 109.47085 * 210.00172 * 17 15 13 20 20 H 1.48503 * 109.46973 * 330.00398 * 17 15 13 21 21 C 1.50709 * 109.46995 * 55.00885 * 5 2 1 22 22 C 1.38226 * 120.00099 * 79.72615 * 21 5 2 23 23 C 1.38238 * 120.00275 * 180.34855 * 22 21 5 24 24 C 1.38235 * 119.99594 * 359.88390 * 23 22 21 25 25 C 1.38240 * 119.99968 * 0.08663 * 24 23 22 26 26 C 1.38228 * 119.99890 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.47031 * 300.00309 * 1 2 3 28 28 H 1.09003 * 109.47386 * 60.00111 * 1 2 3 29 29 H 1.08998 * 109.47548 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47553 * 178.19764 * 3 2 1 31 31 H 1.09002 * 109.47151 * 298.19204 * 3 2 1 32 32 H 1.09000 * 109.47414 * 58.19463 * 3 2 1 33 33 H 1.08998 * 109.47118 * 300.00578 * 4 2 1 34 34 H 1.09006 * 109.46888 * 60.00372 * 4 2 1 35 35 H 1.08998 * 109.47297 * 180.02562 * 4 2 1 36 36 H 0.96997 * 120.00103 * 304.72122 * 7 5 2 37 37 H 1.09008 * 109.46632 * 300.00321 * 11 8 7 38 38 H 1.08999 * 109.47186 * 59.99372 * 11 8 7 39 39 H 1.08995 * 109.47158 * 299.99800 * 12 11 8 40 40 H 1.09002 * 109.46949 * 60.00011 * 12 11 8 41 41 H 0.96998 * 120.00057 * 179.97438 * 16 15 13 42 42 H 1.08001 * 120.00287 * 0.27499 * 22 21 5 43 43 H 1.07998 * 120.00537 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.00227 * 180.11351 * 24 23 22 45 45 H 1.08002 * 119.99782 * 180.02562 * 25 24 23 46 46 H 1.08005 * 119.99485 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 2.0399 -0.7212 1.2492 6 1 1.7514 -0.1584 2.1370 7 7 3.5000 -0.8263 1.1907 8 16 4.4228 -0.2391 2.4340 9 8 5.7595 -0.5161 2.0393 10 8 3.9715 1.0974 2.6047 11 6 3.9574 -1.2556 3.8625 12 6 4.7516 -0.8045 5.0900 13 6 4.3644 -1.6486 6.2768 14 1 3.6260 -2.4290 6.1666 15 6 4.9535 -1.4252 7.5033 16 7 5.8531 -0.4752 7.6374 17 14 4.4741 -2.4719 8.9743 18 1 5.3591 -3.6624 9.0442 19 1 4.6189 -1.6737 10.2180 20 1 3.0631 -2.9119 8.8299 21 6 1.4392 -2.1019 1.3126 22 6 1.9678 -3.1217 0.5437 23 6 1.4123 -4.3864 0.5964 24 6 0.3295 -4.6318 1.4200 25 6 -0.1988 -3.6121 2.1894 26 6 0.3560 -2.3472 2.1357 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1295 1.4426 0.0323 31 1 1.7034 1.9468 -0.9058 32 1 1.6505 1.9656 0.8733 33 1 1.6765 -1.7490 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.1299 -0.7218 -1.2490 36 1 3.9261 -1.2397 0.4237 37 1 2.8911 -1.1411 4.0578 38 1 4.1776 -2.3020 3.6511 39 1 5.8178 -0.9187 4.8949 40 1 4.5308 0.2418 5.3012 41 1 6.2673 -0.3178 8.5002 42 1 2.8143 -2.9301 -0.0992 43 1 1.8256 -5.1833 -0.0040 44 1 -0.1035 -5.6203 1.4626 45 1 -1.0446 -3.8040 2.8331 46 1 -0.0571 -1.5504 2.7365 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111328264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:56 Heat of formation + Delta-G solvation = -90.973372 kcal Electronic energy + Delta-G solvation = -26837.793536 eV Core-core repulsion = 23238.769682 eV Total energy + Delta-G solvation = -3599.023854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.04754 -38.45555 -38.05723 -37.00245 -35.90461 -34.48957 -33.13914 -31.97624 -31.61262 -28.21238 -27.89964 -27.58098 -26.59706 -23.65905 -23.27285 -22.37290 -20.35698 -19.97343 -19.12490 -18.45707 -17.92358 -17.12237 -16.95285 -16.54077 -16.35910 -16.14752 -15.87908 -15.24297 -15.04480 -14.91877 -14.52102 -14.44357 -14.21154 -13.73573 -13.60310 -13.39305 -13.23929 -13.16139 -13.10720 -12.94331 -12.86727 -12.83415 -12.77548 -12.45491 -12.27725 -12.24755 -12.12621 -12.08003 -11.76298 -11.72398 -11.61863 -11.49093 -11.14921 -10.65149 -10.37006 -9.69325 -9.53890 -8.26432 -6.40270 -0.69141 0.49397 0.59620 1.39929 1.41708 1.52876 1.83031 2.37461 2.77512 2.94754 3.06998 3.25740 3.63962 3.81897 3.87308 3.96098 4.07483 4.14670 4.20877 4.24154 4.31687 4.38855 4.56060 4.61328 4.72717 4.73727 4.84029 4.85788 4.94482 4.99653 5.10183 5.13162 5.13727 5.24385 5.25412 5.26462 5.27118 5.37429 5.51373 5.54574 5.65829 5.67747 5.72012 5.78482 6.05802 6.09348 6.19259 6.72844 7.29818 8.85949 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.004466 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.525006 B = 6268.193819 C = 7627.265409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.063 4.063 3 C -0.144 4.144 4 C -0.149 4.149 5 C 0.196 3.804 6 H 0.091 0.909 7 N -1.097 6.097 8 S 2.617 3.383 9 O -0.999 6.999 10 O -0.985 6.985 11 C -0.587 4.587 12 C 0.023 3.977 13 C -0.537 4.537 14 H 0.073 0.927 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.972 3.028 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.258 1.258 21 C -0.098 4.098 22 C -0.113 4.113 23 C -0.128 4.128 24 C -0.127 4.127 25 C -0.126 4.126 26 C -0.122 4.122 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.424 0.576 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.004 0.996 40 H 0.008 0.992 41 H 0.267 0.733 42 H 0.132 0.868 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.921 -6.067 -18.632 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.065 4.065 3 C -0.201 4.201 4 C -0.206 4.206 5 C 0.088 3.912 6 H 0.109 0.891 7 N -0.858 5.858 8 S 2.713 3.287 9 O -0.989 6.989 10 O -0.975 6.975 11 C -0.718 4.718 12 C -0.016 4.016 13 C -0.576 4.576 14 H 0.091 0.909 15 C -0.200 4.200 16 N -0.573 5.573 17 Si 0.795 3.205 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.182 1.182 21 C -0.100 4.100 22 C -0.131 4.131 23 C -0.146 4.146 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.140 4.140 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.262 0.738 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.023 0.977 40 H 0.026 0.974 41 H 0.076 0.924 42 H 0.150 0.850 43 H 0.156 0.844 44 H 0.155 0.845 45 H 0.153 0.847 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.243 -5.149 -18.462 23.880 hybrid contribution 0.162 -0.761 1.050 1.307 sum -14.081 -5.910 -17.412 23.160 Atomic orbital electron populations 1.21877 0.92701 1.02539 1.02514 1.20731 0.96697 0.94906 0.94151 1.21894 1.00783 0.95361 1.02100 1.22039 1.01066 1.01191 0.96304 1.19890 0.77845 0.93100 1.00322 0.89125 1.55436 1.15681 1.78766 1.35877 1.04577 0.73005 0.75333 0.75776 1.93501 1.37229 1.86453 1.81763 1.93521 1.82147 1.35284 1.86553 1.30343 1.11161 1.15278 1.15059 1.18796 0.94086 0.96638 0.92062 1.21476 1.24012 1.18089 0.94036 0.90899 1.26086 0.94706 0.96659 1.02557 1.70099 1.28334 1.32998 1.25918 0.85344 0.79325 0.78276 0.77529 1.19634 1.20692 1.18176 1.20057 0.96812 0.95106 0.97982 1.21144 1.00120 0.92787 0.99035 1.21408 0.96613 0.97048 0.99482 1.21448 0.96743 0.99819 0.96440 1.21364 1.00648 0.92898 0.99518 1.21227 0.96259 0.97970 0.98585 0.92508 0.91295 0.91818 0.93861 0.91063 0.93186 0.91021 0.91442 0.92556 0.73848 0.84546 0.84601 0.97726 0.97373 0.92373 0.84997 0.84394 0.84508 0.84692 0.85376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 7.93 71.98 0.57 -1.60 16 2 C -0.06 -1.17 0.62 -52.19 -0.03 -1.20 16 3 C -0.14 -3.15 8.38 71.98 0.60 -2.54 16 4 C -0.15 -2.28 7.30 71.98 0.53 -1.75 16 5 C 0.20 4.32 1.74 44.25 0.08 4.40 16 6 H 0.09 2.17 7.50 -2.39 -0.02 2.15 16 7 N -1.10 -27.38 4.12 -172.52 -0.71 -28.09 16 8 S 2.62 94.34 5.33 -56.49 -0.30 94.03 16 9 O -1.00 -42.28 18.08 -127.65 -2.31 -44.59 16 10 O -0.99 -40.41 17.64 -127.65 -2.25 -42.66 16 11 C -0.59 -22.89 5.98 71.98 0.43 -22.46 16 12 C 0.02 1.22 4.98 29.85 0.15 1.37 16 13 C -0.54 -30.12 9.11 25.60 0.23 -29.88 16 14 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 15 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 16 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 17 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 21 C -0.10 -1.96 3.70 -19.87 -0.07 -2.04 16 22 C -0.11 -2.05 7.29 22.27 0.16 -1.89 16 23 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 24 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 25 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 26 C -0.12 -2.40 8.70 22.27 0.19 -2.21 16 27 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.98 6.57 -2.39 -0.02 0.96 16 30 H 0.04 1.09 7.70 -2.39 -0.02 1.07 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.01 5.56 -2.39 -0.01 0.99 16 34 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.06 0.87 6.66 -2.39 -0.02 0.85 16 36 H 0.42 8.66 6.27 -96.75 -0.61 8.06 16 37 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 38 H 0.14 4.82 8.14 -2.39 -0.02 4.81 16 39 H 0.00 0.25 8.14 -2.39 -0.02 0.24 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 42 H 0.13 2.03 6.12 -2.91 -0.02 2.02 16 43 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 44 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 45 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 46 H 0.13 2.31 8.04 -2.91 -0.02 2.29 16 Total: -1.00 -74.53 378.56 1.07 -73.46 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.35 Total: 24.44 kcal Atomic # 6 Polarization: -69.25 SS G_CDS: 3.97 Total: -65.28 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -0.43 Total: -84.96 kcal Atomic # 8 Polarization: -82.69 SS G_CDS: -4.56 Total: -87.25 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 94.34 SS G_CDS: -0.30 Total: 94.03 kcal Total: -74.53 1.07 -73.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111328264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.514 kcal (2) G-P(sol) polarization free energy of solvation -74.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds