Wall clock time and date at job start Tue Mar 31 2020 15:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47405 * 2 1 4 4 C 1.53001 * 109.47329 * 120.00116 * 2 1 3 5 5 H 1.08998 * 109.46880 * 305.85747 * 4 2 1 6 6 C 1.52994 * 109.47099 * 65.85987 * 4 2 1 7 7 N 1.46503 * 109.47077 * 292.68413 * 6 4 2 8 8 S 1.65598 * 119.99863 * 164.72287 * 7 6 4 9 9 O 1.42100 * 104.27734 * 181.35065 * 8 7 6 10 10 O 1.42100 * 104.27969 * 309.20984 * 8 7 6 11 11 C 1.81404 * 104.44833 * 65.28193 * 8 7 6 12 12 C 1.52998 * 109.47115 * 179.97438 * 11 8 7 13 13 C 1.50698 * 109.47265 * 180.02562 * 12 11 8 14 14 H 1.08002 * 119.99840 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00194 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00208 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99828 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47165 * 59.99533 * 17 15 13 19 19 H 1.48504 * 109.46679 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.46834 * 299.99395 * 17 15 13 21 21 C 1.50704 * 109.47264 * 185.86164 * 4 2 1 22 22 C 1.38235 * 119.99415 * 299.72399 * 21 4 2 23 23 C 1.38241 * 119.99662 * 179.78810 * 22 21 4 24 24 C 1.38238 * 119.99861 * 0.44248 * 23 22 21 25 25 C 1.38228 * 119.99764 * 359.81245 * 24 23 22 26 26 C 1.38229 * 120.00614 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46905 * 291.21838 * 1 2 3 28 28 H 1.08995 * 109.47020 * 51.21546 * 1 2 3 29 29 H 1.09002 * 109.47090 * 171.21968 * 1 2 3 30 30 H 1.09007 * 109.47386 * 240.00278 * 2 1 3 31 31 H 1.09005 * 109.47009 * 299.99848 * 3 2 1 32 32 H 1.08995 * 109.47265 * 59.99971 * 3 2 1 33 33 H 1.09001 * 109.47717 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47243 * 172.69229 * 6 4 2 35 35 H 1.08996 * 109.47557 * 52.69031 * 6 4 2 36 36 H 0.97005 * 120.00054 * 345.00778 * 7 6 4 37 37 H 1.08997 * 109.46859 * 299.99546 * 11 8 7 38 38 H 1.09001 * 109.46832 * 60.00011 * 11 8 7 39 39 H 1.09005 * 109.47289 * 299.99642 * 12 11 8 40 40 H 1.08993 * 109.47488 * 59.99746 * 12 11 8 41 41 H 0.97000 * 120.00190 * 180.02562 * 16 15 13 42 42 H 1.08004 * 120.00695 * 359.97438 * 22 21 4 43 43 H 1.08002 * 120.00232 * 180.27428 * 23 22 21 44 44 H 1.08000 * 120.00084 * 179.83174 * 24 23 22 45 45 H 1.08008 * 119.99666 * 180.02562 * 25 24 23 46 46 H 1.08000 * 120.00536 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5936 -0.2716 2.1361 6 6 1.6538 -2.1999 1.1777 7 7 0.1983 -2.3301 1.2812 8 16 -0.5378 -3.7527 0.8607 9 8 -1.9228 -3.5015 1.0552 10 8 -0.0207 -4.0467 -0.4299 11 6 0.0686 -4.9531 2.0780 12 6 -0.5478 -6.3241 1.7930 13 6 -0.0445 -7.3213 2.8046 14 1 0.6462 -7.0085 3.5737 15 6 -0.4651 -8.6331 2.7477 16 7 -1.3057 -9.0141 1.8110 17 14 0.1593 -9.8693 4.0014 18 1 -0.2257 -9.4279 5.3660 19 1 -0.4390 -11.2000 3.7248 20 1 1.6385 -9.9625 3.9102 21 6 3.5400 -0.5968 1.3239 22 6 4.3270 -1.1036 0.3067 23 6 5.7028 -0.9856 0.3730 24 6 6.2919 -0.3690 1.4610 25 6 5.5051 0.1331 2.4806 26 6 4.1292 0.0190 2.4122 27 1 -0.3633 0.3719 0.9580 28 1 -0.3633 0.6437 -0.8010 29 1 -0.3633 -1.0156 -0.1569 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 2.1260 -2.7389 1.9992 35 1 1.9895 -2.6177 0.2286 36 1 -0.3347 -1.5816 1.5921 37 1 1.1544 -5.0215 2.0111 38 1 -0.2142 -4.6292 3.0796 39 1 -1.6336 -6.2555 1.8601 40 1 -0.2655 -6.6483 0.7913 41 1 -1.6019 -9.9370 1.7712 42 1 3.8670 -1.5891 -0.5414 43 1 6.3175 -1.3776 -0.4238 44 1 7.3669 -0.2792 1.5141 45 1 5.9654 0.6152 3.3304 46 1 3.5145 0.4116 3.2087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111328386.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:59 Heat of formation + Delta-G solvation = -69.067926 kcal Electronic energy + Delta-G solvation = -25787.616353 eV Core-core repulsion = 22189.542391 eV Total energy + Delta-G solvation = -3598.073962 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.09150 -37.56027 -36.54924 -35.42735 -33.90774 -33.87919 -31.87362 -31.15299 -31.09008 -28.00807 -27.13312 -25.58165 -23.69880 -22.81011 -21.76939 -21.65614 -20.00414 -18.85161 -17.52787 -16.94588 -16.62123 -16.15593 -15.73772 -15.38661 -15.15654 -14.74785 -14.60229 -14.53886 -14.16840 -13.95586 -13.56025 -13.40596 -13.24988 -12.66739 -12.54675 -12.50637 -12.21255 -12.01421 -11.82283 -11.73542 -11.58495 -11.49606 -11.41284 -11.25652 -11.06525 -11.00065 -10.95700 -10.79108 -10.57046 -10.42686 -10.36870 -9.76308 -9.40782 -9.10411 -8.98837 -8.81971 -8.49586 -6.11819 -4.17461 0.79570 1.16627 1.21781 3.15464 3.27611 3.32353 3.34241 3.59025 4.22363 4.36663 4.41847 4.42985 4.66139 4.77634 4.79401 4.81966 4.92217 4.99431 5.15952 5.23027 5.23254 5.32726 5.34753 5.38040 5.48907 5.54290 5.66443 5.68941 5.72085 5.74970 5.77664 5.85988 5.88567 5.95759 6.05002 6.17675 6.21478 6.29659 6.33852 6.46485 6.49846 6.80837 7.09101 7.30561 7.36944 7.80959 8.18237 8.85711 9.47237 10.99205 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013458 B = 0.003264 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.058753 B = 8575.164491 C =10074.458752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.050 4.050 5 H 0.086 0.914 6 C 0.123 3.877 7 N -1.127 6.127 8 S 2.590 3.410 9 O -0.968 6.968 10 O -0.966 6.966 11 C -0.591 4.591 12 C 0.028 3.972 13 C -0.521 4.521 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.891 5.891 17 Si 0.900 3.100 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.068 4.068 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.126 4.126 25 C -0.120 4.120 26 C -0.115 4.115 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.414 0.586 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.266 0.734 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.024 21.904 -0.762 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.104 4.104 3 C -0.203 4.203 4 C -0.070 4.070 5 H 0.105 0.895 6 C -0.003 4.003 7 N -0.887 5.887 8 S 2.688 3.312 9 O -0.958 6.958 10 O -0.956 6.956 11 C -0.724 4.724 12 C -0.011 4.011 13 C -0.560 4.560 14 H 0.079 0.921 15 C -0.145 4.145 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.069 4.069 22 C -0.132 4.132 23 C -0.135 4.135 24 C -0.144 4.144 25 C -0.138 4.138 26 C -0.133 4.133 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.250 0.750 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.143 0.857 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.422 21.516 -1.652 24.416 hybrid contribution 0.580 -0.542 1.434 1.639 sum 12.003 20.974 -0.218 24.167 Atomic orbital electron populations 1.22221 0.94979 1.03227 1.01599 1.21150 0.96011 0.96013 0.97266 1.21865 1.01179 0.95786 1.01492 1.20476 0.91339 0.95376 0.99788 0.89541 1.21334 0.79908 0.96479 1.02603 1.56111 1.15343 1.31897 1.85341 1.05610 0.74197 0.74593 0.76834 1.93555 1.31158 1.83783 1.87309 1.93540 1.80728 1.84191 1.37107 1.30448 1.11597 1.14757 1.15590 1.18955 0.96519 0.86655 0.98965 1.20968 1.28015 0.93416 1.13646 0.92110 1.25064 0.94949 0.98528 0.95913 1.69941 1.32110 1.17927 1.32890 0.86531 0.79111 0.80175 0.81465 1.20084 1.21065 1.20070 1.19682 0.94618 0.97992 0.94625 1.21105 0.93680 0.99601 0.98768 1.21165 0.94892 0.99167 0.98285 1.21145 0.99751 0.99006 0.94489 1.21119 0.93825 1.00076 0.98767 1.21055 0.94855 0.99661 0.97708 0.92650 0.92662 0.90906 0.90603 0.92855 0.92872 0.92478 0.91450 0.89931 0.74953 0.86342 0.86122 0.94863 0.94838 0.92469 0.85738 0.86080 0.86342 0.86261 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 7.67 37.15 0.28 -1.29 16 2 C -0.09 -0.78 2.25 -90.62 -0.20 -0.99 16 3 C -0.15 -1.17 8.85 37.16 0.33 -0.85 16 4 C -0.05 -0.45 1.84 -91.77 -0.17 -0.62 16 5 H 0.09 0.69 7.85 -51.93 -0.41 0.29 16 6 C 0.12 1.35 5.19 -4.04 -0.02 1.33 16 7 N -1.13 -13.99 3.72 -10.61 -0.04 -14.03 16 8 S 2.59 45.44 5.46 -107.50 -0.59 44.85 16 9 O -0.97 -19.80 18.08 -57.54 -1.04 -20.84 16 10 O -0.97 -19.60 17.48 -57.54 -1.01 -20.61 16 11 C -0.59 -11.23 6.02 37.16 0.22 -11.01 16 12 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 13 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 17 Si 0.90 21.25 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 C -0.07 -0.62 3.26 -104.62 -0.34 -0.96 16 22 C -0.11 -1.06 8.78 -39.58 -0.35 -1.41 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 24 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 25 C -0.12 -0.98 10.05 -39.59 -0.40 -1.37 16 26 C -0.11 -0.98 9.67 -39.59 -0.38 -1.36 16 27 H 0.05 0.46 7.69 -51.93 -0.40 0.06 16 28 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.07 0.84 5.74 -51.93 -0.30 0.54 16 30 H 0.08 0.74 7.61 -51.92 -0.39 0.34 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.48 7.01 -51.93 -0.36 0.12 16 34 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 35 H 0.08 0.96 7.17 -51.93 -0.37 0.59 16 36 H 0.41 4.37 6.43 -34.47 -0.22 4.15 16 37 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 38 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.12 1.10 7.28 -52.48 -0.38 0.72 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 46 H 0.12 0.86 7.95 -52.49 -0.42 0.44 16 LS Contribution 382.15 15.07 5.76 5.76 Total: -1.00 -34.49 382.15 -11.02 -45.50 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.45 Total: 2.97 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: -2.37 Total: -34.00 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.70 Total: -39.86 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -2.05 Total: -41.45 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 45.44 SS G_CDS: -0.59 Total: 44.85 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.49 -11.02 -45.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111328386.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.565 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds