Wall clock time and date at job start Tue Mar 31 2020 15:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47405 * 2 1 4 4 C 1.53001 * 109.47329 * 120.00116 * 2 1 3 5 5 H 1.08998 * 109.46880 * 305.85747 * 4 2 1 6 6 C 1.52994 * 109.47099 * 65.85987 * 4 2 1 7 7 N 1.46503 * 109.47077 * 292.68413 * 6 4 2 8 8 S 1.65598 * 119.99863 * 164.72287 * 7 6 4 9 9 O 1.42100 * 104.27734 * 181.35065 * 8 7 6 10 10 O 1.42100 * 104.27969 * 309.20984 * 8 7 6 11 11 C 1.81404 * 104.44833 * 65.28193 * 8 7 6 12 12 C 1.52998 * 109.47115 * 179.97438 * 11 8 7 13 13 C 1.50698 * 109.47265 * 180.02562 * 12 11 8 14 14 H 1.08002 * 119.99840 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00194 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00208 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99828 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47165 * 59.99533 * 17 15 13 19 19 H 1.48504 * 109.46679 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.46834 * 299.99395 * 17 15 13 21 21 C 1.50704 * 109.47264 * 185.86164 * 4 2 1 22 22 C 1.38235 * 119.99415 * 299.72399 * 21 4 2 23 23 C 1.38241 * 119.99662 * 179.78810 * 22 21 4 24 24 C 1.38238 * 119.99861 * 0.44248 * 23 22 21 25 25 C 1.38228 * 119.99764 * 359.81245 * 24 23 22 26 26 C 1.38229 * 120.00614 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46905 * 291.21838 * 1 2 3 28 28 H 1.08995 * 109.47020 * 51.21546 * 1 2 3 29 29 H 1.09002 * 109.47090 * 171.21968 * 1 2 3 30 30 H 1.09007 * 109.47386 * 240.00278 * 2 1 3 31 31 H 1.09005 * 109.47009 * 299.99848 * 3 2 1 32 32 H 1.08995 * 109.47265 * 59.99971 * 3 2 1 33 33 H 1.09001 * 109.47717 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47243 * 172.69229 * 6 4 2 35 35 H 1.08996 * 109.47557 * 52.69031 * 6 4 2 36 36 H 0.97005 * 120.00054 * 345.00778 * 7 6 4 37 37 H 1.08997 * 109.46859 * 299.99546 * 11 8 7 38 38 H 1.09001 * 109.46832 * 60.00011 * 11 8 7 39 39 H 1.09005 * 109.47289 * 299.99642 * 12 11 8 40 40 H 1.08993 * 109.47488 * 59.99746 * 12 11 8 41 41 H 0.97000 * 120.00190 * 180.02562 * 16 15 13 42 42 H 1.08004 * 120.00695 * 359.97438 * 22 21 4 43 43 H 1.08002 * 120.00232 * 180.27428 * 23 22 21 44 44 H 1.08000 * 120.00084 * 179.83174 * 24 23 22 45 45 H 1.08008 * 119.99666 * 180.02562 * 25 24 23 46 46 H 1.08000 * 120.00536 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5936 -0.2716 2.1361 6 6 1.6538 -2.1999 1.1777 7 7 0.1983 -2.3301 1.2812 8 16 -0.5378 -3.7527 0.8607 9 8 -1.9228 -3.5015 1.0552 10 8 -0.0207 -4.0467 -0.4299 11 6 0.0686 -4.9531 2.0780 12 6 -0.5478 -6.3241 1.7930 13 6 -0.0445 -7.3213 2.8046 14 1 0.6462 -7.0085 3.5737 15 6 -0.4651 -8.6331 2.7477 16 7 -1.3057 -9.0141 1.8110 17 14 0.1593 -9.8693 4.0014 18 1 -0.2257 -9.4279 5.3660 19 1 -0.4390 -11.2000 3.7248 20 1 1.6385 -9.9625 3.9102 21 6 3.5400 -0.5968 1.3239 22 6 4.3270 -1.1036 0.3067 23 6 5.7028 -0.9856 0.3730 24 6 6.2919 -0.3690 1.4610 25 6 5.5051 0.1331 2.4806 26 6 4.1292 0.0190 2.4122 27 1 -0.3633 0.3719 0.9580 28 1 -0.3633 0.6437 -0.8010 29 1 -0.3633 -1.0156 -0.1569 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 2.1260 -2.7389 1.9992 35 1 1.9895 -2.6177 0.2286 36 1 -0.3347 -1.5816 1.5921 37 1 1.1544 -5.0215 2.0111 38 1 -0.2142 -4.6292 3.0796 39 1 -1.6336 -6.2555 1.8601 40 1 -0.2655 -6.6483 0.7913 41 1 -1.6019 -9.9370 1.7712 42 1 3.8670 -1.5891 -0.5414 43 1 6.3175 -1.3776 -0.4238 44 1 7.3669 -0.2792 1.5141 45 1 5.9654 0.6152 3.3304 46 1 3.5145 0.4116 3.2087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111328386.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:58 Heat of formation + Delta-G solvation = -90.694690 kcal Electronic energy + Delta-G solvation = -25788.554160 eV Core-core repulsion = 22189.542391 eV Total energy + Delta-G solvation = -3599.011769 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77139 -38.36565 -38.06771 -36.99163 -35.89195 -34.85530 -33.12577 -32.55210 -31.70423 -28.80865 -27.88213 -27.53572 -24.50642 -23.60174 -23.44827 -22.42440 -20.83984 -20.13625 -19.07691 -18.26774 -17.71111 -17.35142 -17.12683 -16.53641 -16.35295 -16.03854 -15.83286 -15.39170 -15.13133 -14.90174 -14.66193 -14.47535 -14.18921 -14.08598 -13.72003 -13.36042 -13.25916 -13.19935 -13.12529 -12.97570 -12.90682 -12.88144 -12.79642 -12.71830 -12.23016 -12.15791 -12.12477 -11.90405 -11.79020 -11.73846 -11.50410 -11.30368 -11.13989 -10.63868 -10.16180 -9.73198 -9.50926 -8.25782 -6.40004 -0.66593 0.52029 0.58921 1.40770 1.44316 1.52465 1.87381 2.38201 2.80836 2.95161 3.07484 3.28207 3.64271 3.72261 3.96693 4.02711 4.13625 4.17497 4.23759 4.24855 4.37331 4.40991 4.48325 4.60103 4.61204 4.71516 4.76440 4.80267 4.85008 4.95415 5.03433 5.07079 5.10917 5.21217 5.25807 5.27635 5.28415 5.33579 5.47007 5.48974 5.67080 5.68360 5.72047 5.80880 6.06339 6.12696 6.20920 6.73504 7.30192 8.86316 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013458 B = 0.003264 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.058753 B = 8575.164491 C =10074.458752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.041 4.041 5 H 0.104 0.896 6 C 0.114 3.886 7 N -1.104 6.104 8 S 2.618 3.382 9 O -0.998 6.998 10 O -0.995 6.995 11 C -0.591 4.591 12 C 0.020 3.980 13 C -0.540 4.540 14 H 0.076 0.924 15 C -0.004 4.004 16 N -0.934 5.934 17 Si 0.974 3.026 18 H -0.263 1.263 19 H -0.284 1.284 20 H -0.263 1.263 21 C -0.075 4.075 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.132 4.132 25 C -0.126 4.126 26 C -0.120 4.120 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.427 0.573 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.006 0.994 40 H 0.006 0.994 41 H 0.267 0.733 42 H 0.120 0.880 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.793 23.397 1.299 27.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.104 4.104 3 C -0.196 4.196 4 C -0.061 4.061 5 H 0.122 0.878 6 C -0.012 4.012 7 N -0.868 5.868 8 S 2.714 3.286 9 O -0.988 6.988 10 O -0.985 6.985 11 C -0.723 4.723 12 C -0.019 4.019 13 C -0.579 4.579 14 H 0.094 0.906 15 C -0.202 4.202 16 N -0.574 5.574 17 Si 0.797 3.203 18 H -0.188 1.188 19 H -0.210 1.210 20 H -0.188 1.188 21 C -0.076 4.076 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.144 4.144 26 C -0.138 4.138 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.266 0.734 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.076 0.924 42 H 0.138 0.862 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.193 23.020 0.421 26.535 hybrid contribution 0.080 -0.912 0.745 1.180 sum 13.273 22.107 1.165 25.812 Atomic orbital electron populations 1.22249 0.95412 1.02029 1.02742 1.21132 0.95578 0.96751 0.96965 1.21790 1.00849 0.94928 1.02056 1.20420 0.91636 0.93702 1.00370 0.87795 1.21591 0.78411 0.98434 1.02779 1.55586 1.16264 1.29999 1.84991 1.04493 0.73268 0.74954 0.75837 1.93506 1.33402 1.84430 1.87494 1.93501 1.81097 1.85149 1.38776 1.30361 1.12635 1.11751 1.17527 1.18817 0.95337 0.90345 0.97404 1.21496 1.28044 0.94203 1.14191 0.90628 1.26120 0.95047 1.01004 0.98049 1.70093 1.33717 1.18507 1.35075 0.85370 0.78945 0.77107 0.78877 1.18753 1.20957 1.18755 1.19676 0.94348 0.98593 0.94971 1.21213 0.94254 1.00224 0.99044 1.21381 0.94868 0.99431 0.99008 1.21431 1.00846 0.98510 0.94236 1.21421 0.93854 0.99787 0.99301 1.21288 0.95363 0.99369 0.97780 0.90980 0.92279 0.93044 0.91830 0.92691 0.91904 0.92859 0.90067 0.90886 0.73379 0.84157 0.83881 0.97567 0.97545 0.92380 0.86207 0.85113 0.84640 0.84347 0.84563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 7.67 71.98 0.55 -2.45 16 2 C -0.09 -1.45 2.25 -10.79 -0.02 -1.47 16 3 C -0.14 -1.98 8.85 71.98 0.64 -1.34 16 4 C -0.04 -0.67 1.84 -11.54 -0.02 -0.69 16 5 H 0.10 1.32 7.85 -2.39 -0.02 1.31 16 6 C 0.11 2.33 5.19 86.38 0.45 2.78 16 7 N -1.10 -25.99 3.72 -187.49 -0.70 -26.69 16 8 S 2.62 92.11 5.46 -56.49 -0.31 91.80 16 9 O -1.00 -41.26 18.08 -127.65 -2.31 -43.57 16 10 O -1.00 -41.27 17.48 -127.65 -2.23 -43.50 16 11 C -0.59 -22.20 6.02 71.98 0.43 -21.77 16 12 C 0.02 1.04 4.98 29.85 0.15 1.19 16 13 C -0.54 -30.07 9.11 25.60 0.23 -29.84 16 14 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 15 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 16 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 17 Si 0.97 43.33 29.54 68.60 2.03 45.35 16 18 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 21 C -0.08 -1.23 3.26 -19.86 -0.06 -1.30 16 22 C -0.13 -2.30 8.78 22.27 0.20 -2.11 16 23 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 24 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 25 C -0.13 -1.73 10.05 22.27 0.22 -1.50 16 26 C -0.12 -1.74 9.67 22.27 0.22 -1.52 16 27 H 0.07 1.03 7.69 -2.39 -0.02 1.01 16 28 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 29 H 0.05 1.15 5.74 -2.39 -0.01 1.14 16 30 H 0.06 1.22 7.61 -2.38 -0.02 1.21 16 31 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.81 7.01 -2.39 -0.02 0.79 16 34 H 0.08 1.47 8.13 -2.39 -0.02 1.45 16 35 H 0.07 1.67 7.17 -2.39 -0.02 1.65 16 36 H 0.43 8.22 6.43 -96.74 -0.62 7.60 16 37 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 38 H 0.14 4.68 8.14 -2.39 -0.02 4.66 16 39 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 40 H 0.01 0.35 8.14 -2.39 -0.02 0.34 16 41 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.12 2.15 7.28 -2.91 -0.02 2.12 16 43 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 44 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 45 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 46 H 0.14 1.48 7.95 -2.91 -0.02 1.45 16 Total: -1.00 -75.45 382.15 0.98 -74.46 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.33 Total: 22.32 kcal Atomic # 6 Polarization: -67.20 SS G_CDS: 3.89 Total: -63.32 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -0.41 Total: -83.56 kcal Atomic # 8 Polarization: -82.52 SS G_CDS: -4.54 Total: -87.06 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 92.11 SS G_CDS: -0.31 Total: 91.80 kcal Total: -75.45 0.98 -74.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111328386.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.232 kcal (2) G-P(sol) polarization free energy of solvation -75.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds