Wall clock time and date at job start Tue Mar 31 2020 14:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39676 * 119.99999 * 2 1 4 4 C 1.38918 * 120.07049 * 155.25518 * 3 2 1 5 5 C 1.38104 * 119.92017 * 180.30184 * 4 3 2 6 6 C 1.38286 * 120.07376 * 359.44392 * 5 4 3 7 7 C 1.50700 * 119.92533 * 180.30101 * 6 5 4 8 8 C 1.53005 * 109.47122 * 60.00302 * 7 6 5 9 9 C 1.53003 * 109.47362 * 180.02562 * 7 6 5 10 10 C 1.53008 * 109.47103 * 300.00473 * 7 6 5 11 11 C 1.38289 * 120.15212 * 0.28357 * 6 5 4 12 12 C 1.38099 * 120.07123 * 359.97438 * 11 6 5 13 13 S 1.65608 * 120.00043 * 180.02562 * 2 1 3 14 14 O 1.42101 * 104.27331 * 26.07048 * 13 2 1 15 15 O 1.42103 * 104.27463 * 153.92870 * 13 2 1 16 16 C 1.81394 * 104.44827 * 269.99940 * 13 2 1 17 17 C 1.52994 * 109.47194 * 179.97438 * 16 13 2 18 18 C 1.50697 * 109.47417 * 179.97438 * 17 16 13 19 19 H 1.08001 * 120.00222 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00092 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99949 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 120.00124 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46972 * 59.99540 * 22 20 18 24 24 H 1.48496 * 109.47100 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46507 * 299.99921 * 22 20 18 26 26 H 1.09004 * 109.47267 * 89.99909 * 1 2 3 27 27 H 1.08998 * 109.46843 * 209.99472 * 1 2 3 28 28 H 1.08999 * 109.46797 * 329.99755 * 1 2 3 29 29 H 1.07998 * 120.03882 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.96506 * 179.72934 * 5 4 3 31 31 H 1.08998 * 109.47081 * 59.99866 * 8 7 6 32 32 H 1.09004 * 109.47275 * 180.02562 * 8 7 6 33 33 H 1.09001 * 109.46956 * 300.00179 * 8 7 6 34 34 H 1.08994 * 109.46989 * 60.00287 * 9 7 6 35 35 H 1.09004 * 109.47089 * 180.02562 * 9 7 6 36 36 H 1.08998 * 109.47048 * 300.00260 * 9 7 6 37 37 H 1.08994 * 109.47385 * 59.99993 * 10 7 6 38 38 H 1.08999 * 109.46991 * 180.02562 * 10 7 6 39 39 H 1.09000 * 109.46730 * 299.99600 * 10 7 6 40 40 H 1.07997 * 119.96278 * 180.02562 * 11 6 5 41 41 H 1.08006 * 120.03438 * 180.02562 * 12 11 6 42 42 H 1.09001 * 109.47151 * 299.99978 * 16 13 2 43 43 H 1.08996 * 109.47485 * 60.00190 * 16 13 2 44 44 H 1.09001 * 109.47156 * 300.00101 * 17 16 13 45 45 H 1.09008 * 109.47314 * 59.99715 * 17 16 13 46 46 H 0.97010 * 119.99701 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2096 0.0000 4 6 3.4569 1.2665 0.5032 5 6 4.1423 2.4655 0.5074 6 6 3.5466 3.6060 0.0010 7 6 4.3001 4.9111 0.0010 8 6 5.5784 4.7621 -0.8265 9 6 3.4226 6.0067 -0.6080 10 6 4.6640 5.2899 1.4381 11 6 2.2611 3.5517 -0.5059 12 6 1.5681 2.3571 -0.5083 13 16 2.2930 -1.4342 -0.0006 14 8 1.3969 -2.3559 -0.6063 15 8 3.5395 -1.1188 -0.6057 16 6 2.5194 -1.8269 1.7558 17 6 3.2808 -3.1472 1.8891 18 6 3.4694 -3.4732 3.3483 19 1 3.0850 -2.8053 4.1049 20 6 4.1337 -4.6236 3.7174 21 7 4.6023 -5.4368 2.7961 22 14 4.3669 -5.0281 5.5262 23 1 3.0397 -5.1546 6.1802 24 1 5.1061 -6.3095 5.6556 25 1 5.1397 -3.9419 6.1805 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5139 29 1 3.9244 0.3752 0.8948 30 1 5.1464 2.5115 0.9025 31 1 5.3191 4.4922 -1.8502 32 1 6.1236 5.7059 -0.8261 33 1 6.2033 3.9817 -0.3922 34 1 2.5122 6.1128 -0.0182 35 1 3.9679 6.9506 -0.6084 36 1 3.1630 5.7371 -1.6317 37 1 5.2890 4.5096 1.8723 38 1 5.2086 6.2341 1.4381 39 1 3.7533 5.3961 2.0275 40 1 1.7989 4.4442 -0.9011 41 1 0.5643 2.3153 -0.9047 42 1 3.0866 -1.0297 2.2362 43 1 1.5452 -1.9198 2.2358 44 1 2.7132 -3.9442 1.4088 45 1 4.2551 -3.0549 1.4090 46 1 5.0693 -6.2464 3.0558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111332019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:28 Heat of formation + Delta-G solvation = -60.999690 kcal Electronic energy + Delta-G solvation = -25948.131672 eV Core-core repulsion = 22350.407575 eV Total energy + Delta-G solvation = -3597.724097 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.09852 -37.60513 -36.82717 -35.58254 -34.74759 -33.96006 -31.34138 -31.09664 -29.23809 -27.62504 -27.38422 -26.24192 -25.65836 -23.00741 -22.07707 -21.53462 -19.46988 -18.92427 -17.80261 -17.04001 -16.55239 -15.79322 -15.74483 -15.31393 -14.77871 -14.56808 -14.44958 -14.41804 -14.14193 -13.78887 -13.52033 -13.40131 -12.85523 -12.81336 -12.63647 -12.52980 -12.23678 -12.14098 -11.85580 -11.85064 -11.81961 -11.69029 -11.58245 -11.24012 -11.15352 -11.09822 -11.02760 -10.72508 -10.61540 -10.49482 -10.40941 -10.21116 -9.73469 -9.22420 -8.89023 -8.53640 -7.88965 -6.15877 -4.22047 0.54505 1.40910 1.44292 2.79169 3.25353 3.30277 3.32057 3.74437 4.19045 4.34754 4.42195 4.46705 4.55994 4.64162 4.83947 4.97515 5.01966 5.15393 5.19078 5.33890 5.35165 5.37888 5.41161 5.46159 5.47296 5.58895 5.62898 5.65151 5.68980 5.71335 5.72401 5.79249 5.83499 5.90133 6.06801 6.12323 6.15571 6.33156 6.39944 6.53775 6.65058 6.67642 7.10213 7.23441 7.28893 7.76621 8.12291 8.80980 9.42994 10.95033 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.003347 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.406762 B = 8362.898729 C = 9536.115724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.950 5.950 3 C 0.176 3.824 4 C -0.151 4.151 5 C -0.077 4.077 6 C -0.103 4.103 7 C -0.026 4.026 8 C -0.140 4.140 9 C -0.143 4.143 10 C -0.139 4.139 11 C -0.095 4.095 12 C -0.152 4.152 13 S 2.577 3.423 14 O -0.955 6.955 15 O -0.948 6.948 16 C -0.586 4.586 17 C 0.029 3.971 18 C -0.522 4.522 19 H 0.062 0.938 20 C 0.059 3.941 21 N -0.890 5.890 22 Si 0.901 3.099 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.132 0.868 30 H 0.126 0.874 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.034 0.966 45 H 0.035 0.965 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 22.081 -5.245 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.772 5.772 3 C 0.080 3.920 4 C -0.172 4.172 5 C -0.096 4.096 6 C -0.104 4.104 7 C -0.026 4.026 8 C -0.197 4.197 9 C -0.200 4.200 10 C -0.196 4.196 11 C -0.114 4.114 12 C -0.174 4.174 13 S 2.677 3.323 14 O -0.945 6.945 15 O -0.939 6.939 16 C -0.720 4.720 17 C -0.010 4.010 18 C -0.562 4.562 19 H 0.080 0.920 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.728 3.272 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.200 1.200 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.754 21.369 -6.108 22.727 hybrid contribution -0.054 -0.273 1.558 1.582 sum -4.807 21.096 -4.551 22.110 Atomic orbital electron populations 1.21627 0.77586 1.03765 1.02893 1.55868 1.15639 1.20249 1.85492 1.17526 0.92007 0.85759 0.96725 1.21141 0.93925 0.99583 1.02584 1.20727 0.99483 0.91148 0.98225 1.19702 0.94743 0.94676 1.01277 1.19433 0.95018 0.92027 0.96088 1.21909 0.96177 1.01667 0.99958 1.21954 0.99558 0.97717 1.00769 1.21901 1.01526 1.01244 0.94963 1.20936 0.94079 0.97204 0.99152 1.20812 1.01063 0.92056 1.03437 1.06365 0.73896 0.72242 0.79825 1.93556 1.64851 1.60922 1.75165 1.93589 1.42911 1.82171 1.75209 1.30512 1.10656 1.11044 1.19776 1.18983 0.94976 0.86853 1.00183 1.20945 1.37429 1.07167 0.90624 0.92001 1.25066 0.95203 0.96034 0.98092 1.69946 1.37114 1.12659 1.33052 0.86514 0.78431 0.77790 0.84471 1.20043 1.21029 1.20007 0.91789 0.90023 0.90435 0.85054 0.85570 0.92455 0.92578 0.92215 0.92328 0.92565 0.92314 0.92245 0.92579 0.92517 0.85537 0.85770 0.85895 0.85952 0.94771 0.94703 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 9.20 59.85 0.55 1.52 16 2 N -0.95 -14.08 3.32 -65.39 -0.22 -14.30 16 3 C 0.18 2.56 6.04 -83.79 -0.51 2.06 16 4 C -0.15 -2.30 8.42 -39.38 -0.33 -2.63 16 5 C -0.08 -1.00 8.70 -39.61 -0.34 -1.34 16 6 C -0.10 -1.15 4.76 -104.59 -0.50 -1.65 16 7 C -0.03 -0.23 0.85 -155.65 -0.13 -0.36 16 8 C -0.14 -1.20 8.29 37.16 0.31 -0.89 16 9 C -0.14 -1.04 7.13 37.16 0.26 -0.77 16 10 C -0.14 -1.14 8.29 37.16 0.31 -0.83 16 11 C -0.10 -1.03 8.97 -39.61 -0.36 -1.38 16 12 C -0.15 -1.83 9.13 -39.39 -0.36 -2.19 16 13 S 2.58 48.09 4.74 -107.50 -0.51 47.58 16 14 O -0.95 -19.99 17.09 -57.54 -0.98 -20.98 16 15 O -0.95 -20.00 15.15 -57.54 -0.87 -20.87 16 16 C -0.59 -11.29 5.98 37.15 0.22 -11.07 16 17 C 0.03 0.74 4.98 -27.89 -0.14 0.60 16 18 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 22 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.88 7.79 -51.93 -0.40 0.47 16 28 H 0.08 0.68 7.47 -51.93 -0.39 0.29 16 29 H 0.13 2.13 5.13 -52.49 -0.27 1.86 16 30 H 0.13 1.43 7.09 -52.49 -0.37 1.06 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.53 7.38 -51.93 -0.38 0.15 16 34 H 0.06 0.40 7.51 -51.93 -0.39 0.01 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.42 7.51 -51.93 -0.39 0.03 16 37 H 0.06 0.50 7.38 -51.93 -0.38 0.12 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.13 1.06 5.88 -52.49 -0.31 0.75 16 41 H 0.12 1.23 7.13 -52.48 -0.37 0.85 16 42 H 0.12 2.15 7.20 -51.92 -0.37 1.77 16 43 H 0.12 2.10 8.14 -51.93 -0.42 1.67 16 44 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.03 0.93 8.14 -51.92 -0.42 0.50 16 46 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -33.80 376.57 -10.00 -43.80 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.38 Total: 0.61 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: -1.42 Total: -32.00 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.52 Total: -39.83 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -1.85 Total: -41.85 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 48.09 SS G_CDS: -0.51 Total: 47.58 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.80 -10.00 -43.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111332019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.202 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds