Wall clock time and date at job start Tue Mar 31 2020 14:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39676 * 119.99999 * 2 1 4 4 C 1.38918 * 120.07049 * 155.25518 * 3 2 1 5 5 C 1.38104 * 119.92017 * 180.30184 * 4 3 2 6 6 C 1.38286 * 120.07376 * 359.44392 * 5 4 3 7 7 C 1.50700 * 119.92533 * 180.30101 * 6 5 4 8 8 C 1.53005 * 109.47122 * 60.00302 * 7 6 5 9 9 C 1.53003 * 109.47362 * 180.02562 * 7 6 5 10 10 C 1.53008 * 109.47103 * 300.00473 * 7 6 5 11 11 C 1.38289 * 120.15212 * 0.28357 * 6 5 4 12 12 C 1.38099 * 120.07123 * 359.97438 * 11 6 5 13 13 S 1.65608 * 120.00043 * 180.02562 * 2 1 3 14 14 O 1.42101 * 104.27331 * 26.07048 * 13 2 1 15 15 O 1.42103 * 104.27463 * 153.92870 * 13 2 1 16 16 C 1.81394 * 104.44827 * 269.99940 * 13 2 1 17 17 C 1.52994 * 109.47194 * 179.97438 * 16 13 2 18 18 C 1.50697 * 109.47417 * 179.97438 * 17 16 13 19 19 H 1.08001 * 120.00222 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00092 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99949 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 120.00124 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46972 * 59.99540 * 22 20 18 24 24 H 1.48496 * 109.47100 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46507 * 299.99921 * 22 20 18 26 26 H 1.09004 * 109.47267 * 89.99909 * 1 2 3 27 27 H 1.08998 * 109.46843 * 209.99472 * 1 2 3 28 28 H 1.08999 * 109.46797 * 329.99755 * 1 2 3 29 29 H 1.07998 * 120.03882 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.96506 * 179.72934 * 5 4 3 31 31 H 1.08998 * 109.47081 * 59.99866 * 8 7 6 32 32 H 1.09004 * 109.47275 * 180.02562 * 8 7 6 33 33 H 1.09001 * 109.46956 * 300.00179 * 8 7 6 34 34 H 1.08994 * 109.46989 * 60.00287 * 9 7 6 35 35 H 1.09004 * 109.47089 * 180.02562 * 9 7 6 36 36 H 1.08998 * 109.47048 * 300.00260 * 9 7 6 37 37 H 1.08994 * 109.47385 * 59.99993 * 10 7 6 38 38 H 1.08999 * 109.46991 * 180.02562 * 10 7 6 39 39 H 1.09000 * 109.46730 * 299.99600 * 10 7 6 40 40 H 1.07997 * 119.96278 * 180.02562 * 11 6 5 41 41 H 1.08006 * 120.03438 * 180.02562 * 12 11 6 42 42 H 1.09001 * 109.47151 * 299.99978 * 16 13 2 43 43 H 1.08996 * 109.47485 * 60.00190 * 16 13 2 44 44 H 1.09001 * 109.47156 * 300.00101 * 17 16 13 45 45 H 1.09008 * 109.47314 * 59.99715 * 17 16 13 46 46 H 0.97010 * 119.99701 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2096 0.0000 4 6 3.4569 1.2665 0.5032 5 6 4.1423 2.4655 0.5074 6 6 3.5466 3.6060 0.0010 7 6 4.3001 4.9111 0.0010 8 6 5.5784 4.7621 -0.8265 9 6 3.4226 6.0067 -0.6080 10 6 4.6640 5.2899 1.4381 11 6 2.2611 3.5517 -0.5059 12 6 1.5681 2.3571 -0.5083 13 16 2.2930 -1.4342 -0.0006 14 8 1.3969 -2.3559 -0.6063 15 8 3.5395 -1.1188 -0.6057 16 6 2.5194 -1.8269 1.7558 17 6 3.2808 -3.1472 1.8891 18 6 3.4694 -3.4732 3.3483 19 1 3.0850 -2.8053 4.1049 20 6 4.1337 -4.6236 3.7174 21 7 4.6023 -5.4368 2.7961 22 14 4.3669 -5.0281 5.5262 23 1 3.0397 -5.1546 6.1802 24 1 5.1061 -6.3095 5.6556 25 1 5.1397 -3.9419 6.1805 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5139 29 1 3.9244 0.3752 0.8948 30 1 5.1464 2.5115 0.9025 31 1 5.3191 4.4922 -1.8502 32 1 6.1236 5.7059 -0.8261 33 1 6.2033 3.9817 -0.3922 34 1 2.5122 6.1128 -0.0182 35 1 3.9679 6.9506 -0.6084 36 1 3.1630 5.7371 -1.6317 37 1 5.2890 4.5096 1.8723 38 1 5.2086 6.2341 1.4381 39 1 3.7533 5.3961 2.0275 40 1 1.7989 4.4442 -0.9011 41 1 0.5643 2.3153 -0.9047 42 1 3.0866 -1.0297 2.2362 43 1 1.5452 -1.9198 2.2358 44 1 2.7132 -3.9442 1.4088 45 1 4.2551 -3.0549 1.4090 46 1 5.0693 -6.2464 3.0558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111332019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:27 Heat of formation + Delta-G solvation = -81.536677 kcal Electronic energy + Delta-G solvation = -25949.022223 eV Core-core repulsion = 22350.407575 eV Total energy + Delta-G solvation = -3598.614648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02651 -38.58315 -38.33051 -37.17945 -35.97585 -35.66903 -33.22903 -32.12846 -30.16486 -28.28948 -28.03369 -27.67752 -27.14238 -24.20503 -23.26744 -23.02129 -20.50131 -20.02118 -19.28552 -18.56777 -18.02093 -17.33265 -16.85268 -16.57582 -16.45778 -15.81904 -15.43025 -15.27769 -15.24165 -14.98134 -14.67643 -14.45877 -14.29110 -13.83708 -13.79484 -13.62326 -13.60462 -13.34519 -13.23849 -12.97788 -12.94327 -12.86666 -12.76980 -12.67421 -12.46947 -12.32195 -12.22585 -12.12671 -11.88551 -11.78081 -11.51907 -11.42360 -11.28718 -10.91395 -10.67011 -9.86406 -8.91760 -8.29000 -6.43830 -0.95349 0.42294 0.47356 1.39405 1.42956 1.46897 1.51417 2.35749 2.60519 2.87113 2.98485 3.04368 3.46436 3.75401 3.84325 3.92999 3.95891 4.04584 4.19765 4.20463 4.44450 4.47477 4.50565 4.57692 4.64366 4.66010 4.78607 4.83091 4.84961 4.90548 4.98077 5.07354 5.07930 5.11435 5.14797 5.19457 5.20044 5.27792 5.43773 5.45870 5.50833 5.57706 5.64036 5.66147 5.78601 6.01072 6.13589 6.68926 7.26596 8.83063 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.003347 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.406762 B = 8362.898729 C = 9536.115724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.942 5.942 3 C 0.151 3.849 4 C -0.181 4.181 5 C -0.089 4.089 6 C -0.099 4.099 7 C -0.026 4.026 8 C -0.141 4.141 9 C -0.142 4.142 10 C -0.139 4.139 11 C -0.091 4.091 12 C -0.146 4.146 13 S 2.601 3.399 14 O -0.981 6.981 15 O -0.980 6.980 16 C -0.583 4.583 17 C 0.024 3.976 18 C -0.542 4.542 19 H 0.076 0.924 20 C -0.002 4.002 21 N -0.933 5.933 22 Si 0.975 3.025 23 H -0.262 1.262 24 H -0.283 1.283 25 H -0.263 1.263 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.131 0.869 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.158 0.842 41 H 0.151 0.849 42 H 0.139 0.861 43 H 0.146 0.854 44 H 0.009 0.991 45 H 0.007 0.993 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.445 25.174 -4.435 26.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.768 5.768 3 C 0.056 3.944 4 C -0.203 4.203 5 C -0.107 4.107 6 C -0.100 4.100 7 C -0.026 4.026 8 C -0.198 4.198 9 C -0.199 4.199 10 C -0.196 4.196 11 C -0.109 4.109 12 C -0.168 4.168 13 S 2.700 3.300 14 O -0.971 6.971 15 O -0.970 6.970 16 C -0.716 4.716 17 C -0.015 4.015 18 C -0.581 4.581 19 H 0.094 0.906 20 C -0.201 4.201 21 N -0.572 5.572 22 Si 0.798 3.202 23 H -0.187 1.187 24 H -0.208 1.208 25 H -0.188 1.188 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.149 0.851 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.176 0.824 41 H 0.169 0.831 42 H 0.157 0.843 43 H 0.164 0.836 44 H 0.027 0.973 45 H 0.026 0.974 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.186 24.466 -5.289 25.784 hybrid contribution 0.390 -1.103 1.239 1.704 sum -5.795 23.363 -4.050 24.409 Atomic orbital electron populations 1.22022 0.75236 1.05596 1.04340 1.55403 1.16906 1.18916 1.85559 1.17736 0.92097 0.86186 0.98385 1.21185 0.94979 0.99735 1.04369 1.20881 0.99864 0.91228 0.98750 1.20053 0.95145 0.95076 0.99738 1.19508 0.95091 0.91321 0.96689 1.21921 0.96225 1.02224 0.99437 1.21954 0.99632 0.97477 1.00808 1.21898 1.01564 1.01701 0.94416 1.21340 0.93712 0.97878 0.98010 1.21136 1.02160 0.91245 1.02279 1.05317 0.73151 0.72655 0.78863 1.93512 1.65396 1.62744 1.75478 1.93542 1.44868 1.82908 1.75661 1.30385 1.11224 1.08265 1.21739 1.18816 0.94145 0.89363 0.99217 1.21452 1.37255 1.07568 0.91824 0.90625 1.26121 0.94750 0.95900 1.03289 1.70096 1.38165 1.13307 1.35668 0.85356 0.78939 0.77696 0.78239 1.18664 1.20825 1.18762 0.90602 0.89718 0.87183 0.87278 0.85109 0.93036 0.90909 0.93265 0.91599 0.91310 0.92027 0.93150 0.91064 0.92531 0.82408 0.83137 0.84319 0.83619 0.97279 0.97428 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.46 9.20 127.77 1.18 2.63 16 2 N -0.94 -27.24 3.32 -360.81 -1.20 -28.43 16 3 C 0.15 4.27 6.04 38.21 0.23 4.50 16 4 C -0.18 -5.61 8.42 22.40 0.19 -5.42 16 5 C -0.09 -2.29 8.70 22.25 0.19 -2.09 16 6 C -0.10 -2.04 4.76 -19.84 -0.09 -2.13 16 7 C -0.03 -0.40 0.85 -52.92 -0.05 -0.44 16 8 C -0.14 -2.19 8.29 71.98 0.60 -1.59 16 9 C -0.14 -1.56 7.13 71.98 0.51 -1.04 16 10 C -0.14 -1.97 8.29 71.98 0.60 -1.38 16 11 C -0.09 -1.69 8.97 22.25 0.20 -1.49 16 12 C -0.15 -3.13 9.13 22.40 0.20 -2.93 16 13 S 2.60 99.93 4.74 -56.49 -0.27 99.67 16 14 O -0.98 -42.12 17.09 -127.65 -2.18 -44.30 16 15 O -0.98 -43.39 15.15 -127.65 -1.93 -45.33 16 16 C -0.58 -23.06 5.98 71.98 0.43 -22.63 16 17 C 0.02 1.25 4.98 29.84 0.15 1.40 16 18 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16 19 H 0.08 3.90 7.74 -2.91 -0.02 3.87 16 20 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 21 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 22 Si 0.97 43.30 29.54 68.60 2.03 45.32 16 23 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 26 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.08 1.69 7.79 -2.39 -0.02 1.67 16 28 H 0.11 1.54 7.47 -2.39 -0.02 1.52 16 29 H 0.11 3.77 5.13 -2.91 -0.01 3.75 16 30 H 0.13 3.07 7.09 -2.91 -0.02 3.05 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.05 0.85 7.38 -2.39 -0.02 0.84 16 34 H 0.07 0.64 7.51 -2.39 -0.02 0.63 16 35 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.06 0.65 7.51 -2.39 -0.02 0.64 16 37 H 0.05 0.80 7.38 -2.39 -0.02 0.78 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.16 1.94 5.88 -2.91 -0.02 1.93 16 41 H 0.15 2.36 7.13 -2.91 -0.02 2.34 16 42 H 0.14 4.98 7.20 -2.39 -0.02 4.96 16 43 H 0.15 4.97 8.14 -2.39 -0.02 4.95 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 46 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -75.56 376.57 2.72 -72.84 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.95 Total: 19.21 kcal Atomic # 6 Polarization: -67.35 SS G_CDS: 5.03 Total: -62.32 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -0.91 Total: -85.10 kcal Atomic # 8 Polarization: -85.51 SS G_CDS: -4.12 Total: -89.63 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 99.93 SS G_CDS: -0.27 Total: 99.67 kcal Total: -75.56 2.72 -72.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111332019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.694 kcal (2) G-P(sol) polarization free energy of solvation -75.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds