Wall clock time and date at job start Tue Mar 31 2020 14:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47503 * 2 1 4 4 C 1.52999 * 109.47085 * 120.00214 * 2 1 3 5 5 C 1.52999 * 109.47223 * 299.99730 * 4 2 1 6 6 C 1.50695 * 109.47527 * 180.02562 * 5 4 2 7 7 C 1.38241 * 119.99710 * 89.99486 * 6 5 4 8 8 C 1.38241 * 119.99687 * 179.97438 * 7 6 5 9 9 C 1.38240 * 119.99903 * 359.97438 * 8 7 6 10 10 C 1.38234 * 120.00180 * 0.27348 * 9 8 7 11 11 C 1.38234 * 119.99830 * 359.51155 * 10 9 8 12 12 N 1.46509 * 109.46914 * 239.99785 * 2 1 3 13 13 S 1.65599 * 119.99899 * 37.51554 * 12 2 1 14 14 O 1.42097 * 104.27676 * 176.18727 * 13 12 2 15 15 O 1.42104 * 104.27596 * 304.04686 * 13 12 2 16 16 C 1.81400 * 104.44808 * 60.11557 * 13 12 2 17 17 C 1.52999 * 109.46859 * 171.75329 * 16 13 12 18 18 C 1.50706 * 109.47262 * 179.97438 * 17 16 13 19 19 H 1.07999 * 119.99743 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00265 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99987 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00073 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47233 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46829 * 120.00065 * 22 20 18 25 25 H 1.48500 * 109.47174 * 240.00143 * 22 20 18 26 26 H 1.09008 * 109.47043 * 300.00151 * 1 2 3 27 27 H 1.09002 * 109.47218 * 60.00015 * 1 2 3 28 28 H 1.08997 * 109.47818 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47028 * 174.96499 * 3 2 1 30 30 H 1.08998 * 109.46960 * 294.95759 * 3 2 1 31 31 H 1.08992 * 109.46798 * 54.96191 * 3 2 1 32 32 H 1.09003 * 109.47291 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.47128 * 59.99655 * 4 2 1 34 34 H 1.08996 * 109.47110 * 59.99616 * 5 4 2 35 35 H 1.09004 * 109.46767 * 300.00444 * 5 4 2 36 36 H 1.08000 * 120.00388 * 359.97438 * 7 6 5 37 37 H 1.08002 * 120.00071 * 180.02562 * 8 7 6 38 38 H 1.08003 * 119.99879 * 179.97438 * 9 8 7 39 39 H 1.07994 * 120.00278 * 179.72777 * 10 9 8 40 40 H 1.07998 * 120.00162 * 180.27716 * 11 10 9 41 41 H 0.97000 * 119.99616 * 217.51518 * 12 2 1 42 42 H 1.08999 * 109.47629 * 291.75670 * 16 13 12 43 43 H 1.09000 * 109.47466 * 51.75899 * 16 13 12 44 44 H 1.09000 * 109.47778 * 300.00393 * 17 16 13 45 45 H 1.09006 * 109.46899 * 60.00708 * 17 16 13 46 46 H 0.96995 * 120.00147 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5300 -0.0001 2.4985 6 6 2.0328 -0.7101 3.7289 7 6 3.2408 -0.3443 4.2929 8 6 3.7017 -0.9952 5.4219 9 6 2.9545 -2.0116 5.9873 10 6 1.7491 -2.3808 5.4203 11 6 1.2860 -1.7269 4.2939 12 7 2.0183 -0.6907 -1.1962 13 16 1.2217 -0.5143 -2.6373 14 8 2.0161 -1.2373 -3.5676 15 8 -0.1128 -0.9094 -2.3507 16 6 1.2986 1.2650 -2.9821 17 6 0.7736 1.5340 -4.3938 18 6 0.8368 3.0123 -4.6801 19 1 1.2142 3.6918 -3.9303 20 6 0.4129 3.4972 -5.8991 21 7 -0.0471 2.6697 -6.8120 22 14 0.4920 5.3294 -6.2542 23 1 1.0448 6.0392 -5.0727 24 1 1.3680 5.5684 -7.4292 25 1 -0.8733 5.8370 -6.5431 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1263 1.4437 0.0902 30 1 1.7524 1.9295 -0.9317 31 1 1.6049 1.9816 0.8414 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7489 1.2492 34 1 0.4401 0.0000 2.4985 35 1 1.8934 1.0276 2.4984 36 1 3.8243 0.4501 3.8514 37 1 4.6453 -0.7092 5.8628 38 1 3.3149 -2.5205 6.8691 39 1 1.1674 -3.1778 5.8594 40 1 0.3421 -2.0123 3.8536 41 1 2.8081 -1.2513 -1.1440 42 1 0.6860 1.8023 -2.2581 43 1 2.3314 1.6053 -2.9077 44 1 1.3861 0.9968 -5.1179 45 1 -0.2594 1.1938 -4.4682 46 1 -0.3449 3.0107 -7.6698 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111338710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:46 Heat of formation + Delta-G solvation = -67.071575 kcal Electronic energy + Delta-G solvation = -25556.754205 eV Core-core repulsion = 21958.766811 eV Total energy + Delta-G solvation = -3597.987394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.73915 -38.32073 -36.48314 -35.39537 -33.94992 -33.69507 -31.28645 -31.14965 -30.65436 -28.44408 -27.32592 -25.63966 -24.65192 -22.82836 -21.74778 -21.39262 -19.71341 -18.72682 -17.46752 -17.11321 -16.62665 -16.03863 -15.69479 -15.44636 -15.32633 -14.71527 -14.57875 -14.34880 -14.20539 -13.67332 -13.46960 -13.26137 -13.21095 -13.08322 -12.66494 -12.49071 -12.26894 -12.13293 -11.65467 -11.59914 -11.43313 -11.40694 -11.37310 -11.30358 -11.09530 -11.02322 -10.87957 -10.77849 -10.48938 -10.37241 -10.22907 -9.78119 -9.45099 -9.18779 -9.04898 -8.91534 -8.50864 -6.12726 -4.18152 0.83526 1.09654 1.13392 3.14449 3.24761 3.32129 3.35261 3.52534 4.25523 4.36531 4.40024 4.55059 4.70734 4.71482 4.77741 4.83081 4.87766 4.92008 5.07996 5.17949 5.22555 5.26154 5.30868 5.35261 5.51323 5.58514 5.66760 5.70300 5.73556 5.78203 5.84550 5.86081 5.93066 5.97246 6.15923 6.20099 6.24819 6.33576 6.38981 6.46364 6.56701 6.75103 7.16929 7.30114 7.37327 7.80437 8.17371 8.85533 9.46634 10.98331 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022629 B = 0.002557 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.039690 B =10948.572853 C =11619.843915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.176 3.824 3 C -0.190 4.190 4 C -0.107 4.107 5 C -0.086 4.086 6 C -0.077 4.077 7 C -0.118 4.118 8 C -0.120 4.120 9 C -0.129 4.129 10 C -0.119 4.119 11 C -0.117 4.117 12 N -1.119 6.119 13 S 2.592 3.408 14 O -0.970 6.970 15 O -0.966 6.966 16 C -0.594 4.594 17 C 0.028 3.972 18 C -0.518 4.518 19 H 0.062 0.938 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.411 0.589 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.035 0.965 45 H 0.031 0.969 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.728 -6.627 24.650 26.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.088 3.912 3 C -0.249 4.249 4 C -0.146 4.146 5 C -0.124 4.124 6 C -0.077 4.077 7 C -0.136 4.136 8 C -0.138 4.138 9 C -0.147 4.147 10 C -0.137 4.137 11 C -0.136 4.136 12 N -0.875 5.875 13 S 2.690 3.310 14 O -0.961 6.961 15 O -0.956 6.956 16 C -0.727 4.727 17 C -0.011 4.011 18 C -0.558 4.558 19 H 0.080 0.920 20 C -0.146 4.146 21 N -0.528 5.528 22 Si 0.726 3.274 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.244 0.756 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.094 -7.276 23.966 25.559 hybrid contribution 0.674 1.332 -0.002 1.493 sum 5.768 -5.943 23.965 25.356 Atomic orbital electron populations 1.22648 0.92967 1.04607 1.03440 1.20119 0.94389 0.91680 0.85052 1.22775 1.02193 0.95746 1.04143 1.21773 1.01100 0.99727 0.91971 1.20793 1.01628 0.99137 0.90804 1.19956 0.94751 0.96424 0.96585 1.21096 0.95948 1.00273 0.96285 1.21154 0.99769 0.96518 0.96338 1.21141 0.95360 0.97950 1.00219 1.21158 0.96434 0.99794 0.96336 1.21118 1.00064 0.96121 0.96247 1.55888 1.44623 1.62488 1.24525 1.05525 0.74176 0.79039 0.72232 1.93542 1.70209 1.70844 1.61463 1.93572 1.37257 1.81499 1.83226 1.30685 1.10199 1.21122 1.10692 1.18968 0.96902 0.99622 0.85586 1.21033 1.43345 0.91279 1.00129 0.92004 1.25074 0.95006 0.98330 0.96151 1.69967 1.42117 1.34581 1.06155 0.86425 0.77830 0.84743 0.78353 1.19654 1.20828 1.20810 0.91162 0.90717 0.90420 0.91732 0.90474 0.91021 0.91205 0.90962 0.90084 0.90210 0.86054 0.86237 0.86354 0.86209 0.85969 0.75564 0.85851 0.86006 0.94658 0.95083 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 6.73 37.16 0.25 -1.93 16 2 C 0.18 1.93 0.93 -131.82 -0.12 1.81 16 3 C -0.19 -1.93 8.12 37.16 0.30 -1.63 16 4 C -0.11 -0.95 4.43 -26.73 -0.12 -1.07 16 5 C -0.09 -0.67 4.64 -27.89 -0.13 -0.80 16 6 C -0.08 -0.65 5.13 -104.62 -0.54 -1.19 16 7 C -0.12 -0.96 9.70 -39.58 -0.38 -1.34 16 8 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 9 C -0.13 -0.97 10.05 -39.58 -0.40 -1.37 16 10 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 11 C -0.12 -0.98 9.70 -39.58 -0.38 -1.37 16 12 N -1.12 -14.36 5.42 0.54 0.00 -14.35 16 13 S 2.59 46.03 4.99 -107.50 -0.54 45.50 16 14 O -0.97 -20.57 18.08 -57.54 -1.04 -21.61 16 15 O -0.97 -19.10 14.50 -57.54 -0.83 -19.94 16 16 C -0.59 -11.14 4.18 37.16 0.16 -10.99 16 17 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 18 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 22 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H 0.07 0.67 6.43 -51.92 -0.33 0.33 16 27 H 0.07 1.06 5.21 -51.93 -0.27 0.79 16 28 H 0.08 1.02 7.68 -51.93 -0.40 0.62 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.90 4.20 -51.93 -0.22 0.68 16 31 H 0.07 0.60 6.71 -51.93 -0.35 0.25 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.61 6.37 -51.93 -0.33 0.28 16 35 H 0.08 0.56 6.49 -51.93 -0.34 0.23 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 39 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.41 4.50 8.67 -34.47 -0.30 4.20 16 42 H 0.12 2.07 5.82 -51.92 -0.30 1.77 16 43 H 0.12 2.05 7.90 -51.92 -0.41 1.64 16 44 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -34.44 372.91 -10.80 -45.24 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -7.02 Total: 4.05 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: -2.71 Total: -34.91 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.74 Total: -40.01 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -1.87 Total: -41.55 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 46.03 SS G_CDS: -0.54 Total: 45.50 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.44 -10.80 -45.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111338710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.835 kcal (2) G-P(sol) polarization free energy of solvation -34.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds