Wall clock time and date at job start Tue Mar 31 2020 14:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47503 * 2 1 4 4 C 1.52999 * 109.47085 * 120.00214 * 2 1 3 5 5 C 1.52999 * 109.47223 * 299.99730 * 4 2 1 6 6 C 1.50695 * 109.47527 * 180.02562 * 5 4 2 7 7 C 1.38241 * 119.99710 * 89.99486 * 6 5 4 8 8 C 1.38241 * 119.99687 * 179.97438 * 7 6 5 9 9 C 1.38240 * 119.99903 * 359.97438 * 8 7 6 10 10 C 1.38234 * 120.00180 * 0.27348 * 9 8 7 11 11 C 1.38234 * 119.99830 * 359.51155 * 10 9 8 12 12 N 1.46509 * 109.46914 * 239.99785 * 2 1 3 13 13 S 1.65599 * 119.99899 * 37.51554 * 12 2 1 14 14 O 1.42097 * 104.27676 * 176.18727 * 13 12 2 15 15 O 1.42104 * 104.27596 * 304.04686 * 13 12 2 16 16 C 1.81400 * 104.44808 * 60.11557 * 13 12 2 17 17 C 1.52999 * 109.46859 * 171.75329 * 16 13 12 18 18 C 1.50706 * 109.47262 * 179.97438 * 17 16 13 19 19 H 1.07999 * 119.99743 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00265 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99987 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00073 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47233 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46829 * 120.00065 * 22 20 18 25 25 H 1.48500 * 109.47174 * 240.00143 * 22 20 18 26 26 H 1.09008 * 109.47043 * 300.00151 * 1 2 3 27 27 H 1.09002 * 109.47218 * 60.00015 * 1 2 3 28 28 H 1.08997 * 109.47818 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47028 * 174.96499 * 3 2 1 30 30 H 1.08998 * 109.46960 * 294.95759 * 3 2 1 31 31 H 1.08992 * 109.46798 * 54.96191 * 3 2 1 32 32 H 1.09003 * 109.47291 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.47128 * 59.99655 * 4 2 1 34 34 H 1.08996 * 109.47110 * 59.99616 * 5 4 2 35 35 H 1.09004 * 109.46767 * 300.00444 * 5 4 2 36 36 H 1.08000 * 120.00388 * 359.97438 * 7 6 5 37 37 H 1.08002 * 120.00071 * 180.02562 * 8 7 6 38 38 H 1.08003 * 119.99879 * 179.97438 * 9 8 7 39 39 H 1.07994 * 120.00278 * 179.72777 * 10 9 8 40 40 H 1.07998 * 120.00162 * 180.27716 * 11 10 9 41 41 H 0.97000 * 119.99616 * 217.51518 * 12 2 1 42 42 H 1.08999 * 109.47629 * 291.75670 * 16 13 12 43 43 H 1.09000 * 109.47466 * 51.75899 * 16 13 12 44 44 H 1.09000 * 109.47778 * 300.00393 * 17 16 13 45 45 H 1.09006 * 109.46899 * 60.00708 * 17 16 13 46 46 H 0.96995 * 120.00147 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5300 -0.0001 2.4985 6 6 2.0328 -0.7101 3.7289 7 6 3.2408 -0.3443 4.2929 8 6 3.7017 -0.9952 5.4219 9 6 2.9545 -2.0116 5.9873 10 6 1.7491 -2.3808 5.4203 11 6 1.2860 -1.7269 4.2939 12 7 2.0183 -0.6907 -1.1962 13 16 1.2217 -0.5143 -2.6373 14 8 2.0161 -1.2373 -3.5676 15 8 -0.1128 -0.9094 -2.3507 16 6 1.2986 1.2650 -2.9821 17 6 0.7736 1.5340 -4.3938 18 6 0.8368 3.0123 -4.6801 19 1 1.2142 3.6918 -3.9303 20 6 0.4129 3.4972 -5.8991 21 7 -0.0471 2.6697 -6.8120 22 14 0.4920 5.3294 -6.2542 23 1 1.0448 6.0392 -5.0727 24 1 1.3680 5.5684 -7.4292 25 1 -0.8733 5.8370 -6.5431 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1263 1.4437 0.0902 30 1 1.7524 1.9295 -0.9317 31 1 1.6049 1.9816 0.8414 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7489 1.2492 34 1 0.4401 0.0000 2.4985 35 1 1.8934 1.0276 2.4984 36 1 3.8243 0.4501 3.8514 37 1 4.6453 -0.7092 5.8628 38 1 3.3149 -2.5205 6.8691 39 1 1.1674 -3.1778 5.8594 40 1 0.3421 -2.0123 3.8536 41 1 2.8081 -1.2513 -1.1440 42 1 0.6860 1.8023 -2.2581 43 1 2.3314 1.6053 -2.9077 44 1 1.3861 0.9968 -5.1179 45 1 -0.2594 1.1938 -4.4682 46 1 -0.3449 3.0107 -7.6698 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111338710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:45 Heat of formation + Delta-G solvation = -89.312236 kcal Electronic energy + Delta-G solvation = -25557.718632 eV Core-core repulsion = 21958.766811 eV Total energy + Delta-G solvation = -3598.951821 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.35927 -39.19762 -37.99111 -36.95630 -35.91020 -34.43999 -33.19295 -31.69141 -31.59664 -29.21425 -28.24848 -27.49530 -25.43097 -23.52224 -23.37652 -22.13350 -20.61967 -20.09557 -18.99645 -18.33552 -17.71766 -17.20894 -17.07094 -16.53488 -16.31653 -16.18482 -15.68497 -15.27282 -15.12623 -14.92046 -14.49913 -14.23207 -14.05152 -14.00534 -13.82090 -13.75079 -13.57001 -13.19317 -13.14736 -12.96075 -12.93836 -12.77737 -12.47388 -12.31102 -12.23561 -12.16401 -11.99072 -11.92670 -11.84232 -11.68808 -11.49616 -11.27633 -11.08406 -10.64622 -10.36683 -9.74914 -9.50912 -8.25034 -6.38670 -0.62573 0.52323 0.57198 1.41544 1.42013 1.55295 1.87655 2.38585 2.82786 2.95165 3.08586 3.33636 3.63864 3.88997 3.95169 4.04046 4.08677 4.09831 4.19515 4.23649 4.34606 4.41730 4.46255 4.57431 4.70878 4.73415 4.76974 4.80057 4.86344 5.03837 5.07741 5.12139 5.21756 5.21995 5.26129 5.27481 5.28842 5.37838 5.51707 5.57363 5.66204 5.70124 5.70359 5.82869 6.07256 6.20187 6.21172 6.75436 7.31421 8.87501 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022629 B = 0.002557 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.039690 B =10948.572853 C =11619.843915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.173 3.827 3 C -0.194 4.194 4 C -0.099 4.099 5 C -0.081 4.081 6 C -0.088 4.088 7 C -0.128 4.128 8 C -0.129 4.129 9 C -0.138 4.138 10 C -0.131 4.131 11 C -0.133 4.133 12 N -1.101 6.101 13 S 2.614 3.386 14 O -1.008 7.008 15 O -0.989 6.989 16 C -0.589 4.589 17 C 0.021 3.979 18 C -0.534 4.534 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.935 5.935 22 Si 0.974 3.026 23 H -0.254 1.254 24 H -0.280 1.280 25 H -0.279 1.279 26 H 0.099 0.901 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.423 0.577 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.005 0.995 45 H 0.004 0.996 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.953 -5.138 27.187 28.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.086 3.914 3 C -0.252 4.252 4 C -0.138 4.138 5 C -0.119 4.119 6 C -0.088 4.088 7 C -0.146 4.146 8 C -0.147 4.147 9 C -0.156 4.156 10 C -0.149 4.149 11 C -0.151 4.151 12 N -0.862 5.862 13 S 2.712 3.288 14 O -0.998 6.998 15 O -0.978 6.978 16 C -0.721 4.721 17 C -0.017 4.017 18 C -0.573 4.573 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.575 5.575 22 Si 0.797 3.203 23 H -0.177 1.177 24 H -0.205 1.205 25 H -0.205 1.205 26 H 0.117 0.883 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.259 0.741 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.023 0.977 45 H 0.022 0.978 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.331 -5.786 26.512 27.865 hybrid contribution 0.293 0.790 -0.676 1.081 sum 6.624 -4.996 25.836 27.135 Atomic orbital electron populations 1.22708 0.94018 1.03863 1.03744 1.20357 0.93663 0.92635 0.84770 1.22814 1.03413 0.94671 1.04281 1.21705 1.01693 0.99206 0.91176 1.20769 1.01771 0.99522 0.89842 1.20059 0.95092 0.96671 0.96942 1.21334 0.96019 1.00710 0.96539 1.21447 1.00490 0.96434 0.96341 1.21435 0.95289 0.98048 1.00785 1.21415 0.96868 1.00202 0.96364 1.21322 1.00537 0.96514 0.96734 1.55458 1.44777 1.62692 1.23301 1.04576 0.73581 0.78027 0.72644 1.93485 1.70961 1.71630 1.63771 1.93550 1.38892 1.81621 1.83777 1.30598 1.11592 1.22844 1.07060 1.18819 0.95154 0.98767 0.88994 1.21538 1.42721 0.92436 1.00569 0.90442 1.26133 0.94579 1.03656 0.96075 1.70116 1.43482 1.37112 1.06795 0.85267 0.77917 0.78438 0.78644 1.17741 1.20540 1.20453 0.88280 0.93004 0.91774 0.90184 0.92053 0.88756 0.90111 0.91593 0.89865 0.88941 0.84786 0.84611 0.84717 0.84924 0.85532 0.74066 0.83660 0.83811 0.97653 0.97759 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.27 6.73 71.98 0.48 -3.79 16 2 C 0.17 3.42 0.93 3.60 0.00 3.42 16 3 C -0.19 -3.31 8.12 71.98 0.58 -2.72 16 4 C -0.10 -1.50 4.43 30.59 0.14 -1.37 16 5 C -0.08 -1.05 4.64 29.85 0.14 -0.91 16 6 C -0.09 -1.30 5.13 -19.87 -0.10 -1.40 16 7 C -0.13 -1.78 9.70 22.27 0.22 -1.56 16 8 C -0.13 -1.71 10.05 22.27 0.22 -1.48 16 9 C -0.14 -1.83 10.05 22.27 0.22 -1.60 16 10 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 11 C -0.13 -2.04 9.70 22.27 0.22 -1.82 16 12 N -1.10 -26.78 5.42 -152.21 -0.82 -27.61 16 13 S 2.61 93.64 4.99 -56.49 -0.28 93.36 16 14 O -1.01 -43.69 18.08 -127.65 -2.31 -45.99 16 15 O -0.99 -39.94 14.50 -127.65 -1.85 -41.79 16 16 C -0.59 -22.00 4.18 71.98 0.30 -21.70 16 17 C 0.02 1.12 4.98 29.85 0.15 1.27 16 18 C -0.53 -29.27 9.11 25.60 0.23 -29.03 16 19 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 20 C -0.01 -0.36 5.46 84.65 0.46 0.11 16 21 N -0.94 -57.01 13.29 21.45 0.28 -56.73 16 22 Si 0.97 43.07 29.54 68.60 2.03 45.10 16 23 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 26 H 0.10 1.65 6.43 -2.38 -0.02 1.64 16 27 H 0.05 1.44 5.21 -2.39 -0.01 1.43 16 28 H 0.06 1.64 7.68 -2.39 -0.02 1.62 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.26 4.20 -2.39 -0.01 1.25 16 31 H 0.09 1.20 6.71 -2.39 -0.02 1.19 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.03 6.37 -2.39 -0.02 1.01 16 35 H 0.09 0.96 6.49 -2.38 -0.02 0.95 16 36 H 0.13 1.43 8.06 -2.91 -0.02 1.40 16 37 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 38 H 0.13 1.24 8.06 -2.91 -0.02 1.21 16 39 H 0.13 1.41 8.06 -2.91 -0.02 1.38 16 40 H 0.13 1.71 8.06 -2.91 -0.02 1.68 16 41 H 0.42 8.54 8.67 -96.74 -0.84 7.70 16 42 H 0.15 4.75 5.82 -2.39 -0.01 4.73 16 43 H 0.14 4.67 7.90 -2.39 -0.02 4.65 16 44 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 46 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -76.00 372.91 0.68 -75.32 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.14 Total: 22.57 kcal Atomic # 6 Polarization: -67.71 SS G_CDS: 3.49 Total: -64.22 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -0.54 Total: -84.33 kcal Atomic # 8 Polarization: -83.63 SS G_CDS: -4.16 Total: -87.79 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 93.64 SS G_CDS: -0.28 Total: 93.36 kcal Total: -76.00 0.68 -75.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111338710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.993 kcal (2) G-P(sol) polarization free energy of solvation -75.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds