Wall clock time and date at job start Tue Mar 31 2020 14:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46771 * 2 1 4 4 C 1.53000 * 109.47161 * 298.52116 * 3 2 1 5 5 C 1.53009 * 109.46841 * 293.94351 * 4 3 2 6 6 C 1.52995 * 109.47436 * 58.51857 * 3 2 1 7 7 N 1.46508 * 109.46823 * 65.00146 * 6 3 2 8 8 C 1.46502 * 119.99724 * 270.00003 * 7 6 3 9 9 C 1.50700 * 109.46865 * 263.12132 * 8 7 6 10 10 H 1.08005 * 120.00488 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99923 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99962 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00195 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47208 * 89.99472 * 13 11 9 15 15 H 1.48491 * 109.46933 * 209.99558 * 13 11 9 16 16 H 1.48497 * 109.46838 * 329.99687 * 13 11 9 17 17 C 1.34773 * 119.99969 * 90.00291 * 7 6 3 18 18 O 1.21805 * 120.00333 * 4.16306 * 17 7 6 19 19 C 1.41626 * 119.99874 * 184.16664 * 17 7 6 20 20 C 1.38001 * 126.01335 * 173.83769 * 19 17 7 21 21 C 1.39652 * 106.75002 * 179.97438 * 20 19 17 22 22 C 1.36519 * 107.18869 * 359.97438 * 21 20 19 23 23 S 1.76202 * 125.61284 * 179.97438 * 22 21 20 24 24 C 1.80998 * 100.00132 * 180.02562 * 23 22 21 25 25 O 1.34156 * 108.77557 * 0.02562 * 22 21 20 26 26 H 1.09003 * 109.47216 * 304.19654 * 1 2 3 27 27 H 1.08998 * 109.47527 * 64.19770 * 1 2 3 28 28 H 1.08998 * 109.46646 * 184.19874 * 1 2 3 29 29 H 1.09000 * 109.47423 * 239.99985 * 2 1 3 30 30 H 1.09000 * 109.47246 * 119.99724 * 2 1 3 31 31 H 1.09004 * 109.47262 * 178.52213 * 3 2 1 32 32 H 1.08999 * 109.47256 * 53.94240 * 4 3 2 33 33 H 1.09001 * 109.47589 * 173.94562 * 4 3 2 34 34 H 1.08996 * 109.47344 * 305.48294 * 5 4 3 35 35 H 1.08996 * 109.46807 * 65.48592 * 5 4 3 36 36 H 1.09008 * 109.46841 * 185.48227 * 5 4 3 37 37 H 1.08993 * 109.47529 * 305.00029 * 6 3 2 38 38 H 1.09005 * 109.47177 * 184.99667 * 6 3 2 39 39 H 1.08996 * 109.47239 * 23.11731 * 8 7 6 40 40 H 1.08994 * 109.46768 * 143.12698 * 8 7 6 41 41 H 0.96998 * 120.00487 * 180.02562 * 12 11 9 42 42 H 1.08003 * 126.62512 * 359.95344 * 20 19 17 43 43 H 1.08000 * 126.40204 * 179.73954 * 21 20 19 44 44 H 1.08999 * 109.47115 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.46732 * 300.00069 * 24 23 22 46 46 H 1.08994 * 109.47276 * 59.99815 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5605 2.1529 -1.2674 5 6 2.2211 1.5143 -2.4909 6 6 1.4997 2.1745 1.2301 7 7 2.0547 1.5673 2.4424 8 6 1.3509 0.4607 3.0955 9 6 0.5141 0.9965 4.2285 10 1 0.5074 2.0554 4.4412 11 6 -0.2423 0.1348 4.9943 12 7 -0.2338 -1.1546 4.7357 13 14 -1.2802 0.7990 6.3983 14 1 -2.6338 1.1428 5.8936 15 1 -1.3950 -0.2328 7.4600 16 1 -0.6367 2.0150 6.9572 17 6 3.2125 2.0267 2.9569 18 8 3.7585 2.9950 2.4590 19 6 3.7944 1.3837 4.0765 20 6 5.0268 1.6708 4.6273 21 6 5.1972 0.8020 5.7073 22 6 4.0778 0.0238 5.7796 23 16 3.7832 -1.2417 6.9697 24 6 2.1467 -1.8008 6.4354 25 8 3.2396 0.3805 4.7948 26 1 -0.3634 0.5776 0.8500 27 1 -0.3634 0.4473 -0.9252 28 1 -0.3632 -1.0249 0.0752 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.1296 1.4428 0.0265 32 1 0.4776 2.0593 -1.3489 33 1 1.8313 3.2076 -1.2174 34 1 3.3036 1.5206 -2.3641 35 1 1.8736 0.4866 -2.5963 36 1 1.9565 2.0808 -3.3838 37 1 0.4126 2.0979 1.2503 38 1 1.7892 3.2244 1.1844 39 1 0.7060 -0.0374 2.3716 40 1 2.0774 -0.2519 3.4858 41 1 -0.7662 -1.7608 5.2741 42 1 5.7248 2.4220 4.2883 43 1 6.0558 0.7522 6.3605 44 1 1.8073 -2.6062 7.0867 45 1 1.4434 -0.9697 6.4892 46 1 2.2037 -2.1627 5.4089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112293350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:14 Heat of formation + Delta-G solvation = -27.357985 kcal Electronic energy + Delta-G solvation = -27446.543727 eV Core-core repulsion = 23850.278443 eV Total energy + Delta-G solvation = -3596.265283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.99319 -39.23385 -37.14527 -34.69905 -32.64145 -32.46826 -30.97282 -29.94275 -28.40540 -28.23577 -26.70461 -24.53362 -23.53690 -22.94059 -21.87661 -21.21407 -19.35076 -18.56359 -17.53350 -16.85591 -16.45074 -15.67808 -15.52304 -15.22016 -14.82460 -14.58038 -14.42568 -13.91118 -13.31984 -13.15175 -13.06317 -12.84995 -12.81723 -12.70464 -12.57446 -12.35297 -12.21416 -11.75732 -11.61976 -11.44054 -11.35341 -11.14427 -11.06441 -10.86895 -10.61918 -10.51410 -10.30264 -10.21787 -10.06183 -9.99080 -9.77163 -9.63403 -9.40564 -9.00062 -8.50533 -7.78406 -6.95361 -6.22662 -4.25975 1.51792 1.67355 2.39976 2.73483 3.15212 3.23583 3.29772 3.75197 3.93693 4.12390 4.30767 5.08663 5.09923 5.11261 5.21619 5.32280 5.40996 5.51857 5.61510 5.67807 5.68590 5.87854 5.94565 5.95332 5.97003 6.01103 6.07877 6.11637 6.12922 6.14986 6.23540 6.33939 6.39347 6.52205 6.61352 6.62596 6.67608 6.73679 6.76780 6.89824 7.20969 7.33671 7.55064 7.72836 8.02997 8.20875 8.73385 8.88655 9.37513 10.82604 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011276 B = 0.005547 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.537184 B = 5046.133180 C = 6385.320446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.101 4.101 4 C -0.118 4.118 5 C -0.149 4.149 6 C 0.120 3.880 7 N -0.583 5.583 8 C 0.226 3.774 9 C -0.521 4.521 10 H 0.056 0.944 11 C 0.070 3.930 12 N -0.887 5.887 13 Si 0.879 3.121 14 H -0.279 1.279 15 H -0.283 1.283 16 H -0.273 1.273 17 C 0.594 3.406 18 O -0.561 6.561 19 C -0.061 4.061 20 C -0.123 4.123 21 C -0.206 4.206 22 C -0.004 4.004 23 S -0.056 6.056 24 C -0.133 4.133 25 O -0.095 6.095 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.263 0.737 42 H 0.156 0.844 43 H 0.151 0.849 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.533 -1.005 -4.161 6.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.120 4.120 4 C -0.156 4.156 5 C -0.206 4.206 6 C -0.003 4.003 7 N -0.312 5.312 8 C 0.107 3.893 9 C -0.560 4.560 10 H 0.075 0.925 11 C -0.132 4.132 12 N -0.526 5.526 13 Si 0.706 3.294 14 H -0.205 1.205 15 H -0.208 1.208 16 H -0.198 1.198 17 C 0.384 3.616 18 O -0.444 6.444 19 C -0.118 4.118 20 C -0.145 4.145 21 C -0.233 4.233 22 C -0.170 4.170 23 S 0.181 5.819 24 C -0.301 4.301 25 O 0.011 5.989 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.173 0.827 43 H 0.168 0.832 44 H 0.111 0.889 45 H 0.127 0.873 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.965 -1.335 -3.470 6.203 hybrid contribution -1.362 0.696 0.051 1.531 sum 3.603 -0.639 -3.419 5.007 Atomic orbital electron populations 1.21918 0.95862 1.01788 1.01678 1.21577 0.96303 0.96046 1.01730 1.21574 1.00500 0.95642 0.94330 1.21535 1.00671 0.99387 0.94023 1.21774 1.00669 1.00762 0.97438 1.21484 0.98708 0.97073 0.83041 1.48188 1.21414 1.35824 1.25745 1.19873 0.92549 0.83997 0.92915 1.21457 1.26137 0.94190 1.14216 0.92525 1.24755 0.96476 0.94753 0.97213 1.69939 1.40802 1.01826 1.40050 0.86788 0.81107 0.79173 0.82314 1.20484 1.20832 1.19810 1.15488 0.81393 0.83205 0.81516 1.90788 1.63998 1.27209 1.62451 1.21313 0.95696 0.95738 0.99072 1.21945 0.96153 1.00564 0.95862 1.21304 0.99472 0.99950 1.02593 1.24790 0.93688 1.02807 0.95709 1.85371 1.25503 1.36000 1.35032 1.23835 0.94175 1.06106 1.05982 1.85075 1.39198 1.41633 1.32945 0.91252 0.93325 0.93107 0.92720 0.91308 0.91345 0.91563 0.92161 0.92961 0.92658 0.93259 0.89948 0.90845 0.92799 0.93424 0.92699 0.82668 0.83158 0.88907 0.87346 0.88122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 8.45 37.16 0.31 -2.00 16 2 C -0.12 -1.82 4.92 -26.73 -0.13 -1.95 16 3 C -0.10 -1.55 2.36 -90.62 -0.21 -1.77 16 4 C -0.12 -1.50 5.23 -26.73 -0.14 -1.64 16 5 C -0.15 -1.67 9.55 37.16 0.36 -1.31 16 6 C 0.12 2.16 4.67 -4.04 -0.02 2.14 16 7 N -0.58 -12.21 2.30 -178.46 -0.41 -12.63 16 8 C 0.23 5.10 3.63 -5.19 -0.02 5.09 16 9 C -0.52 -12.96 8.35 -34.44 -0.29 -13.24 16 10 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 11 C 0.07 1.70 4.16 -17.82 -0.07 1.63 16 12 N -0.89 -21.50 11.73 55.43 0.65 -20.85 16 13 Si 0.88 19.74 29.41 -169.99 -5.00 14.74 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 17 C 0.59 13.09 7.40 -14.97 -0.11 12.98 16 18 O -0.56 -12.92 16.35 5.09 0.08 -12.84 16 19 C -0.06 -1.30 6.61 -38.38 -0.25 -1.55 16 20 C -0.12 -2.27 10.58 -39.14 -0.41 -2.68 16 21 C -0.21 -3.54 10.82 -39.67 -0.43 -3.97 16 22 C 0.00 -0.09 7.28 30.11 0.22 0.13 16 23 S -0.06 -0.93 22.90 -107.50 -2.46 -3.39 16 24 C -0.13 -2.37 9.22 101.05 0.93 -1.44 16 25 O -0.09 -2.05 5.84 3.34 0.02 -2.03 16 26 H 0.07 1.17 5.00 -51.93 -0.26 0.91 16 27 H 0.05 0.62 6.56 -51.93 -0.34 0.28 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.75 6.66 -51.93 -0.35 0.40 16 30 H 0.07 1.22 6.14 -51.93 -0.32 0.90 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.07 0.80 6.26 -51.93 -0.33 0.48 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.60 6.83 -51.93 -0.35 0.25 16 36 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.08 1.46 5.98 -51.93 -0.31 1.15 16 38 H 0.07 1.35 7.37 -51.93 -0.38 0.97 16 39 H 0.05 1.23 4.58 -51.93 -0.24 0.99 16 40 H 0.05 1.16 5.36 -51.93 -0.28 0.88 16 41 H 0.26 6.15 8.31 -40.82 -0.34 5.81 16 42 H 0.16 2.54 8.06 -52.48 -0.42 2.12 16 43 H 0.15 2.10 8.06 -52.49 -0.42 1.68 16 44 H 0.09 1.41 8.14 -51.92 -0.42 0.99 16 45 H 0.11 2.26 5.91 -51.92 -0.31 1.95 16 46 H 0.10 1.94 8.10 -51.92 -0.42 1.52 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -26.02 368.92 -8.64 -34.66 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.81 Total: 6.35 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -0.27 Total: -9.59 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.24 Total: -33.47 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.10 Total: -14.86 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.00 Total: 14.74 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.46 Total: -3.39 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -26.02 -8.64 -34.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112293350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.305 kcal (2) G-P(sol) polarization free energy of solvation -26.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds