Wall clock time and date at job start Tue Mar 31 2020 14:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46771 * 2 1 4 4 C 1.53000 * 109.47161 * 298.52116 * 3 2 1 5 5 C 1.53009 * 109.46841 * 293.94351 * 4 3 2 6 6 C 1.52995 * 109.47436 * 58.51857 * 3 2 1 7 7 N 1.46508 * 109.46823 * 65.00146 * 6 3 2 8 8 C 1.46502 * 119.99724 * 270.00003 * 7 6 3 9 9 C 1.50700 * 109.46865 * 263.12132 * 8 7 6 10 10 H 1.08005 * 120.00488 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99923 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99962 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00195 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47208 * 89.99472 * 13 11 9 15 15 H 1.48491 * 109.46933 * 209.99558 * 13 11 9 16 16 H 1.48497 * 109.46838 * 329.99687 * 13 11 9 17 17 C 1.34773 * 119.99969 * 90.00291 * 7 6 3 18 18 O 1.21805 * 120.00333 * 4.16306 * 17 7 6 19 19 C 1.41626 * 119.99874 * 184.16664 * 17 7 6 20 20 C 1.38001 * 126.01335 * 173.83769 * 19 17 7 21 21 C 1.39652 * 106.75002 * 179.97438 * 20 19 17 22 22 C 1.36519 * 107.18869 * 359.97438 * 21 20 19 23 23 S 1.76202 * 125.61284 * 179.97438 * 22 21 20 24 24 C 1.80998 * 100.00132 * 180.02562 * 23 22 21 25 25 O 1.34156 * 108.77557 * 0.02562 * 22 21 20 26 26 H 1.09003 * 109.47216 * 304.19654 * 1 2 3 27 27 H 1.08998 * 109.47527 * 64.19770 * 1 2 3 28 28 H 1.08998 * 109.46646 * 184.19874 * 1 2 3 29 29 H 1.09000 * 109.47423 * 239.99985 * 2 1 3 30 30 H 1.09000 * 109.47246 * 119.99724 * 2 1 3 31 31 H 1.09004 * 109.47262 * 178.52213 * 3 2 1 32 32 H 1.08999 * 109.47256 * 53.94240 * 4 3 2 33 33 H 1.09001 * 109.47589 * 173.94562 * 4 3 2 34 34 H 1.08996 * 109.47344 * 305.48294 * 5 4 3 35 35 H 1.08996 * 109.46807 * 65.48592 * 5 4 3 36 36 H 1.09008 * 109.46841 * 185.48227 * 5 4 3 37 37 H 1.08993 * 109.47529 * 305.00029 * 6 3 2 38 38 H 1.09005 * 109.47177 * 184.99667 * 6 3 2 39 39 H 1.08996 * 109.47239 * 23.11731 * 8 7 6 40 40 H 1.08994 * 109.46768 * 143.12698 * 8 7 6 41 41 H 0.96998 * 120.00487 * 180.02562 * 12 11 9 42 42 H 1.08003 * 126.62512 * 359.95344 * 20 19 17 43 43 H 1.08000 * 126.40204 * 179.73954 * 21 20 19 44 44 H 1.08999 * 109.47115 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.46732 * 300.00069 * 24 23 22 46 46 H 1.08994 * 109.47276 * 59.99815 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5605 2.1529 -1.2674 5 6 2.2211 1.5143 -2.4909 6 6 1.4997 2.1745 1.2301 7 7 2.0547 1.5673 2.4424 8 6 1.3509 0.4607 3.0955 9 6 0.5141 0.9965 4.2285 10 1 0.5074 2.0554 4.4412 11 6 -0.2423 0.1348 4.9943 12 7 -0.2338 -1.1546 4.7357 13 14 -1.2802 0.7990 6.3983 14 1 -2.6338 1.1428 5.8936 15 1 -1.3950 -0.2328 7.4600 16 1 -0.6367 2.0150 6.9572 17 6 3.2125 2.0267 2.9569 18 8 3.7585 2.9950 2.4590 19 6 3.7944 1.3837 4.0765 20 6 5.0268 1.6708 4.6273 21 6 5.1972 0.8020 5.7073 22 6 4.0778 0.0238 5.7796 23 16 3.7832 -1.2417 6.9697 24 6 2.1467 -1.8008 6.4354 25 8 3.2396 0.3805 4.7948 26 1 -0.3634 0.5776 0.8500 27 1 -0.3634 0.4473 -0.9252 28 1 -0.3632 -1.0249 0.0752 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.1296 1.4428 0.0265 32 1 0.4776 2.0593 -1.3489 33 1 1.8313 3.2076 -1.2174 34 1 3.3036 1.5206 -2.3641 35 1 1.8736 0.4866 -2.5963 36 1 1.9565 2.0808 -3.3838 37 1 0.4126 2.0979 1.2503 38 1 1.7892 3.2244 1.1844 39 1 0.7060 -0.0374 2.3716 40 1 2.0774 -0.2519 3.4858 41 1 -0.7662 -1.7608 5.2741 42 1 5.7248 2.4220 4.2883 43 1 6.0558 0.7522 6.3605 44 1 1.8073 -2.6062 7.0867 45 1 1.4434 -0.9697 6.4892 46 1 2.2037 -2.1627 5.4089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112293350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:14 Heat of formation + Delta-G solvation = -38.572394 kcal Electronic energy + Delta-G solvation = -27447.030020 eV Core-core repulsion = 23850.278443 eV Total energy + Delta-G solvation = -3596.751577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.51030 -40.82647 -38.55823 -36.32375 -34.46989 -33.96668 -32.10207 -31.42648 -29.95875 -29.70435 -28.33700 -25.91238 -25.16322 -24.29706 -23.33275 -22.66575 -20.84442 -19.88170 -19.10871 -18.61531 -18.08206 -17.29049 -17.09581 -16.57116 -16.40401 -16.13251 -15.88994 -15.36066 -14.81996 -14.51704 -14.48442 -14.35900 -14.26258 -14.09909 -14.07384 -13.76720 -13.64370 -13.14586 -13.03352 -12.90757 -12.76138 -12.63180 -12.58110 -12.29565 -12.09600 -12.05815 -11.89088 -11.72410 -11.44505 -11.33384 -11.22746 -11.11978 -11.05513 -10.52190 -10.36774 -9.46439 -8.35615 -8.12440 -6.21545 -0.05399 0.27097 0.97453 1.29104 1.33678 1.39221 1.46134 2.17379 2.30121 2.40685 2.62287 3.15666 3.78174 3.90226 3.94119 3.99020 4.01970 4.32004 4.37488 4.41549 4.43117 4.48817 4.56927 4.59788 4.65268 4.72525 4.82510 4.85071 4.90073 4.95369 4.97903 5.07076 5.13463 5.18412 5.28039 5.34723 5.36357 5.37717 5.44409 5.46851 5.64210 5.71558 5.75967 5.96407 6.14364 6.46967 6.83018 7.17006 7.43933 8.91412 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011276 B = 0.005547 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.537184 B = 5046.133180 C = 6385.320446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.091 4.091 4 C -0.113 4.113 5 C -0.146 4.146 6 C 0.117 3.883 7 N -0.585 5.585 8 C 0.248 3.752 9 C -0.536 4.536 10 H 0.031 0.969 11 C 0.050 3.950 12 N -0.891 5.891 13 Si 0.920 3.080 14 H -0.278 1.278 15 H -0.269 1.269 16 H -0.287 1.287 17 C 0.587 3.413 18 O -0.581 6.581 19 C -0.105 4.105 20 C -0.109 4.109 21 C -0.194 4.194 22 C -0.030 4.030 23 S -0.005 6.005 24 C -0.133 4.133 25 O -0.117 6.117 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.032 0.968 41 H 0.268 0.732 42 H 0.175 0.825 43 H 0.188 0.812 44 H 0.119 0.881 45 H 0.078 0.922 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.966 -1.611 -4.083 6.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.110 4.110 4 C -0.151 4.151 5 C -0.203 4.203 6 C -0.006 4.006 7 N -0.313 5.313 8 C 0.128 3.872 9 C -0.575 4.575 10 H 0.050 0.950 11 C -0.151 4.151 12 N -0.530 5.530 13 Si 0.746 3.254 14 H -0.204 1.204 15 H -0.194 1.194 16 H -0.213 1.213 17 C 0.378 3.622 18 O -0.467 6.467 19 C -0.161 4.161 20 C -0.131 4.131 21 C -0.221 4.221 22 C -0.195 4.195 23 S 0.233 5.767 24 C -0.301 4.301 25 O -0.012 6.012 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.192 0.808 43 H 0.205 0.795 44 H 0.138 0.862 45 H 0.097 0.903 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.389 -1.957 -3.401 6.666 hybrid contribution -1.454 0.855 0.106 1.690 sum 3.935 -1.101 -3.295 5.249 Atomic orbital electron populations 1.21843 0.95329 1.01480 1.01884 1.21509 0.96633 0.95717 1.01222 1.21469 0.99264 0.95808 0.94488 1.21514 1.01346 0.99196 0.93075 1.21750 1.00206 1.01170 0.97177 1.21658 0.98776 0.96917 0.83220 1.48219 1.21228 1.35416 1.26449 1.19487 0.91632 0.83986 0.92101 1.21419 1.27425 0.93024 1.15656 0.95033 1.25092 0.96843 0.94972 0.98223 1.69971 1.40659 1.02044 1.40307 0.86174 0.79823 0.78442 0.80924 1.20424 1.19383 1.21296 1.15701 0.81520 0.83120 0.81864 1.90746 1.64573 1.28034 1.63359 1.21421 0.97250 0.97272 1.00174 1.22299 0.95100 1.00310 0.95343 1.21714 0.99782 0.98407 1.02162 1.25537 0.94211 1.03895 0.95819 1.85099 1.23664 1.34511 1.33413 1.23679 0.94962 1.05769 1.05693 1.85023 1.40257 1.42087 1.33824 0.93683 0.90744 0.93258 0.90620 0.94348 0.93071 0.90557 0.92082 0.93436 0.92168 0.91406 0.89884 0.91569 0.93263 0.95032 0.92242 0.80765 0.79472 0.86216 0.90258 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 8.45 71.98 0.61 -3.74 16 2 C -0.11 -3.46 4.92 30.59 0.15 -3.31 16 3 C -0.09 -2.82 2.36 -10.79 -0.03 -2.84 16 4 C -0.11 -2.74 5.23 30.60 0.16 -2.58 16 5 C -0.15 -2.95 9.55 71.99 0.69 -2.27 16 6 C 0.12 4.34 4.67 86.38 0.40 4.75 16 7 N -0.59 -25.67 2.30 -836.71 -1.93 -27.60 16 8 C 0.25 11.70 3.63 85.63 0.31 12.01 16 9 C -0.54 -27.62 8.35 25.60 0.21 -27.40 16 10 H 0.03 1.75 7.81 -2.91 -0.02 1.73 16 11 C 0.05 2.50 4.16 84.66 0.35 2.85 16 12 N -0.89 -43.49 11.73 21.45 0.25 -43.24 16 13 Si 0.92 40.61 29.41 68.60 2.02 42.63 16 14 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 15 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 16 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 17 C 0.59 26.88 7.40 85.08 0.63 27.51 16 18 O -0.58 -27.62 16.35 -4.69 -0.08 -27.70 16 19 C -0.10 -4.55 6.61 23.05 0.15 -4.40 16 20 C -0.11 -3.92 10.58 22.56 0.24 -3.68 16 21 C -0.19 -6.29 10.82 22.21 0.24 -6.04 16 22 C -0.03 -1.11 7.28 67.42 0.49 -0.62 16 23 S 0.00 -0.14 22.90 -56.49 -1.29 -1.44 16 24 C -0.13 -4.65 9.22 113.37 1.04 -3.60 16 25 O -0.12 -5.17 5.84 -10.98 -0.06 -5.23 16 26 H 0.04 1.54 5.00 -2.39 -0.01 1.53 16 27 H 0.07 1.77 6.56 -2.39 -0.02 1.76 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 1.99 6.66 -2.39 -0.02 1.97 16 30 H 0.04 1.40 6.14 -2.39 -0.01 1.39 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 1.69 6.26 -2.39 -0.01 1.68 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.16 6.83 -2.39 -0.02 1.14 16 36 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.08 3.05 5.98 -2.39 -0.01 3.03 16 38 H 0.07 2.53 7.37 -2.38 -0.02 2.51 16 39 H 0.05 2.35 4.58 -2.39 -0.01 2.34 16 40 H 0.03 1.63 5.36 -2.39 -0.01 1.62 16 41 H 0.27 12.42 8.31 -92.71 -0.77 11.65 16 42 H 0.17 5.48 8.06 -2.91 -0.02 5.46 16 43 H 0.19 4.55 8.06 -2.91 -0.02 4.52 16 44 H 0.12 3.44 8.14 -2.40 -0.02 3.42 16 45 H 0.08 3.29 5.91 -2.40 -0.01 3.28 16 46 H 0.08 3.17 8.10 -2.40 -0.02 3.16 16 Total: -1.00 -57.21 368.92 5.55 -51.66 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.99 Total: 24.29 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 5.66 Total: -13.38 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -1.68 Total: -70.83 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.14 Total: -32.93 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.02 Total: 42.63 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -1.29 Total: -1.44 kcal Total: -57.21 5.55 -51.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112293350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.085 kcal (2) G-P(sol) polarization free energy of solvation -57.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds