Wall clock time and date at job start Tue Mar 31 2020 15:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46785 * 2 1 4 4 C 1.53001 * 109.46675 * 119.99182 * 2 1 3 5 5 N 1.46507 * 109.46875 * 63.01753 * 4 2 1 6 6 C 1.46506 * 119.99652 * 273.09598 * 5 4 2 7 7 C 1.50697 * 109.46729 * 274.37016 * 6 5 4 8 8 H 1.08001 * 120.00684 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99794 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99787 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00242 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47023 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47249 * 119.99591 * 11 9 7 14 14 H 1.48497 * 109.47150 * 240.00073 * 11 9 7 15 15 S 1.65590 * 120.00165 * 93.09596 * 5 4 2 16 16 O 1.42107 * 104.27772 * 153.92788 * 15 5 4 17 17 O 1.42093 * 104.27944 * 26.07260 * 15 5 4 18 18 C 1.81405 * 104.45268 * 269.99659 * 15 5 4 19 19 C 1.52992 * 109.47582 * 180.02562 * 18 15 5 20 20 C 1.50694 * 109.47228 * 180.02562 * 19 18 15 21 21 C 1.38243 * 120.00023 * 90.00424 * 20 19 18 22 22 C 1.38228 * 120.00046 * 179.97438 * 21 20 19 23 23 C 1.38232 * 120.00384 * 359.97438 * 22 21 20 24 24 C 1.38239 * 119.99508 * 0.27272 * 23 22 21 25 25 C 1.38231 * 120.00248 * 359.51579 * 24 23 22 26 26 H 1.09008 * 109.46981 * 172.75109 * 1 2 3 27 27 H 1.09001 * 109.47677 * 292.75268 * 1 2 3 28 28 H 1.09005 * 109.47029 * 52.75658 * 1 2 3 29 29 H 1.08989 * 109.47131 * 239.99526 * 2 1 3 30 30 H 1.08997 * 109.46580 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46724 * 299.99592 * 3 2 1 32 32 H 1.09002 * 109.47202 * 59.99477 * 3 2 1 33 33 H 1.08994 * 109.47693 * 303.01241 * 4 2 1 34 34 H 1.08999 * 109.46585 * 183.00747 * 4 2 1 35 35 H 1.08995 * 109.46978 * 34.36755 * 6 5 4 36 36 H 1.08998 * 109.46869 * 154.36864 * 6 5 4 37 37 H 0.97005 * 119.99825 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.46454 * 60.00011 * 18 15 5 39 39 H 1.09002 * 109.46878 * 300.00857 * 18 15 5 40 40 H 1.09000 * 109.46870 * 60.00103 * 19 18 15 41 41 H 1.09003 * 109.47377 * 300.00773 * 19 18 15 42 42 H 1.08002 * 119.99736 * 359.97242 * 21 20 19 43 43 H 1.08001 * 120.00071 * 179.97438 * 22 21 20 44 44 H 1.07996 * 120.00361 * 180.02562 * 23 22 21 45 45 H 1.08003 * 119.99842 * 179.72768 * 24 23 22 46 46 H 1.07998 * 120.00269 * 180.27561 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 1.6117 -2.1217 1.2137 6 6 0.3019 -2.5011 1.7492 7 6 0.4154 -2.7382 3.2330 8 1 1.3678 -2.6179 3.7279 9 6 -0.6967 -3.1087 3.9590 10 7 -1.8566 -3.2547 3.3565 11 14 -0.5560 -3.4033 5.7982 12 1 0.8463 -3.1750 6.2302 13 1 -1.4553 -2.4673 6.5197 14 1 -0.9470 -4.8022 6.1068 15 16 2.6083 -3.2760 0.5682 16 8 2.2205 -4.4779 1.2197 17 8 3.9150 -2.7425 0.7324 18 6 2.1591 -3.3308 -1.1885 19 6 3.0208 -4.3737 -1.9030 20 6 2.6481 -4.4188 -3.3624 21 6 3.2978 -3.6002 -4.2673 22 6 2.9563 -3.6419 -5.6061 23 6 1.9655 -4.5025 -6.0403 24 6 1.3123 -5.3174 -5.1346 25 6 1.6568 -5.2789 -3.7965 26 1 -0.3633 -1.0195 -0.1297 27 1 -0.3634 0.3974 0.9477 28 1 -0.3633 0.6220 -0.8181 29 1 1.8933 -0.5139 -0.8898 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6765 1.9564 0.8899 33 1 1.6332 -0.2393 2.1385 34 1 3.1286 -0.6746 1.2767 35 1 -0.4128 -1.6995 1.5629 36 1 -0.0400 -3.4135 1.2605 37 1 -2.6391 -3.5150 3.8673 38 1 2.3267 -2.3516 -1.6370 39 1 1.1074 -3.6001 -1.2864 40 1 2.8529 -5.3528 -1.4543 41 1 4.0726 -4.1049 -1.8050 42 1 4.0722 -2.9280 -3.9282 43 1 3.4636 -3.0020 -6.3130 44 1 1.6990 -4.5353 -7.0863 45 1 0.5351 -5.9866 -5.4731 46 1 1.1495 -5.9187 -3.0896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112703408.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:15 Heat of formation + Delta-G solvation = -63.590941 kcal Electronic energy + Delta-G solvation = -26284.499672 eV Core-core repulsion = 22686.663210 eV Total energy + Delta-G solvation = -3597.836462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.42195 -37.23125 -36.46628 -35.28525 -34.41215 -33.62848 -32.06607 -31.02653 -29.67269 -27.65731 -26.76861 -25.04018 -24.33414 -22.71354 -22.19468 -21.13681 -19.96165 -18.18765 -17.19010 -16.69886 -16.45219 -16.04318 -15.81210 -15.41378 -15.15031 -14.60722 -14.45033 -14.00385 -13.79235 -13.49174 -13.44305 -13.25645 -13.21343 -12.62610 -12.34752 -12.20626 -12.14740 -11.78384 -11.58880 -11.50412 -11.46534 -11.38602 -11.21661 -11.15725 -11.13235 -11.02807 -10.85777 -10.59599 -10.30872 -10.27397 -10.12208 -9.89395 -9.63436 -9.06264 -8.84343 -8.40208 -7.95862 -6.03194 -4.05369 0.80470 1.22449 1.26090 3.32825 3.33567 3.40886 3.47408 3.63567 4.40024 4.47379 4.53052 4.63378 4.73775 4.86432 4.87556 4.98998 5.02929 5.12457 5.23432 5.31291 5.33804 5.36483 5.40767 5.42670 5.63676 5.69758 5.84330 5.88457 5.89377 5.92130 5.98642 6.10353 6.16975 6.31530 6.32088 6.35216 6.36714 6.49324 6.54827 6.62470 6.78159 6.86186 7.25115 7.42023 7.63920 7.95118 8.25694 8.97089 9.59004 11.05386 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013269 B = 0.003855 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.626884 B = 7261.583765 C = 8009.987499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.144 4.144 4 C 0.125 3.875 5 N -0.981 5.981 6 C 0.249 3.751 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.061 3.939 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.283 1.283 15 S 2.602 3.398 16 O -0.936 6.936 17 O -0.974 6.974 18 C -0.638 4.638 19 C -0.072 4.072 20 C -0.069 4.069 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.118 4.118 25 C -0.115 4.115 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.035 0.965 37 H 0.262 0.738 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.962 2.819 -16.992 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.139 4.139 3 C -0.202 4.202 4 C -0.002 4.002 5 N -0.819 5.819 6 C 0.127 3.873 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.141 4.141 10 N -0.537 5.537 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.209 1.209 15 S 2.693 3.307 16 O -0.926 6.926 17 O -0.964 6.964 18 C -0.764 4.764 19 C -0.111 4.111 20 C -0.070 4.070 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.145 4.145 24 C -0.136 4.136 25 C -0.134 4.134 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.145 0.855 39 H 0.150 0.850 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.395 2.269 -16.474 18.199 hybrid contribution -0.636 0.074 0.351 0.730 sum 6.759 2.342 -16.123 17.639 Atomic orbital electron populations 1.21933 0.94505 1.02397 1.01431 1.21680 0.97193 0.96261 0.98795 1.21773 1.00778 0.95894 1.01741 1.21320 0.99401 0.81529 0.97960 1.57397 1.33662 1.17992 1.72809 1.19268 0.77608 0.96349 0.94067 1.21533 0.95402 1.45996 0.93111 0.92122 1.24909 0.95189 0.95261 0.98716 1.69924 0.99717 1.48152 1.35952 0.86489 0.78167 0.77870 0.85206 1.19668 1.21081 1.20900 1.05222 0.74135 0.74703 0.76609 1.93634 1.82784 1.46036 1.70170 1.93504 1.38008 1.79489 1.85415 1.30960 1.10627 1.07192 1.27635 1.20299 0.99386 0.98917 0.92467 1.19710 0.96386 0.96326 0.94622 1.21098 1.00210 0.99072 0.93194 1.21127 0.97897 0.99034 0.95709 1.21147 0.96933 0.96891 0.99552 1.21161 0.99770 0.99323 0.93336 1.21163 0.97153 0.98953 0.96083 0.91569 0.92039 0.93879 0.92213 0.92733 0.92946 0.92345 0.89434 0.90261 0.93417 0.94752 0.92864 0.85515 0.84981 0.89379 0.89646 0.85892 0.86113 0.86245 0.85998 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 7.77 37.16 0.29 -1.85 16 2 C -0.12 -1.65 3.14 -90.62 -0.28 -1.93 16 3 C -0.14 -1.66 9.19 37.16 0.34 -1.32 16 4 C 0.12 2.11 5.19 -4.04 -0.02 2.09 16 5 N -0.98 -19.44 2.56 -115.66 -0.30 -19.73 16 6 C 0.25 5.96 4.19 -5.19 -0.02 5.94 16 7 C -0.52 -14.42 9.39 -34.44 -0.32 -14.74 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.90 -25.84 13.29 55.43 0.74 -25.11 16 11 Si 0.89 21.87 29.54 -169.99 -5.02 16.84 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 S 2.60 48.79 5.37 -107.50 -0.58 48.21 16 16 O -0.94 -21.61 17.00 -57.54 -0.98 -22.59 16 17 O -0.97 -19.33 16.54 -57.54 -0.95 -20.29 16 18 C -0.64 -8.82 6.16 37.15 0.23 -8.59 16 19 C -0.07 -0.91 5.35 -27.89 -0.15 -1.06 16 20 C -0.07 -0.83 5.13 -104.62 -0.54 -1.37 16 21 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 22 C -0.12 -1.16 10.05 -39.59 -0.40 -1.55 16 23 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 25 C -0.12 -1.32 9.70 -39.59 -0.38 -1.71 16 26 H 0.07 1.07 6.26 -51.92 -0.33 0.75 16 27 H 0.06 0.97 7.96 -51.93 -0.41 0.56 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.76 6.75 -51.94 -0.35 0.41 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.55 8.10 -51.93 -0.42 1.13 16 34 H 0.08 1.29 6.85 -51.93 -0.36 0.94 16 35 H 0.05 1.13 5.47 -51.93 -0.28 0.85 16 36 H 0.03 0.88 7.63 -51.93 -0.40 0.48 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.13 1.52 6.75 -51.93 -0.35 1.17 16 39 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 40 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 41 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 42 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 46 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 385.18 15.07 5.80 5.80 Total: -1.00 -33.29 385.18 -11.33 -44.62 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.51 Total: 1.57 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: -2.54 Total: -29.33 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.44 Total: -44.84 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -1.93 Total: -42.87 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 48.79 SS G_CDS: -0.58 Total: 48.21 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.29 -11.33 -44.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112703408.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.975 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds