Wall clock time and date at job start Tue Mar 31 2020 15:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46785 * 2 1 4 4 C 1.53001 * 109.46675 * 119.99182 * 2 1 3 5 5 N 1.46507 * 109.46875 * 63.01753 * 4 2 1 6 6 C 1.46506 * 119.99652 * 273.09598 * 5 4 2 7 7 C 1.50697 * 109.46729 * 274.37016 * 6 5 4 8 8 H 1.08001 * 120.00684 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99794 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99787 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00242 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47023 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47249 * 119.99591 * 11 9 7 14 14 H 1.48497 * 109.47150 * 240.00073 * 11 9 7 15 15 S 1.65590 * 120.00165 * 93.09596 * 5 4 2 16 16 O 1.42107 * 104.27772 * 153.92788 * 15 5 4 17 17 O 1.42093 * 104.27944 * 26.07260 * 15 5 4 18 18 C 1.81405 * 104.45268 * 269.99659 * 15 5 4 19 19 C 1.52992 * 109.47582 * 180.02562 * 18 15 5 20 20 C 1.50694 * 109.47228 * 180.02562 * 19 18 15 21 21 C 1.38243 * 120.00023 * 90.00424 * 20 19 18 22 22 C 1.38228 * 120.00046 * 179.97438 * 21 20 19 23 23 C 1.38232 * 120.00384 * 359.97438 * 22 21 20 24 24 C 1.38239 * 119.99508 * 0.27272 * 23 22 21 25 25 C 1.38231 * 120.00248 * 359.51579 * 24 23 22 26 26 H 1.09008 * 109.46981 * 172.75109 * 1 2 3 27 27 H 1.09001 * 109.47677 * 292.75268 * 1 2 3 28 28 H 1.09005 * 109.47029 * 52.75658 * 1 2 3 29 29 H 1.08989 * 109.47131 * 239.99526 * 2 1 3 30 30 H 1.08997 * 109.46580 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46724 * 299.99592 * 3 2 1 32 32 H 1.09002 * 109.47202 * 59.99477 * 3 2 1 33 33 H 1.08994 * 109.47693 * 303.01241 * 4 2 1 34 34 H 1.08999 * 109.46585 * 183.00747 * 4 2 1 35 35 H 1.08995 * 109.46978 * 34.36755 * 6 5 4 36 36 H 1.08998 * 109.46869 * 154.36864 * 6 5 4 37 37 H 0.97005 * 119.99825 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.46454 * 60.00011 * 18 15 5 39 39 H 1.09002 * 109.46878 * 300.00857 * 18 15 5 40 40 H 1.09000 * 109.46870 * 60.00103 * 19 18 15 41 41 H 1.09003 * 109.47377 * 300.00773 * 19 18 15 42 42 H 1.08002 * 119.99736 * 359.97242 * 21 20 19 43 43 H 1.08001 * 120.00071 * 179.97438 * 22 21 20 44 44 H 1.07996 * 120.00361 * 180.02562 * 23 22 21 45 45 H 1.08003 * 119.99842 * 179.72768 * 24 23 22 46 46 H 1.07998 * 120.00269 * 180.27561 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 1.6117 -2.1217 1.2137 6 6 0.3019 -2.5011 1.7492 7 6 0.4154 -2.7382 3.2330 8 1 1.3678 -2.6179 3.7279 9 6 -0.6967 -3.1087 3.9590 10 7 -1.8566 -3.2547 3.3565 11 14 -0.5560 -3.4033 5.7982 12 1 0.8463 -3.1750 6.2302 13 1 -1.4553 -2.4673 6.5197 14 1 -0.9470 -4.8022 6.1068 15 16 2.6083 -3.2760 0.5682 16 8 2.2205 -4.4779 1.2197 17 8 3.9150 -2.7425 0.7324 18 6 2.1591 -3.3308 -1.1885 19 6 3.0208 -4.3737 -1.9030 20 6 2.6481 -4.4188 -3.3624 21 6 3.2978 -3.6002 -4.2673 22 6 2.9563 -3.6419 -5.6061 23 6 1.9655 -4.5025 -6.0403 24 6 1.3123 -5.3174 -5.1346 25 6 1.6568 -5.2789 -3.7965 26 1 -0.3633 -1.0195 -0.1297 27 1 -0.3634 0.3974 0.9477 28 1 -0.3633 0.6220 -0.8181 29 1 1.8933 -0.5139 -0.8898 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6765 1.9564 0.8899 33 1 1.6332 -0.2393 2.1385 34 1 3.1286 -0.6746 1.2767 35 1 -0.4128 -1.6995 1.5629 36 1 -0.0400 -3.4135 1.2605 37 1 -2.6391 -3.5150 3.8673 38 1 2.3267 -2.3516 -1.6370 39 1 1.1074 -3.6001 -1.2864 40 1 2.8529 -5.3528 -1.4543 41 1 4.0726 -4.1049 -1.8050 42 1 4.0722 -2.9280 -3.9282 43 1 3.4636 -3.0020 -6.3130 44 1 1.6990 -4.5353 -7.0863 45 1 0.5351 -5.9866 -5.4731 46 1 1.1495 -5.9187 -3.0896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112703408.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:14 Heat of formation + Delta-G solvation = -83.235369 kcal Electronic energy + Delta-G solvation = -26285.351518 eV Core-core repulsion = 22686.663210 eV Total energy + Delta-G solvation = -3598.688309 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.20004 -38.62305 -38.08084 -36.89958 -35.45149 -35.24771 -33.87090 -31.77078 -30.60563 -29.44837 -27.90769 -26.56484 -25.44384 -24.00752 -23.46588 -22.00833 -21.11454 -19.72676 -18.74606 -18.31509 -17.61316 -17.50774 -17.25528 -16.58049 -16.24391 -15.99208 -15.83205 -15.33084 -14.95357 -14.67972 -14.42306 -14.22505 -14.19410 -14.10417 -13.95519 -13.63454 -13.14618 -13.12993 -13.07810 -13.04370 -12.91031 -12.72309 -12.59843 -12.52827 -12.45476 -12.33953 -12.22909 -11.93251 -11.81976 -11.69088 -11.47061 -11.42597 -11.37051 -10.53374 -9.82153 -9.72327 -9.54469 -8.17094 -6.26451 -0.65749 0.42339 0.50190 1.36967 1.39815 1.51008 1.83132 2.42331 2.81290 3.01272 3.13404 3.24502 3.67418 3.71871 3.78355 3.91050 4.07677 4.10665 4.17603 4.22987 4.29682 4.33676 4.43803 4.45697 4.64110 4.73425 4.79794 4.84366 4.89151 4.98621 5.04181 5.11588 5.12008 5.16410 5.17760 5.25375 5.33380 5.49778 5.56121 5.57385 5.60166 5.63155 5.68654 5.75353 6.00155 6.12163 6.18875 6.81181 7.40846 8.89940 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013269 B = 0.003855 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.626884 B = 7261.583765 C = 8009.987499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.140 4.140 4 C 0.118 3.882 5 N -0.989 5.989 6 C 0.265 3.735 7 C -0.541 4.541 8 H 0.045 0.955 9 C 0.013 3.987 10 N -0.923 5.923 11 Si 0.950 3.050 12 H -0.274 1.274 13 H -0.270 1.270 14 H -0.280 1.280 15 S 2.597 3.403 16 O -0.991 6.991 17 O -0.990 6.990 18 C -0.602 4.602 19 C -0.079 4.079 20 C -0.086 4.086 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.126 4.126 25 C -0.135 4.135 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.014 0.986 37 H 0.266 0.734 38 H 0.156 0.844 39 H 0.138 0.862 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.137 0.863 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.139 0.861 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.509 3.988 -19.420 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 C -0.198 4.198 4 C -0.007 4.007 5 N -0.826 5.826 6 C 0.142 3.858 7 C -0.581 4.581 8 H 0.063 0.937 9 C -0.186 4.186 10 N -0.564 5.564 11 Si 0.776 3.224 12 H -0.198 1.198 13 H -0.195 1.195 14 H -0.206 1.206 15 S 2.695 3.305 16 O -0.982 6.982 17 O -0.980 6.980 18 C -0.733 4.733 19 C -0.118 4.118 20 C -0.087 4.087 21 C -0.144 4.144 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.144 4.144 25 C -0.153 4.153 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.174 0.826 39 H 0.157 0.843 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.155 0.845 43 H 0.164 0.836 44 H 0.162 0.838 45 H 0.156 0.844 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.964 3.464 -18.839 20.745 hybrid contribution -0.760 -0.310 0.961 1.264 sum 7.204 3.154 -17.878 19.531 Atomic orbital electron populations 1.21890 0.95251 1.01529 1.01430 1.21644 0.96457 0.97678 0.97565 1.21758 1.01423 0.94028 1.02623 1.21511 0.99689 0.80268 0.99273 1.57230 1.31934 1.19370 1.74058 1.18823 0.79555 0.95362 0.92072 1.21877 0.94819 1.46055 0.95317 0.93650 1.25645 0.95023 0.95156 1.02768 1.69999 1.00204 1.48765 1.37403 0.85629 0.78158 0.78009 0.80639 1.19838 1.19526 1.20606 1.05086 0.73537 0.73328 0.78571 1.93565 1.83298 1.48115 1.73192 1.93471 1.38585 1.79287 1.86694 1.30589 1.11251 1.09645 1.21853 1.20413 0.99825 0.98236 0.93282 1.19651 0.97447 0.97642 0.93944 1.21345 1.00412 0.99030 0.93652 1.21476 0.97758 0.99098 0.95708 1.21520 0.96308 0.96038 1.00724 1.21435 1.00273 0.99790 0.92916 1.21330 0.97580 0.99388 0.97000 0.93520 0.93855 0.91360 0.90441 0.91732 0.90943 0.92638 0.91087 0.89714 0.93369 0.96822 0.92540 0.82637 0.84335 0.89716 0.88352 0.84507 0.83641 0.83775 0.84358 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 7.77 71.98 0.56 -3.54 16 2 C -0.11 -2.95 3.14 -10.79 -0.03 -2.99 16 3 C -0.14 -2.88 9.19 71.98 0.66 -2.21 16 4 C 0.12 4.01 5.19 86.38 0.45 4.46 16 5 N -0.99 -40.14 2.56 -519.84 -1.33 -41.47 16 6 C 0.27 13.21 4.19 85.63 0.36 13.57 16 7 C -0.54 -31.05 9.39 25.60 0.24 -30.81 16 8 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 9 C 0.01 0.75 5.46 84.66 0.46 1.21 16 10 N -0.92 -54.20 13.29 21.45 0.28 -53.91 16 11 Si 0.95 45.55 29.54 68.60 2.03 47.58 16 12 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 15 S 2.60 99.03 5.37 -56.49 -0.30 98.72 16 16 O -0.99 -47.88 17.00 -127.65 -2.17 -50.05 16 17 O -0.99 -39.42 16.54 -127.65 -2.11 -41.53 16 18 C -0.60 -15.90 6.16 71.98 0.44 -15.45 16 19 C -0.08 -1.89 5.35 29.84 0.16 -1.73 16 20 C -0.09 -1.89 5.13 -19.87 -0.10 -1.99 16 21 C -0.13 -2.37 9.70 22.27 0.22 -2.16 16 22 C -0.12 -1.95 10.05 22.27 0.22 -1.73 16 23 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 24 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 25 C -0.13 -2.93 9.70 22.27 0.22 -2.71 16 26 H 0.05 1.50 6.26 -2.38 -0.01 1.48 16 27 H 0.04 1.37 7.96 -2.39 -0.02 1.35 16 28 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.08 1.74 6.75 -2.39 -0.02 1.73 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 2.60 8.10 -2.39 -0.02 2.58 16 34 H 0.08 2.75 6.85 -2.39 -0.02 2.73 16 35 H 0.05 2.38 5.47 -2.39 -0.01 2.37 16 36 H 0.01 0.74 7.63 -2.39 -0.02 0.72 16 37 H 0.27 14.68 8.31 -92.70 -0.77 13.90 16 38 H 0.16 3.26 6.75 -2.39 -0.02 3.24 16 39 H 0.14 3.62 8.14 -2.39 -0.02 3.60 16 40 H 0.08 2.07 8.09 -2.39 -0.02 2.05 16 41 H 0.10 2.08 8.09 -2.39 -0.02 2.06 16 42 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 43 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 44 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 45 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 46 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -73.56 385.18 1.64 -71.92 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.94 Total: 18.70 kcal Atomic # 6 Polarization: -54.25 SS G_CDS: 4.30 Total: -49.95 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -1.05 Total: -95.38 kcal Atomic # 8 Polarization: -87.30 SS G_CDS: -4.28 Total: -91.58 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 16 Polarization: 99.03 SS G_CDS: -0.30 Total: 98.72 kcal Total: -73.56 1.64 -71.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112703408.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.318 kcal (2) G-P(sol) polarization free energy of solvation -73.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds