Wall clock time and date at job start Tue Mar 31 2020 15:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47495 * 2 1 4 4 C 1.53003 * 109.46886 * 120.00070 * 2 1 3 5 5 H 1.09008 * 109.46905 * 299.99822 * 4 2 1 6 6 C 1.50701 * 109.47385 * 59.99593 * 4 2 1 7 7 C 1.38233 * 120.00362 * 230.26621 * 6 4 2 8 8 C 1.38229 * 120.00156 * 179.80939 * 7 6 4 9 9 C 1.38239 * 119.99873 * 0.40022 * 8 7 6 10 10 C 1.38231 * 119.99785 * 359.84839 * 9 8 7 11 11 C 1.38231 * 120.00557 * 359.96253 * 10 9 8 12 12 N 1.46497 * 109.47196 * 179.97438 * 4 2 1 13 13 C 1.46498 * 119.99992 * 305.26578 * 12 4 2 14 14 S 1.65603 * 120.00136 * 125.54279 * 12 4 2 15 15 O 1.42104 * 104.27853 * 206.07461 * 14 12 4 16 16 O 1.42105 * 104.27631 * 333.92317 * 14 12 4 17 17 C 1.81398 * 104.45169 * 89.99616 * 14 12 4 18 18 C 1.52995 * 109.47071 * 179.97438 * 17 14 12 19 19 C 1.50700 * 109.47376 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99359 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00581 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00414 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99843 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47084 * 89.99790 * 23 21 19 25 25 H 1.48492 * 109.47179 * 210.00162 * 23 21 19 26 26 H 1.48503 * 109.46856 * 329.99879 * 23 21 19 27 27 H 1.08999 * 109.47228 * 300.00132 * 1 2 3 28 28 H 1.09003 * 109.46417 * 59.99732 * 1 2 3 29 29 H 1.08997 * 109.47276 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47263 * 239.99335 * 2 1 3 31 31 H 1.08999 * 109.47651 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46961 * 300.00056 * 3 2 1 33 33 H 1.09008 * 109.47132 * 59.99666 * 3 2 1 34 34 H 1.08007 * 119.99737 * 359.97438 * 7 6 4 35 35 H 1.07998 * 120.00278 * 180.22433 * 8 7 6 36 36 H 1.08004 * 119.99963 * 179.83497 * 9 8 7 37 37 H 1.08007 * 119.99562 * 179.97438 * 10 9 8 38 38 H 1.07999 * 120.00564 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.47412 * 84.53242 * 13 12 4 40 40 H 1.09000 * 109.47152 * 204.53233 * 13 12 4 41 41 H 1.08999 * 109.46946 * 324.53399 * 13 12 4 42 42 H 1.08996 * 109.47333 * 300.00282 * 17 14 12 43 43 H 1.09004 * 109.46603 * 60.00123 * 17 14 12 44 44 H 1.09005 * 109.47569 * 300.00233 * 18 17 14 45 45 H 1.09004 * 109.47239 * 60.00595 * 18 17 14 46 46 H 0.96999 * 120.00247 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5375 -2.1421 1.2494 7 6 0.9162 -2.6555 2.3724 8 6 0.4518 -3.9575 2.3710 9 6 0.6162 -4.7487 1.2495 10 6 1.2422 -4.2369 0.1283 11 6 1.7031 -2.9337 0.1282 12 7 3.5049 -0.7219 1.2490 13 6 4.2370 -1.2532 0.0967 14 16 4.3334 -0.1283 2.5543 15 8 5.5800 0.2918 2.0167 16 8 3.4379 0.8049 3.1429 17 6 4.5593 -1.5648 3.6386 18 6 5.3223 -1.1405 4.8950 19 6 5.5105 -2.3340 5.7956 20 1 5.1249 -3.2988 5.5010 21 6 6.1750 -2.1944 6.9955 22 7 6.3397 -3.2361 7.7812 23 14 6.8414 -0.5254 7.5054 24 1 5.8057 0.2062 8.2781 25 1 8.0492 -0.7113 8.3490 26 1 7.1992 0.2558 6.2941 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7911 -2.0384 3.2500 35 1 -0.0369 -4.3574 3.2471 36 1 0.2558 -5.7669 1.2493 37 1 1.3710 -4.8553 -0.7478 38 1 2.1925 -2.5340 -0.7476 39 1 4.3341 -0.4763 -0.6618 40 1 5.2283 -1.5771 0.4138 41 1 3.6934 -2.1013 -0.3195 42 1 3.5850 -1.9630 3.9219 43 1 5.1262 -2.3322 3.1115 44 1 6.2967 -0.7425 4.6114 45 1 4.7558 -0.3729 5.4223 46 1 6.8069 -3.1377 8.6256 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112706323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:34 Heat of formation + Delta-G solvation = -53.378467 kcal Electronic energy + Delta-G solvation = -26939.785177 eV Core-core repulsion = 23342.391561 eV Total energy + Delta-G solvation = -3597.393616 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.03511 -37.35551 -36.76287 -35.55690 -33.93873 -33.81997 -31.49470 -31.29235 -30.95530 -27.47573 -27.09352 -25.98470 -24.75914 -22.72817 -21.77938 -21.16530 -19.86707 -18.64029 -17.72434 -17.06706 -16.92336 -16.31839 -15.72939 -15.31354 -14.96726 -14.92790 -14.47865 -14.30067 -14.14774 -13.67540 -13.58592 -13.02754 -12.92793 -12.77779 -12.65981 -12.47468 -12.32434 -12.21546 -12.00472 -11.89447 -11.71686 -11.52022 -11.34982 -11.24819 -11.18289 -11.12918 -11.09552 -10.85243 -10.63266 -10.44114 -10.14583 -9.71604 -9.41232 -8.97913 -8.84097 -8.81851 -8.65949 -6.16095 -4.17163 0.61566 1.26261 1.33705 2.91288 3.26351 3.33717 3.38081 3.74144 4.17559 4.36051 4.37387 4.51794 4.61718 4.80804 4.87201 4.92057 4.94917 5.02345 5.15086 5.16125 5.33999 5.42132 5.47026 5.48914 5.53865 5.55756 5.57994 5.66263 5.75070 5.77766 5.81360 5.87243 5.95269 5.97862 6.03136 6.19538 6.28013 6.29652 6.39057 6.45974 6.55628 6.61841 6.82312 6.92138 6.94356 7.55215 8.37573 8.85421 9.43680 10.96339 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.004552 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.046461 B = 6150.084627 C = 7410.582076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.150 4.150 4 C 0.189 3.811 5 H 0.110 0.890 6 C -0.092 4.092 7 C -0.109 4.109 8 C -0.114 4.114 9 C -0.120 4.120 10 C -0.123 4.123 11 C -0.109 4.109 12 N -0.996 5.996 13 C 0.083 3.917 14 S 2.583 3.417 15 O -0.962 6.962 16 O -0.962 6.962 17 C -0.582 4.582 18 C -0.006 4.006 19 C -0.518 4.518 20 H 0.078 0.922 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.868 3.132 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.262 1.262 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.031 0.969 45 H 0.027 0.973 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.966 1.437 -18.652 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.207 4.207 4 C 0.083 3.917 5 H 0.128 0.872 6 C -0.093 4.093 7 C -0.128 4.128 8 C -0.132 4.132 9 C -0.138 4.138 10 C -0.141 4.141 11 C -0.128 4.128 12 N -0.830 5.830 13 C -0.062 4.062 14 S 2.682 3.318 15 O -0.952 6.952 16 O -0.952 6.952 17 C -0.715 4.715 18 C -0.045 4.045 19 C -0.557 4.557 20 H 0.096 0.904 21 C -0.130 4.130 22 N -0.534 5.534 23 Si 0.694 3.306 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.186 1.186 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.049 0.951 45 H 0.045 0.955 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.585 2.323 -18.417 22.427 hybrid contribution 0.348 -0.133 0.555 0.668 sum -12.237 2.191 -17.863 21.763 Atomic orbital electron populations 1.21825 0.94444 1.02142 1.01996 1.21350 0.96005 0.96592 0.97392 1.21850 1.01518 0.95335 1.02022 1.19916 0.79087 0.91790 1.00907 0.87176 1.20143 0.98722 0.96145 0.94336 1.21186 0.97993 0.95938 0.97668 1.21170 0.99735 0.94036 0.98308 1.21163 0.99383 0.99671 0.93580 1.21123 0.98939 0.95613 0.98390 1.21097 0.99519 0.94043 0.98093 1.57681 1.13509 1.79485 1.32365 1.21631 0.96330 0.99346 0.88914 1.05887 0.73734 0.77705 0.74432 1.93548 1.43802 1.80702 1.77181 1.93531 1.64679 1.59329 1.77688 1.30338 1.10403 1.18050 1.12722 1.19403 0.94953 0.99136 0.91046 1.20841 1.37436 0.94897 1.02493 0.90428 1.24973 0.95242 0.96688 0.96122 1.69879 1.42110 1.29692 1.11691 0.86947 0.79325 0.84841 0.79492 1.19639 1.20711 1.18648 0.92338 0.92530 0.92231 0.90658 0.92505 0.92659 0.91947 0.85669 0.85885 0.86277 0.86268 0.85680 0.92521 0.90690 0.90689 0.85766 0.85774 0.95077 0.95479 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.95 37.16 0.33 -0.94 16 2 C -0.09 -0.92 1.99 -90.62 -0.18 -1.10 16 3 C -0.15 -1.62 9.04 37.16 0.34 -1.29 16 4 C 0.19 2.24 1.90 -69.08 -0.13 2.11 16 5 H 0.11 1.42 6.56 -51.92 -0.34 1.08 16 6 C -0.09 -1.02 3.77 -104.62 -0.39 -1.42 16 7 C -0.11 -1.27 9.67 -39.59 -0.38 -1.65 16 8 C -0.11 -1.23 10.05 -39.58 -0.40 -1.63 16 9 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 10 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 11 C -0.11 -1.07 7.58 -39.58 -0.30 -1.37 16 12 N -1.00 -13.18 2.23 -115.85 -0.26 -13.44 16 13 C 0.08 0.90 9.11 59.85 0.55 1.45 16 14 S 2.58 45.31 5.36 -107.50 -0.58 44.74 16 15 O -0.96 -19.18 16.98 -57.54 -0.98 -20.16 16 16 O -0.96 -18.60 16.52 -57.54 -0.95 -19.55 16 17 C -0.58 -11.09 6.12 37.15 0.23 -10.86 16 18 C -0.01 -0.15 4.05 -27.89 -0.11 -0.26 16 19 C -0.52 -14.59 9.66 -34.44 -0.33 -14.93 16 20 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 22 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 23 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.52 7.09 -51.93 -0.37 0.15 16 30 H 0.08 0.66 6.33 -51.93 -0.33 0.33 16 31 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.13 1.40 7.97 -52.48 -0.42 0.98 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 37 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 38 H 0.13 1.02 5.15 -52.49 -0.27 0.75 16 39 H 0.06 0.55 7.99 -51.93 -0.41 0.14 16 40 H 0.07 0.84 7.59 -51.93 -0.39 0.44 16 41 H 0.07 0.66 4.35 -51.93 -0.23 0.43 16 42 H 0.12 2.20 8.14 -51.93 -0.42 1.77 16 43 H 0.12 2.20 8.14 -51.92 -0.42 1.77 16 44 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 45 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 46 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -33.78 375.30 -9.99 -43.77 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.31 Total: 1.45 kcal Atomic # 6 Polarization: -31.33 SS G_CDS: -1.68 Total: -33.01 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.52 Total: -39.84 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -1.93 Total: -39.71 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Atomic # 16 Polarization: 45.31 SS G_CDS: -0.58 Total: 44.74 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.78 -9.99 -43.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112706323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.604 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds