Wall clock time and date at job start Tue Mar 31 2020 15:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47495 * 2 1 4 4 C 1.53003 * 109.46886 * 120.00070 * 2 1 3 5 5 H 1.09008 * 109.46905 * 299.99822 * 4 2 1 6 6 C 1.50701 * 109.47385 * 59.99593 * 4 2 1 7 7 C 1.38233 * 120.00362 * 230.26621 * 6 4 2 8 8 C 1.38229 * 120.00156 * 179.80939 * 7 6 4 9 9 C 1.38239 * 119.99873 * 0.40022 * 8 7 6 10 10 C 1.38231 * 119.99785 * 359.84839 * 9 8 7 11 11 C 1.38231 * 120.00557 * 359.96253 * 10 9 8 12 12 N 1.46497 * 109.47196 * 179.97438 * 4 2 1 13 13 C 1.46498 * 119.99992 * 305.26578 * 12 4 2 14 14 S 1.65603 * 120.00136 * 125.54279 * 12 4 2 15 15 O 1.42104 * 104.27853 * 206.07461 * 14 12 4 16 16 O 1.42105 * 104.27631 * 333.92317 * 14 12 4 17 17 C 1.81398 * 104.45169 * 89.99616 * 14 12 4 18 18 C 1.52995 * 109.47071 * 179.97438 * 17 14 12 19 19 C 1.50700 * 109.47376 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99359 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00581 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00414 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99843 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47084 * 89.99790 * 23 21 19 25 25 H 1.48492 * 109.47179 * 210.00162 * 23 21 19 26 26 H 1.48503 * 109.46856 * 329.99879 * 23 21 19 27 27 H 1.08999 * 109.47228 * 300.00132 * 1 2 3 28 28 H 1.09003 * 109.46417 * 59.99732 * 1 2 3 29 29 H 1.08997 * 109.47276 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47263 * 239.99335 * 2 1 3 31 31 H 1.08999 * 109.47651 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46961 * 300.00056 * 3 2 1 33 33 H 1.09008 * 109.47132 * 59.99666 * 3 2 1 34 34 H 1.08007 * 119.99737 * 359.97438 * 7 6 4 35 35 H 1.07998 * 120.00278 * 180.22433 * 8 7 6 36 36 H 1.08004 * 119.99963 * 179.83497 * 9 8 7 37 37 H 1.08007 * 119.99562 * 179.97438 * 10 9 8 38 38 H 1.07999 * 120.00564 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.47412 * 84.53242 * 13 12 4 40 40 H 1.09000 * 109.47152 * 204.53233 * 13 12 4 41 41 H 1.08999 * 109.46946 * 324.53399 * 13 12 4 42 42 H 1.08996 * 109.47333 * 300.00282 * 17 14 12 43 43 H 1.09004 * 109.46603 * 60.00123 * 17 14 12 44 44 H 1.09005 * 109.47569 * 300.00233 * 18 17 14 45 45 H 1.09004 * 109.47239 * 60.00595 * 18 17 14 46 46 H 0.96999 * 120.00247 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5375 -2.1421 1.2494 7 6 0.9162 -2.6555 2.3724 8 6 0.4518 -3.9575 2.3710 9 6 0.6162 -4.7487 1.2495 10 6 1.2422 -4.2369 0.1283 11 6 1.7031 -2.9337 0.1282 12 7 3.5049 -0.7219 1.2490 13 6 4.2370 -1.2532 0.0967 14 16 4.3334 -0.1283 2.5543 15 8 5.5800 0.2918 2.0167 16 8 3.4379 0.8049 3.1429 17 6 4.5593 -1.5648 3.6386 18 6 5.3223 -1.1405 4.8950 19 6 5.5105 -2.3340 5.7956 20 1 5.1249 -3.2988 5.5010 21 6 6.1750 -2.1944 6.9955 22 7 6.3397 -3.2361 7.7812 23 14 6.8414 -0.5254 7.5054 24 1 5.8057 0.2062 8.2781 25 1 8.0492 -0.7113 8.3490 26 1 7.1992 0.2558 6.2941 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7911 -2.0384 3.2500 35 1 -0.0369 -4.3574 3.2471 36 1 0.2558 -5.7669 1.2493 37 1 1.3710 -4.8553 -0.7478 38 1 2.1925 -2.5340 -0.7476 39 1 4.3341 -0.4763 -0.6618 40 1 5.2283 -1.5771 0.4138 41 1 3.6934 -2.1013 -0.3195 42 1 3.5850 -1.9630 3.9219 43 1 5.1262 -2.3322 3.1115 44 1 6.2967 -0.7425 4.6114 45 1 4.7558 -0.3729 5.4223 46 1 6.8069 -3.1377 8.6256 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112706323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:33 Heat of formation + Delta-G solvation = -74.146328 kcal Electronic energy + Delta-G solvation = -26940.685739 eV Core-core repulsion = 23342.391561 eV Total energy + Delta-G solvation = -3598.294178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.86875 -38.32545 -38.14804 -37.05671 -35.92924 -34.73227 -33.50841 -32.11581 -31.74089 -28.35379 -27.97792 -27.80535 -25.73833 -23.51232 -23.13702 -22.51879 -20.78935 -19.92347 -19.38628 -18.57243 -17.87786 -17.48928 -17.15300 -16.44172 -16.28244 -16.07674 -15.80139 -15.34466 -15.31117 -14.94825 -14.85133 -14.39346 -13.90993 -13.86314 -13.79158 -13.52267 -13.44279 -13.29284 -13.24495 -13.11798 -13.09117 -12.99619 -12.92207 -12.71455 -12.28647 -12.16387 -12.00396 -11.96408 -11.88025 -11.79007 -11.67420 -11.44390 -11.24963 -10.86800 -9.93722 -9.73802 -9.64111 -8.38779 -6.44833 -0.79511 0.44179 0.55224 1.29705 1.31316 1.41686 1.68003 2.27307 2.74172 2.93231 2.94777 3.10857 3.54192 3.78103 3.79993 3.96157 4.01321 4.06128 4.17856 4.18999 4.29639 4.38539 4.49444 4.50929 4.66555 4.69795 4.70197 4.83861 4.85142 4.90407 4.98067 5.01496 5.03832 5.05201 5.08806 5.17320 5.21940 5.24774 5.42601 5.44013 5.47991 5.60068 5.64611 5.68657 5.74835 6.14505 6.15745 6.60487 7.19540 8.76933 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.004552 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.046461 B = 6150.084627 C = 7410.582076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.152 4.152 4 C 0.185 3.815 5 H 0.093 0.907 6 C -0.098 4.098 7 C -0.131 4.131 8 C -0.130 4.130 9 C -0.125 4.125 10 C -0.122 4.122 11 C -0.110 4.110 12 N -0.985 5.985 13 C 0.071 3.929 14 S 2.609 3.391 15 O -0.984 6.984 16 O -0.982 6.982 17 C -0.590 4.590 18 C -0.014 4.014 19 C -0.527 4.527 20 H 0.047 0.953 21 C 0.016 3.984 22 N -0.939 5.939 23 Si 0.923 3.077 24 H -0.259 1.259 25 H -0.271 1.271 26 H -0.251 1.251 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.117 0.883 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.031 0.969 45 H 0.030 0.970 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.518 1.920 -21.231 25.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 C -0.210 4.210 4 C 0.079 3.921 5 H 0.111 0.889 6 C -0.100 4.100 7 C -0.150 4.150 8 C -0.148 4.148 9 C -0.143 4.143 10 C -0.140 4.140 11 C -0.128 4.128 12 N -0.822 5.822 13 C -0.073 4.073 14 S 2.706 3.294 15 O -0.974 6.974 16 O -0.972 6.972 17 C -0.721 4.721 18 C -0.053 4.053 19 C -0.566 4.566 20 H 0.065 0.935 21 C -0.182 4.182 22 N -0.578 5.578 23 Si 0.746 3.254 24 H -0.184 1.184 25 H -0.196 1.196 26 H -0.175 1.175 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.135 0.865 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.149 0.851 43 H 0.152 0.848 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.132 2.796 -20.983 24.911 hybrid contribution 0.426 -0.390 1.274 1.399 sum -12.706 2.406 -19.709 23.573 Atomic orbital electron populations 1.21794 0.93426 1.02346 1.02429 1.21358 0.96723 0.95807 0.96881 1.21880 1.00648 0.96129 1.02307 1.20072 0.77836 0.92669 1.01486 0.88891 1.20078 0.99278 0.95821 0.94849 1.21291 0.99219 0.96536 0.97968 1.21357 1.00151 0.93999 0.99249 1.21471 0.99056 1.00460 0.93345 1.21470 0.97846 0.95693 0.98996 1.21336 0.99209 0.94112 0.98097 1.57362 1.14168 1.79401 1.31283 1.21950 0.96307 1.00844 0.88173 1.04891 0.73200 0.76764 0.74524 1.93513 1.45404 1.80936 1.77552 1.93501 1.65045 1.59913 1.78722 1.30365 1.10217 1.19956 1.11547 1.19346 0.95767 0.97545 0.92621 1.21126 1.36861 0.95224 1.03397 0.93516 1.25848 0.95654 1.00510 0.96233 1.70003 1.43408 1.31990 1.12429 0.86050 0.79287 0.80360 0.79734 1.18382 1.19597 1.17467 0.93169 0.90866 0.92123 0.88622 0.93821 0.90530 0.93585 0.86534 0.85389 0.84433 0.83624 0.83535 0.90856 0.91046 0.88128 0.85085 0.84811 0.95119 0.95222 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.95 71.98 0.64 -1.52 16 2 C -0.09 -1.53 1.99 -10.79 -0.02 -1.55 16 3 C -0.15 -3.03 9.04 71.98 0.65 -2.38 16 4 C 0.18 4.16 1.90 44.25 0.08 4.24 16 5 H 0.09 2.42 6.56 -2.38 -0.02 2.40 16 6 C -0.10 -2.06 3.77 -19.86 -0.07 -2.13 16 7 C -0.13 -3.05 9.67 22.27 0.22 -2.83 16 8 C -0.13 -2.73 10.05 22.27 0.22 -2.50 16 9 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 10 C -0.12 -1.91 10.05 22.27 0.22 -1.69 16 11 C -0.11 -1.82 7.58 22.27 0.17 -1.65 16 12 N -0.98 -24.71 2.23 -520.44 -1.16 -25.87 16 13 C 0.07 1.36 9.11 127.77 1.16 2.53 16 14 S 2.61 90.39 5.36 -56.49 -0.30 90.09 16 15 O -0.98 -38.46 16.98 -127.65 -2.17 -40.62 16 16 O -0.98 -37.99 16.52 -127.65 -2.11 -40.10 16 17 C -0.59 -22.65 6.12 71.98 0.44 -22.21 16 18 C -0.01 -0.67 4.05 29.85 0.12 -0.55 16 19 C -0.53 -30.50 9.66 25.60 0.25 -30.25 16 20 H 0.05 2.90 7.99 -2.91 -0.02 2.88 16 21 C 0.02 0.96 5.47 84.65 0.46 1.42 16 22 N -0.94 -58.25 13.96 21.44 0.30 -57.95 16 23 Si 0.92 44.38 27.47 68.60 1.88 46.27 16 24 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.25 -11.52 6.54 99.48 0.65 -10.87 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.92 7.09 -2.39 -0.02 0.90 16 30 H 0.10 1.30 6.33 -2.39 -0.02 1.28 16 31 H 0.04 0.97 7.45 -2.39 -0.02 0.95 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.12 2.76 7.97 -2.91 -0.02 2.74 16 35 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.15 1.73 5.15 -2.91 -0.01 1.72 16 39 H 0.07 1.20 7.99 -2.39 -0.02 1.18 16 40 H 0.07 1.45 7.59 -2.39 -0.02 1.43 16 41 H 0.10 1.40 4.35 -2.39 -0.01 1.39 16 42 H 0.13 4.75 8.14 -2.39 -0.02 4.73 16 43 H 0.13 4.76 8.14 -2.39 -0.02 4.74 16 44 H 0.03 1.48 7.20 -2.38 -0.02 1.46 16 45 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 46 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -73.61 375.30 2.11 -71.49 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.90 Total: 19.75 kcal Atomic # 6 Polarization: -67.82 SS G_CDS: 4.77 Total: -63.05 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -0.86 Total: -83.82 kcal Atomic # 8 Polarization: -76.45 SS G_CDS: -4.28 Total: -80.72 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.27 kcal Atomic # 16 Polarization: 90.39 SS G_CDS: -0.30 Total: 90.09 kcal Total: -73.61 2.11 -71.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112706323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.654 kcal (2) G-P(sol) polarization free energy of solvation -73.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds