Wall clock time and date at job start Tue Mar 31 2020 15:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47337 * 2 1 4 4 C 1.53003 * 109.47138 * 119.99963 * 2 1 3 5 5 H 1.09006 * 109.47129 * 174.00111 * 4 2 1 6 6 C 1.50695 * 109.47340 * 54.00175 * 4 2 1 7 7 C 1.38238 * 120.00058 * 270.59216 * 6 4 2 8 8 C 1.38234 * 120.00083 * 179.78615 * 7 6 4 9 9 C 1.38240 * 119.99654 * 0.43898 * 8 7 6 10 10 C 1.38230 * 120.00298 * 359.81315 * 9 8 7 11 11 C 1.38237 * 120.00143 * 359.97438 * 10 9 8 12 12 N 1.46501 * 109.46877 * 294.00195 * 4 2 1 13 13 C 1.46493 * 120.00182 * 19.57443 * 12 4 2 14 14 S 1.65603 * 119.99637 * 199.57520 * 12 4 2 15 15 O 1.42100 * 104.27891 * 26.07475 * 14 12 4 16 16 O 1.42099 * 104.27740 * 153.92892 * 14 12 4 17 17 C 1.81396 * 104.45056 * 270.00094 * 14 12 4 18 18 C 1.53000 * 109.46975 * 180.02562 * 17 14 12 19 19 C 1.50713 * 109.46843 * 179.97438 * 18 17 14 20 20 H 1.07997 * 119.99868 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99725 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00139 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99807 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47100 * 89.99803 * 23 21 19 25 25 H 1.48500 * 109.47510 * 209.99929 * 23 21 19 26 26 H 1.48503 * 109.47160 * 330.00125 * 23 21 19 27 27 H 1.09000 * 109.47204 * 321.72946 * 1 2 3 28 28 H 1.09000 * 109.46921 * 81.73172 * 1 2 3 29 29 H 1.09002 * 109.47038 * 201.72646 * 1 2 3 30 30 H 1.08997 * 109.47642 * 239.99710 * 2 1 3 31 31 H 1.09000 * 109.46767 * 322.76151 * 3 2 1 32 32 H 1.08997 * 109.46961 * 82.76128 * 3 2 1 33 33 H 1.08994 * 109.47335 * 202.76333 * 3 2 1 34 34 H 1.08002 * 119.99990 * 359.97438 * 7 6 4 35 35 H 1.07996 * 120.00157 * 180.27190 * 8 7 6 36 36 H 1.07999 * 119.99533 * 179.83369 * 9 8 7 37 37 H 1.08001 * 120.00078 * 180.02562 * 10 9 8 38 38 H 1.07994 * 120.00412 * 179.97438 * 11 10 9 39 39 H 1.09004 * 109.46907 * 84.14382 * 13 12 4 40 40 H 1.08996 * 109.46919 * 324.14239 * 13 12 4 41 41 H 1.09002 * 109.47166 * 204.13876 * 13 12 4 42 42 H 1.08998 * 109.47342 * 300.00128 * 17 14 12 43 43 H 1.08997 * 109.47241 * 60.00404 * 17 14 12 44 44 H 1.09000 * 109.47384 * 299.99730 * 18 17 14 45 45 H 1.08994 * 109.47432 * 60.00248 * 18 17 14 46 46 H 0.96999 * 119.99866 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1247 -0.8152 1.1972 6 6 1.4201 -2.0927 1.3258 7 6 0.2165 -2.2716 1.9818 8 6 -0.3543 -3.5288 2.0482 9 6 0.2831 -4.6088 1.4664 10 6 1.4892 -4.4309 0.8149 11 6 2.0578 -3.1728 0.7447 12 7 1.6730 0.0477 2.4410 13 6 0.5950 1.0372 2.3711 14 16 2.4769 -0.2017 3.8672 15 8 3.7530 -0.6849 3.4704 16 8 2.3441 1.0295 4.5642 17 6 1.5314 -1.5083 4.6973 18 6 2.1821 -1.8318 6.0437 19 6 1.3961 -2.9170 6.7337 20 1 0.5204 -3.3344 6.2591 21 6 1.7957 -3.3775 7.9703 22 7 2.8624 -2.8695 8.5480 23 14 0.8212 -4.7220 8.8258 24 1 1.3593 -6.0494 8.4335 25 1 0.9357 -4.5567 10.2971 26 1 -0.6062 -4.6290 8.4268 27 1 -0.3633 0.8068 0.6365 28 1 -0.3633 0.1478 -1.0170 29 1 -0.3633 -0.9547 0.3804 30 1 1.8933 -0.5138 -0.8899 31 1 1.3897 2.0578 -0.6219 32 1 2.0390 1.8282 1.0195 33 1 3.0545 1.4692 -0.3976 34 1 -0.2794 -1.4285 2.4398 35 1 -1.2967 -3.6678 2.5569 36 1 -0.1616 -5.5915 1.5206 37 1 1.9869 -5.2746 0.3601 38 1 3.0003 -3.0338 0.2361 39 1 -0.3648 0.5391 2.5087 40 1 0.6140 1.5270 1.3976 41 1 0.7336 1.7816 3.1552 42 1 0.5086 -1.1689 4.8607 43 1 1.5222 -2.4023 4.0738 44 1 3.2050 -2.1712 5.8808 45 1 2.1909 -0.9378 6.6672 46 1 3.1437 -3.1938 9.4178 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112706324.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:38 Heat of formation + Delta-G solvation = -22.877179 kcal Electronic energy + Delta-G solvation = -27432.833822 eV Core-core repulsion = 23836.762841 eV Total energy + Delta-G solvation = -3596.070981 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25317 -37.79109 -36.61434 -35.40536 -33.85433 -32.99512 -31.66187 -31.21178 -30.73260 -28.08819 -27.01996 -25.58138 -24.18332 -22.50427 -21.74199 -21.47571 -20.24440 -18.40034 -17.68476 -17.02652 -16.44760 -15.88309 -15.61250 -15.13606 -15.02176 -14.80926 -14.60953 -14.49377 -14.07876 -13.61643 -13.49916 -13.21460 -13.01268 -12.57519 -12.42714 -12.33438 -12.15250 -11.88722 -11.77283 -11.69383 -11.56524 -11.52216 -11.35013 -11.05949 -11.01228 -10.93647 -10.81756 -10.76194 -10.38650 -10.33824 -10.06791 -9.73142 -9.30325 -8.82084 -8.75414 -8.57377 -8.47009 -6.09367 -4.14189 0.80272 1.37849 1.47975 3.04122 3.27245 3.33312 3.35945 3.82908 4.30180 4.40664 4.54493 4.59832 4.67506 4.85188 4.97085 5.00379 5.07322 5.13252 5.18020 5.25917 5.34873 5.48296 5.50824 5.55663 5.61250 5.63948 5.69793 5.72219 5.78526 5.83575 5.89863 5.94770 6.04548 6.06060 6.16849 6.20261 6.22877 6.52776 6.56027 6.59775 6.60839 6.80753 7.05841 7.33944 7.40258 7.83998 8.21680 8.88980 9.50046 11.01870 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.004957 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.723301 B = 5646.948480 C = 6923.051529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.086 4.086 3 C -0.166 4.166 4 C 0.194 3.806 5 H 0.103 0.897 6 C -0.109 4.109 7 C -0.104 4.104 8 C -0.118 4.118 9 C -0.117 4.117 10 C -0.120 4.120 11 C -0.106 4.106 12 N -0.999 5.999 13 C 0.049 3.951 14 S 2.587 3.413 15 O -0.963 6.963 16 O -0.966 6.966 17 C -0.588 4.588 18 C 0.030 3.970 19 C -0.515 4.515 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.891 5.891 23 Si 0.898 3.102 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.051 0.949 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.122 0.878 44 H 0.031 0.969 45 H 0.031 0.969 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.421 3.616 -19.957 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.106 4.106 3 C -0.223 4.223 4 C 0.088 3.912 5 H 0.121 0.879 6 C -0.111 4.111 7 C -0.122 4.122 8 C -0.136 4.136 9 C -0.135 4.135 10 C -0.138 4.138 11 C -0.125 4.125 12 N -0.834 5.834 13 C -0.096 4.096 14 S 2.687 3.313 15 O -0.954 6.954 16 O -0.956 6.956 17 C -0.721 4.721 18 C -0.009 4.009 19 C -0.554 4.554 20 H 0.079 0.921 21 C -0.144 4.144 22 N -0.530 5.530 23 Si 0.725 3.275 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.070 0.930 40 H 0.123 0.877 41 H 0.101 0.899 42 H 0.135 0.865 43 H 0.141 0.859 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.524 4.151 -19.553 20.738 hybrid contribution -1.044 -1.398 0.594 1.843 sum -6.569 2.753 -18.960 20.253 Atomic orbital electron populations 1.22733 0.94850 1.04238 1.01996 1.21187 0.96668 0.96354 0.96387 1.22225 1.01093 0.95587 1.03411 1.19820 0.99534 0.86579 0.85282 0.87906 1.20347 0.95850 0.95433 0.99466 1.21099 0.95140 0.97517 0.98475 1.21167 1.00326 0.92796 0.99299 1.21159 0.95674 0.98777 0.97902 1.21094 0.95899 0.96992 0.99822 1.20960 0.99578 0.92256 0.99666 1.57660 1.50645 1.49980 1.25123 1.22553 0.89135 0.92359 1.05508 1.05762 0.75518 0.76730 0.73308 1.93516 1.38111 1.82850 1.80882 1.93519 1.86963 1.42198 1.72943 1.30549 1.13323 1.16046 1.12199 1.18939 0.96393 0.98696 0.86844 1.20981 1.11912 1.19764 1.02771 0.92098 1.25052 0.95197 0.96925 0.97271 1.69956 1.24177 1.42349 1.16496 0.86498 0.80282 0.81943 0.78729 1.20503 1.21032 1.19787 0.90377 0.93208 0.91005 0.90050 0.92278 0.90283 0.92587 0.85612 0.86022 0.86275 0.86143 0.85927 0.93018 0.87706 0.89862 0.86468 0.85945 0.95059 0.95057 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 8.09 37.15 0.30 -1.24 16 2 C -0.09 -0.81 2.79 -90.62 -0.25 -1.06 16 3 C -0.17 -1.47 8.31 37.16 0.31 -1.17 16 4 C 0.19 2.39 2.17 -69.08 -0.15 2.24 16 5 H 0.10 1.37 7.14 -51.93 -0.37 1.00 16 6 C -0.11 -1.38 4.09 -104.62 -0.43 -1.81 16 7 C -0.10 -1.31 4.69 -39.58 -0.19 -1.50 16 8 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 9 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 10 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 11 C -0.11 -1.29 9.70 -39.58 -0.38 -1.67 16 12 N -1.00 -13.65 1.81 -115.86 -0.21 -13.86 16 13 C 0.05 0.53 7.18 59.84 0.43 0.96 16 14 S 2.59 48.67 5.36 -107.50 -0.58 48.09 16 15 O -0.96 -20.61 16.71 -57.54 -0.96 -21.58 16 16 O -0.97 -20.41 16.52 -57.54 -0.95 -21.36 16 17 C -0.59 -11.81 5.25 37.16 0.20 -11.61 16 18 C 0.03 0.79 4.98 -27.88 -0.14 0.65 16 19 C -0.51 -14.40 9.11 -34.43 -0.31 -14.72 16 20 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 23 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 27 H 0.08 0.60 4.33 -51.93 -0.22 0.37 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.68 4.64 -51.93 -0.24 0.44 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.43 7.94 -51.93 -0.41 0.02 16 32 H 0.08 0.79 4.96 -51.93 -0.26 0.53 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.13 1.46 5.70 -52.49 -0.30 1.16 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.05 0.47 6.27 -51.93 -0.33 0.15 16 40 H 0.11 0.91 2.63 -51.93 -0.14 0.78 16 41 H 0.08 0.99 6.80 -51.93 -0.35 0.64 16 42 H 0.12 2.10 8.14 -51.93 -0.42 1.68 16 43 H 0.12 2.36 6.38 -51.93 -0.33 2.03 16 44 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -34.43 360.42 -10.18 -44.61 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.72 Total: 3.17 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: -1.91 Total: -34.82 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.53 Total: -39.95 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -1.91 Total: -42.93 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 48.67 SS G_CDS: -0.58 Total: 48.09 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.43 -10.18 -44.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112706324.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.733 kcal (2) G-P(sol) polarization free energy of solvation -34.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds