Wall clock time and date at job start Tue Mar 31 2020 15:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47337 * 2 1 4 4 C 1.53003 * 109.47138 * 119.99963 * 2 1 3 5 5 H 1.09006 * 109.47129 * 174.00111 * 4 2 1 6 6 C 1.50695 * 109.47340 * 54.00175 * 4 2 1 7 7 C 1.38238 * 120.00058 * 270.59216 * 6 4 2 8 8 C 1.38234 * 120.00083 * 179.78615 * 7 6 4 9 9 C 1.38240 * 119.99654 * 0.43898 * 8 7 6 10 10 C 1.38230 * 120.00298 * 359.81315 * 9 8 7 11 11 C 1.38237 * 120.00143 * 359.97438 * 10 9 8 12 12 N 1.46501 * 109.46877 * 294.00195 * 4 2 1 13 13 C 1.46493 * 120.00182 * 19.57443 * 12 4 2 14 14 S 1.65603 * 119.99637 * 199.57520 * 12 4 2 15 15 O 1.42100 * 104.27891 * 26.07475 * 14 12 4 16 16 O 1.42099 * 104.27740 * 153.92892 * 14 12 4 17 17 C 1.81396 * 104.45056 * 270.00094 * 14 12 4 18 18 C 1.53000 * 109.46975 * 180.02562 * 17 14 12 19 19 C 1.50713 * 109.46843 * 179.97438 * 18 17 14 20 20 H 1.07997 * 119.99868 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99725 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00139 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99807 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47100 * 89.99803 * 23 21 19 25 25 H 1.48500 * 109.47510 * 209.99929 * 23 21 19 26 26 H 1.48503 * 109.47160 * 330.00125 * 23 21 19 27 27 H 1.09000 * 109.47204 * 321.72946 * 1 2 3 28 28 H 1.09000 * 109.46921 * 81.73172 * 1 2 3 29 29 H 1.09002 * 109.47038 * 201.72646 * 1 2 3 30 30 H 1.08997 * 109.47642 * 239.99710 * 2 1 3 31 31 H 1.09000 * 109.46767 * 322.76151 * 3 2 1 32 32 H 1.08997 * 109.46961 * 82.76128 * 3 2 1 33 33 H 1.08994 * 109.47335 * 202.76333 * 3 2 1 34 34 H 1.08002 * 119.99990 * 359.97438 * 7 6 4 35 35 H 1.07996 * 120.00157 * 180.27190 * 8 7 6 36 36 H 1.07999 * 119.99533 * 179.83369 * 9 8 7 37 37 H 1.08001 * 120.00078 * 180.02562 * 10 9 8 38 38 H 1.07994 * 120.00412 * 179.97438 * 11 10 9 39 39 H 1.09004 * 109.46907 * 84.14382 * 13 12 4 40 40 H 1.08996 * 109.46919 * 324.14239 * 13 12 4 41 41 H 1.09002 * 109.47166 * 204.13876 * 13 12 4 42 42 H 1.08998 * 109.47342 * 300.00128 * 17 14 12 43 43 H 1.08997 * 109.47241 * 60.00404 * 17 14 12 44 44 H 1.09000 * 109.47384 * 299.99730 * 18 17 14 45 45 H 1.08994 * 109.47432 * 60.00248 * 18 17 14 46 46 H 0.96999 * 119.99866 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1247 -0.8152 1.1972 6 6 1.4201 -2.0927 1.3258 7 6 0.2165 -2.2716 1.9818 8 6 -0.3543 -3.5288 2.0482 9 6 0.2831 -4.6088 1.4664 10 6 1.4892 -4.4309 0.8149 11 6 2.0578 -3.1728 0.7447 12 7 1.6730 0.0477 2.4410 13 6 0.5950 1.0372 2.3711 14 16 2.4769 -0.2017 3.8672 15 8 3.7530 -0.6849 3.4704 16 8 2.3441 1.0295 4.5642 17 6 1.5314 -1.5083 4.6973 18 6 2.1821 -1.8318 6.0437 19 6 1.3961 -2.9170 6.7337 20 1 0.5204 -3.3344 6.2591 21 6 1.7957 -3.3775 7.9703 22 7 2.8624 -2.8695 8.5480 23 14 0.8212 -4.7220 8.8258 24 1 1.3593 -6.0494 8.4335 25 1 0.9357 -4.5567 10.2971 26 1 -0.6062 -4.6290 8.4268 27 1 -0.3633 0.8068 0.6365 28 1 -0.3633 0.1478 -1.0170 29 1 -0.3633 -0.9547 0.3804 30 1 1.8933 -0.5138 -0.8899 31 1 1.3897 2.0578 -0.6219 32 1 2.0390 1.8282 1.0195 33 1 3.0545 1.4692 -0.3976 34 1 -0.2794 -1.4285 2.4398 35 1 -1.2967 -3.6678 2.5569 36 1 -0.1616 -5.5915 1.5206 37 1 1.9869 -5.2746 0.3601 38 1 3.0003 -3.0338 0.2361 39 1 -0.3648 0.5391 2.5087 40 1 0.6140 1.5270 1.3976 41 1 0.7336 1.7816 3.1552 42 1 0.5086 -1.1689 4.8607 43 1 1.5222 -2.4023 4.0738 44 1 3.2050 -2.1712 5.8808 45 1 2.1909 -0.9378 6.6672 46 1 3.1437 -3.1938 9.4178 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112706324.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:37 Heat of formation + Delta-G solvation = -44.308044 kcal Electronic energy + Delta-G solvation = -27433.763134 eV Core-core repulsion = 23836.762841 eV Total energy + Delta-G solvation = -3597.000293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.16709 -38.69352 -38.23732 -37.04195 -35.90768 -33.94164 -33.17127 -32.54716 -31.72201 -28.96362 -27.74322 -27.60328 -25.23279 -23.51917 -23.37351 -22.54336 -21.18891 -19.78255 -19.15648 -18.45321 -17.91240 -17.22163 -16.98322 -16.57271 -16.18641 -16.11132 -15.74070 -15.61826 -15.20389 -15.01206 -14.47311 -14.41540 -14.15486 -14.01601 -13.71876 -13.45327 -13.28893 -13.20398 -13.16310 -13.02121 -12.93322 -12.79444 -12.75757 -12.54246 -12.31571 -12.25872 -12.14348 -11.84584 -11.76089 -11.65926 -11.60182 -11.17152 -10.85353 -10.65577 -9.97075 -9.70456 -9.51410 -8.26267 -6.40038 -0.72783 0.45153 0.56117 1.39139 1.41258 1.52275 1.71715 2.37195 2.79427 2.90759 3.06998 3.14420 3.68053 3.71899 3.93567 4.00463 4.07949 4.14212 4.17920 4.24251 4.31719 4.37722 4.50589 4.67821 4.71317 4.73533 4.77283 4.79040 4.86148 4.93453 5.01267 5.08964 5.12615 5.18540 5.24247 5.24630 5.27177 5.33326 5.48075 5.54946 5.62864 5.63989 5.67534 5.69502 5.83674 6.05883 6.16447 6.72679 7.29822 8.86313 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.004957 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.723301 B = 5646.948480 C = 6923.051529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.079 4.079 3 C -0.169 4.169 4 C 0.190 3.810 5 H 0.088 0.912 6 C -0.119 4.119 7 C -0.115 4.115 8 C -0.131 4.131 9 C -0.127 4.127 10 C -0.127 4.127 11 C -0.120 4.120 12 N -0.984 5.984 13 C 0.038 3.962 14 S 2.607 3.393 15 O -0.994 6.994 16 O -0.992 6.992 17 C -0.584 4.584 18 C 0.026 3.974 19 C -0.533 4.533 20 H 0.074 0.926 21 C -0.002 4.002 22 N -0.935 5.935 23 Si 0.972 3.028 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.257 1.257 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.074 0.926 40 H 0.133 0.867 41 H 0.073 0.927 42 H 0.140 0.860 43 H 0.131 0.869 44 H 0.000 1.000 45 H 0.005 0.995 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.592 3.032 -21.688 23.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.099 4.099 3 C -0.225 4.225 4 C 0.084 3.916 5 H 0.106 0.894 6 C -0.121 4.121 7 C -0.133 4.133 8 C -0.149 4.149 9 C -0.145 4.145 10 C -0.145 4.145 11 C -0.139 4.139 12 N -0.822 5.822 13 C -0.105 4.105 14 S 2.705 3.295 15 O -0.984 6.984 16 O -0.982 6.982 17 C -0.716 4.716 18 C -0.013 4.013 19 C -0.572 4.572 20 H 0.092 0.908 21 C -0.201 4.201 22 N -0.575 5.575 23 Si 0.796 3.204 24 H -0.197 1.197 25 H -0.207 1.207 26 H -0.180 1.180 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.093 0.907 40 H 0.151 0.849 41 H 0.091 0.909 42 H 0.158 0.842 43 H 0.150 0.850 44 H 0.018 0.982 45 H 0.023 0.977 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.706 3.561 -21.280 22.911 hybrid contribution -0.351 -1.181 1.028 1.605 sum -8.057 2.379 -20.252 21.926 Atomic orbital electron populations 1.22721 0.93816 1.04104 1.03062 1.21201 0.97455 0.96342 0.94944 1.22252 1.01756 0.95458 1.03072 1.20007 0.98952 0.86967 0.85641 0.89388 1.20418 0.96138 0.95566 0.99946 1.21243 0.95292 0.98015 0.98729 1.21425 1.00976 0.92948 0.99580 1.21464 0.95823 0.99573 0.97610 1.21396 0.95982 0.97467 0.99631 1.21229 1.00167 0.92526 0.99958 1.57227 1.51083 1.50483 1.23391 1.22932 0.88951 0.91862 1.06798 1.04858 0.75042 0.75598 0.73979 1.93469 1.40194 1.83169 1.81559 1.93480 1.87293 1.42941 1.74488 1.30448 1.14319 1.17565 1.09296 1.18773 0.95373 0.97345 0.89803 1.21444 1.12362 1.20100 1.03264 0.90793 1.26096 0.96208 0.99566 0.98203 1.70105 1.26130 1.44184 1.17078 0.85337 0.79308 0.78496 0.77285 1.19664 1.20735 1.18035 0.89503 0.91826 0.91821 0.88838 0.90070 0.91525 0.92620 0.84902 0.84898 0.84555 0.84203 0.84823 0.90714 0.84940 0.90881 0.84224 0.85049 0.98162 0.97682 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 8.09 71.98 0.58 -1.92 16 2 C -0.08 -1.30 2.79 -10.79 -0.03 -1.33 16 3 C -0.17 -2.58 8.31 71.98 0.60 -1.98 16 4 C 0.19 4.47 2.17 44.24 0.10 4.56 16 5 H 0.09 2.34 7.14 -2.38 -0.02 2.32 16 6 C -0.12 -2.87 4.09 -19.87 -0.08 -2.95 16 7 C -0.11 -2.71 4.69 22.27 0.10 -2.60 16 8 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 9 C -0.13 -2.80 10.05 22.27 0.22 -2.57 16 10 C -0.13 -2.77 10.05 22.27 0.22 -2.54 16 11 C -0.12 -2.80 9.70 22.27 0.22 -2.58 16 12 N -0.98 -25.99 1.81 -520.46 -0.94 -26.93 16 13 C 0.04 0.75 7.18 127.77 0.92 1.66 16 14 S 2.61 99.69 5.36 -56.49 -0.30 99.39 16 15 O -0.99 -43.86 16.71 -127.65 -2.13 -45.99 16 16 O -0.99 -42.77 16.52 -127.65 -2.11 -44.88 16 17 C -0.58 -23.70 5.25 71.98 0.38 -23.32 16 18 C 0.03 1.41 4.98 29.85 0.15 1.55 16 19 C -0.53 -30.11 9.11 25.60 0.23 -29.88 16 20 H 0.07 3.88 7.74 -2.91 -0.02 3.85 16 21 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 22 N -0.94 -57.79 13.29 21.45 0.28 -57.51 16 23 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 27 H 0.09 1.02 4.33 -2.39 -0.01 1.01 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 29 H 0.06 1.03 4.64 -2.39 -0.01 1.02 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 0.90 7.94 -2.39 -0.02 0.88 16 32 H 0.07 1.20 4.96 -2.39 -0.01 1.19 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.13 2.81 5.70 -2.91 -0.02 2.79 16 35 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 37 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 38 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.07 1.16 6.27 -2.38 -0.01 1.15 16 40 H 0.13 1.94 2.63 -2.39 -0.01 1.94 16 41 H 0.07 1.65 6.80 -2.39 -0.02 1.63 16 42 H 0.14 4.92 8.14 -2.39 -0.02 4.90 16 43 H 0.13 5.06 6.38 -2.39 -0.02 5.04 16 44 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.00 0.28 8.14 -2.39 -0.02 0.27 16 46 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -75.97 360.42 2.10 -73.87 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.98 Total: 22.64 kcal Atomic # 6 Polarization: -70.69 SS G_CDS: 4.30 Total: -66.40 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -0.66 Total: -84.44 kcal Atomic # 8 Polarization: -86.63 SS G_CDS: -4.24 Total: -90.87 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 99.69 SS G_CDS: -0.30 Total: 99.39 kcal Total: -75.97 2.10 -73.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112706324.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.562 kcal (2) G-P(sol) polarization free energy of solvation -75.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds