Wall clock time and date at job start Tue Mar 31 2020 14:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46796 * 2 1 4 4 C 1.38361 * 119.84991 * 90.00547 * 3 2 1 5 5 C 1.37958 * 120.14298 * 180.02562 * 4 3 2 6 6 C 1.39574 * 119.85394 * 0.02562 * 5 4 3 7 7 C 1.47847 * 120.14521 * 179.97438 * 6 5 4 8 8 O 1.21544 * 119.99951 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99646 * 180.02562 * 7 6 5 10 10 C 1.46508 * 119.99681 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47169 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96224 * 270.02412 * 11 10 9 13 13 C 1.38281 * 120.13505 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.06679 * 359.68445 * 13 12 11 15 15 C 1.38852 * 119.93490 * 0.58817 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.70368 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46814 * 90.00164 * 21 19 17 23 23 H 1.48501 * 109.47378 * 210.00272 * 21 19 17 24 24 H 1.48503 * 109.47143 * 330.00397 * 21 19 17 25 25 C 1.38073 * 119.96539 * 89.99807 * 11 10 9 26 26 C 1.39582 * 119.71209 * 0.25503 * 6 5 4 27 27 C 1.37965 * 119.84708 * 359.47055 * 26 6 5 28 28 H 1.09000 * 109.47173 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47384 * 299.99310 * 1 2 3 30 30 H 1.08999 * 109.47138 * 59.99699 * 1 2 3 31 31 H 1.09001 * 109.46924 * 240.00072 * 2 1 3 32 32 H 1.08999 * 109.47138 * 120.00301 * 2 1 3 33 33 H 1.08001 * 119.93100 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.07334 * 179.97438 * 5 4 3 35 35 H 0.96993 * 120.00552 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.46757 * 59.99773 * 10 9 7 37 37 H 1.08998 * 109.46890 * 300.00426 * 10 9 7 38 38 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 39 39 H 1.07993 * 119.96315 * 179.97438 * 13 12 11 40 40 H 1.08001 * 120.03256 * 180.31909 * 14 13 12 41 41 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.03547 * 0.04988 * 25 11 10 43 43 H 1.07993 * 120.07460 * 179.72736 * 26 6 5 44 44 H 1.08001 * 119.92380 * 180.27009 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2619 2.0701 1.2001 5 6 2.7212 3.3710 1.2071 6 6 2.9537 4.0323 0.0002 7 6 3.4453 5.4266 0.0002 8 8 3.6475 5.9997 1.0528 9 7 3.6683 6.0625 -1.1670 10 6 4.1550 7.4444 -1.1670 11 6 4.3203 7.9188 -2.5877 12 6 5.5262 7.7377 -3.2407 13 6 5.6816 8.1712 -4.5446 14 6 4.6304 8.7807 -5.2011 15 6 3.4204 8.9690 -4.5466 16 8 2.3872 9.5731 -5.1872 17 6 2.6367 10.0747 -6.4136 18 1 3.5992 9.9150 -6.8768 19 6 1.6575 10.7955 -7.0801 20 7 0.4853 10.9904 -6.5158 21 14 2.0035 11.4910 -8.7790 22 1 1.6201 10.4932 -9.8098 23 1 1.2144 12.7336 -8.9753 24 1 3.4509 11.7992 -8.9024 25 6 3.2676 8.5332 -3.2365 26 6 2.7144 3.3735 -1.2069 27 6 2.2605 2.0707 -1.1999 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0812 1.5575 2.1333 34 1 2.8997 3.8769 2.1445 35 1 3.5067 5.6053 -2.0070 36 1 5.1155 7.4912 -0.6537 37 1 3.4366 8.0825 -0.6524 38 1 6.3481 7.2569 -2.7311 39 1 6.6245 8.0288 -5.0515 40 1 4.7507 9.1144 -6.2212 41 1 -0.1995 11.4949 -6.9819 42 1 2.3265 8.6746 -2.7260 43 1 2.8881 3.8811 -2.1442 44 1 2.0792 1.5583 -2.1332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113104372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:38 Heat of formation + Delta-G solvation = -26.661669 kcal Electronic energy + Delta-G solvation = -25353.176590 eV Core-core repulsion = 21621.497550 eV Total energy + Delta-G solvation = -3731.679040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.34789 -39.24200 -38.61863 -36.81965 -34.62868 -34.37153 -32.36230 -31.41341 -30.84431 -29.78363 -29.08024 -26.21201 -25.28528 -24.37360 -22.84273 -21.95734 -21.71640 -20.85739 -20.29220 -18.42863 -17.54861 -16.96579 -16.33441 -15.76113 -15.43123 -15.20111 -15.07984 -14.95709 -14.50259 -14.42095 -14.03471 -13.94844 -13.66485 -13.64189 -13.50248 -13.34703 -12.81128 -12.65674 -12.44415 -12.28077 -11.97697 -11.69228 -11.60046 -11.42202 -11.37162 -11.12803 -10.95811 -10.85179 -10.72897 -10.49691 -9.99294 -9.43451 -9.22917 -9.13522 -8.91492 -8.85929 -8.27587 -7.35664 -6.51156 -4.10776 0.65020 1.14290 1.87048 2.24140 2.77696 3.07916 3.09763 3.14589 3.33069 3.69441 3.90745 4.35411 4.46359 4.47581 4.66523 4.75628 4.83432 4.92877 4.98331 5.04571 5.11818 5.17437 5.23470 5.26658 5.50986 5.53254 5.57171 5.63849 5.71935 5.76196 5.82039 5.85064 5.89368 6.04875 6.07110 6.16384 6.23055 6.29013 6.43137 6.52870 6.65222 6.79003 6.97005 7.15958 7.24593 7.33056 7.53470 7.68706 7.92851 8.20522 8.94131 9.62525 10.66557 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014689 B = 0.002280 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.679292 B =12275.325180 C =13300.618059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.060 4.060 4 C -0.128 4.128 5 C -0.057 4.057 6 C -0.136 4.136 7 C 0.556 3.444 8 O -0.543 6.543 9 N -0.715 5.715 10 C 0.168 3.832 11 C -0.074 4.074 12 C -0.195 4.195 13 C -0.076 4.076 14 C -0.225 4.225 15 C 0.150 3.850 16 O -0.176 6.176 17 C -0.394 4.394 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.171 4.171 26 C -0.081 4.081 27 C -0.125 4.125 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.402 0.598 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.271 0.729 42 H 0.118 0.882 43 H 0.129 0.871 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.017 -19.025 9.950 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.061 4.061 4 C -0.146 4.146 5 C -0.076 4.076 6 C -0.139 4.139 7 C 0.343 3.657 8 O -0.422 6.422 9 N -0.366 5.366 10 C 0.045 3.955 11 C -0.075 4.075 12 C -0.215 4.215 13 C -0.094 4.094 14 C -0.245 4.245 15 C 0.096 3.904 16 O -0.079 6.079 17 C -0.470 4.470 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.191 4.191 26 C -0.100 4.100 27 C -0.143 4.143 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.145 0.855 34 H 0.153 0.847 35 H 0.238 0.762 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.146 0.854 41 H 0.081 0.919 42 H 0.136 0.864 43 H 0.146 0.854 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.697 -18.408 10.698 21.610 hybrid contribution 0.157 0.257 -1.455 1.486 sum 3.854 -18.151 9.243 20.731 Atomic orbital electron populations 1.21757 0.94377 1.01887 1.02522 1.20615 0.96447 0.92395 1.03121 1.20135 0.96506 0.96225 0.93197 1.21010 1.01086 0.94752 0.97788 1.21262 0.94722 0.93882 0.97768 1.19981 1.05058 0.94407 0.94494 1.18292 0.77643 0.85910 0.83864 1.90755 1.52498 1.67756 1.31195 1.46062 1.67125 1.14963 1.08494 1.20186 1.00010 0.81361 0.93931 1.19260 0.94115 0.99959 0.94126 1.20487 0.97117 1.07985 0.95883 1.20747 0.97538 0.96810 0.94316 1.21243 0.94096 1.07443 1.01705 1.19321 0.87796 0.91876 0.91371 1.83983 1.30818 1.62860 1.30239 1.21325 1.01490 1.33504 0.90653 0.89023 1.25301 0.94784 0.96400 0.99986 1.70033 1.03897 1.37676 1.37908 0.85708 0.78805 0.78602 0.80300 1.19840 1.20199 1.19166 1.20095 0.99434 1.06252 0.93289 1.21377 0.96574 0.94779 0.97225 1.20988 1.00765 0.94699 0.97886 0.92251 0.92422 0.92311 0.90747 0.90817 0.85494 0.84660 0.76177 0.90752 0.90660 0.87471 0.87255 0.85444 0.91922 0.86360 0.85353 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 2 C -0.09 -0.54 6.06 -27.88 -0.17 -0.71 16 3 C -0.06 -0.51 5.14 -104.53 -0.54 -1.04 16 4 C -0.13 -1.15 9.68 -39.64 -0.38 -1.53 16 5 C -0.06 -0.63 9.60 -39.19 -0.38 -1.01 16 6 C -0.14 -1.65 5.87 -104.97 -0.62 -2.27 16 7 C 0.56 8.06 7.77 -12.33 -0.10 7.97 16 8 O -0.54 -9.55 16.35 5.33 0.09 -9.46 16 9 N -0.72 -9.73 5.50 -62.43 -0.34 -10.07 16 10 C 0.17 2.49 5.80 -5.19 -0.03 2.46 16 11 C -0.07 -1.24 5.25 -104.65 -0.55 -1.79 16 12 C -0.20 -3.16 9.70 -39.53 -0.38 -3.55 16 13 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 14 C -0.23 -4.66 9.17 -39.40 -0.36 -5.02 16 15 C 0.15 3.48 6.65 -39.11 -0.26 3.22 16 16 O -0.18 -4.87 9.76 0.05 0.00 -4.87 16 17 C -0.39 -10.71 9.49 30.89 0.29 -10.42 16 18 H 0.09 2.30 5.21 -52.49 -0.27 2.02 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -24.83 13.67 55.48 0.76 -24.07 16 21 Si 0.94 20.07 29.55 -169.99 -5.02 15.05 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 C -0.17 -3.44 9.65 -39.39 -0.38 -3.82 16 26 C -0.08 -0.83 9.54 -39.18 -0.37 -1.20 16 27 C -0.13 -1.11 9.68 -39.64 -0.38 -1.50 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.14 1.49 7.65 -52.49 -0.40 1.09 16 35 H 0.40 4.86 6.50 -40.82 -0.27 4.59 16 36 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 37 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 38 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.13 2.64 5.64 -52.49 -0.30 2.35 16 41 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 43 H 0.13 1.14 6.41 -52.49 -0.34 0.81 16 44 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -31.76 377.37 -9.33 -41.09 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.77 Total: 8.09 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -4.73 Total: -21.44 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.42 Total: -34.14 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.09 Total: -14.33 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.76 -9.33 -41.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113104372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.431 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds