Wall clock time and date at job start Tue Mar 31 2020 14:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46796 * 2 1 4 4 C 1.38361 * 119.84991 * 90.00547 * 3 2 1 5 5 C 1.37958 * 120.14298 * 180.02562 * 4 3 2 6 6 C 1.39574 * 119.85394 * 0.02562 * 5 4 3 7 7 C 1.47847 * 120.14521 * 179.97438 * 6 5 4 8 8 O 1.21544 * 119.99951 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99646 * 180.02562 * 7 6 5 10 10 C 1.46508 * 119.99681 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47169 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96224 * 270.02412 * 11 10 9 13 13 C 1.38281 * 120.13505 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.06679 * 359.68445 * 13 12 11 15 15 C 1.38852 * 119.93490 * 0.58817 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.70368 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46814 * 90.00164 * 21 19 17 23 23 H 1.48501 * 109.47378 * 210.00272 * 21 19 17 24 24 H 1.48503 * 109.47143 * 330.00397 * 21 19 17 25 25 C 1.38073 * 119.96539 * 89.99807 * 11 10 9 26 26 C 1.39582 * 119.71209 * 0.25503 * 6 5 4 27 27 C 1.37965 * 119.84708 * 359.47055 * 26 6 5 28 28 H 1.09000 * 109.47173 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47384 * 299.99310 * 1 2 3 30 30 H 1.08999 * 109.47138 * 59.99699 * 1 2 3 31 31 H 1.09001 * 109.46924 * 240.00072 * 2 1 3 32 32 H 1.08999 * 109.47138 * 120.00301 * 2 1 3 33 33 H 1.08001 * 119.93100 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.07334 * 179.97438 * 5 4 3 35 35 H 0.96993 * 120.00552 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.46757 * 59.99773 * 10 9 7 37 37 H 1.08998 * 109.46890 * 300.00426 * 10 9 7 38 38 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 39 39 H 1.07993 * 119.96315 * 179.97438 * 13 12 11 40 40 H 1.08001 * 120.03256 * 180.31909 * 14 13 12 41 41 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.03547 * 0.04988 * 25 11 10 43 43 H 1.07993 * 120.07460 * 179.72736 * 26 6 5 44 44 H 1.08001 * 119.92380 * 180.27009 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2619 2.0701 1.2001 5 6 2.7212 3.3710 1.2071 6 6 2.9537 4.0323 0.0002 7 6 3.4453 5.4266 0.0002 8 8 3.6475 5.9997 1.0528 9 7 3.6683 6.0625 -1.1670 10 6 4.1550 7.4444 -1.1670 11 6 4.3203 7.9188 -2.5877 12 6 5.5262 7.7377 -3.2407 13 6 5.6816 8.1712 -4.5446 14 6 4.6304 8.7807 -5.2011 15 6 3.4204 8.9690 -4.5466 16 8 2.3872 9.5731 -5.1872 17 6 2.6367 10.0747 -6.4136 18 1 3.5992 9.9150 -6.8768 19 6 1.6575 10.7955 -7.0801 20 7 0.4853 10.9904 -6.5158 21 14 2.0035 11.4910 -8.7790 22 1 1.6201 10.4932 -9.8098 23 1 1.2144 12.7336 -8.9753 24 1 3.4509 11.7992 -8.9024 25 6 3.2676 8.5332 -3.2365 26 6 2.7144 3.3735 -1.2069 27 6 2.2605 2.0707 -1.1999 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0812 1.5575 2.1333 34 1 2.8997 3.8769 2.1445 35 1 3.5067 5.6053 -2.0070 36 1 5.1155 7.4912 -0.6537 37 1 3.4366 8.0825 -0.6524 38 1 6.3481 7.2569 -2.7311 39 1 6.6245 8.0288 -5.0515 40 1 4.7507 9.1144 -6.2212 41 1 -0.1995 11.4949 -6.9819 42 1 2.3265 8.6746 -2.7260 43 1 2.8881 3.8811 -2.1442 44 1 2.0792 1.5583 -2.1332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113104372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:37 Heat of formation + Delta-G solvation = -44.639924 kcal Electronic energy + Delta-G solvation = -25353.956186 eV Core-core repulsion = 21621.497550 eV Total energy + Delta-G solvation = -3732.458636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.38235 -40.77916 -39.64052 -38.45370 -35.90582 -35.04949 -34.29508 -32.52149 -31.81699 -30.92543 -30.38041 -27.65936 -26.96595 -25.21656 -23.61215 -23.28506 -22.77440 -22.37734 -21.23083 -19.80582 -19.13976 -18.53173 -17.38128 -16.85455 -16.63224 -16.48116 -16.13275 -16.01979 -16.00779 -15.84387 -15.48846 -15.04889 -14.74817 -14.55177 -14.40220 -14.28441 -14.13151 -13.95389 -13.75162 -13.45242 -13.29611 -13.03688 -12.69947 -12.55251 -12.41276 -12.29331 -12.19955 -12.12100 -11.97639 -11.68935 -11.24486 -11.14640 -10.81535 -10.27607 -9.97481 -9.78708 -9.69178 -9.05295 -8.47672 -6.16331 -0.18424 0.35607 0.39788 0.68618 1.35577 1.44358 1.52972 1.78857 2.15879 2.17645 2.83868 2.84597 3.14235 3.37422 3.61961 3.77165 3.83418 3.91827 4.00126 4.07492 4.26898 4.28720 4.38488 4.40402 4.50692 4.52829 4.55709 4.62687 4.65543 4.71241 4.94350 4.99401 5.00588 5.10784 5.11299 5.12898 5.23263 5.25338 5.32821 5.38048 5.41783 5.60461 5.61917 5.68688 5.69813 5.92756 6.00698 6.14399 6.43810 6.97095 7.08585 7.77085 8.75440 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014689 B = 0.002280 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.679292 B =12275.325180 C =13300.618059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.055 4.055 4 C -0.128 4.128 5 C -0.070 4.070 6 C -0.160 4.160 7 C 0.556 3.444 8 O -0.581 6.581 9 N -0.709 5.709 10 C 0.173 3.827 11 C -0.060 4.060 12 C -0.168 4.168 13 C -0.068 4.068 14 C -0.233 4.233 15 C 0.113 3.887 16 O -0.232 6.232 17 C -0.412 4.412 18 H 0.104 0.896 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.252 1.252 25 C -0.182 4.182 26 C -0.084 4.084 27 C -0.129 4.129 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.150 0.850 34 H 0.127 0.873 35 H 0.411 0.589 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.122 0.878 41 H 0.272 0.728 42 H 0.106 0.894 43 H 0.138 0.862 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.387 -21.703 9.688 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 C -0.056 4.056 4 C -0.146 4.146 5 C -0.089 4.089 6 C -0.163 4.163 7 C 0.345 3.655 8 O -0.462 6.462 9 N -0.361 5.361 10 C 0.050 3.950 11 C -0.060 4.060 12 C -0.187 4.187 13 C -0.086 4.086 14 C -0.252 4.252 15 C 0.063 3.937 16 O -0.138 6.138 17 C -0.488 4.488 18 H 0.122 0.878 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.175 1.175 25 C -0.202 4.202 26 C -0.103 4.103 27 C -0.147 4.147 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.167 0.833 34 H 0.145 0.855 35 H 0.248 0.752 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.166 0.834 39 H 0.168 0.832 40 H 0.140 0.860 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.156 0.844 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.113 -21.131 10.446 24.352 hybrid contribution -0.403 0.839 -1.117 1.454 sum 5.710 -20.293 9.329 23.053 Atomic orbital electron populations 1.21758 0.94221 1.02635 1.01935 1.20681 0.96406 0.90847 1.04437 1.20495 0.94974 0.97330 0.92757 1.21268 1.00220 0.93909 0.99190 1.21342 0.95475 0.94906 0.97193 1.19885 1.07254 0.93358 0.95783 1.18680 0.76818 0.86753 0.83264 1.90728 1.54300 1.68822 1.32389 1.45945 1.66887 1.14350 1.08871 1.20088 1.00607 0.81925 0.92395 1.19413 0.93454 0.98441 0.94729 1.21001 0.97337 1.05110 0.95284 1.21166 0.97893 0.94937 0.94616 1.21380 0.94189 1.07913 1.01727 1.19842 0.88427 0.92912 0.92569 1.83951 1.33220 1.65575 1.31091 1.21832 1.02233 1.33735 0.91048 0.87829 1.26595 0.94351 0.96616 1.04540 1.70185 1.05389 1.40045 1.40323 0.84589 0.79328 0.77800 0.74531 1.18711 1.19860 1.17532 1.20216 1.00267 1.07021 0.92657 1.21519 0.96466 0.95445 0.96836 1.21299 1.00027 0.94213 0.99142 0.90883 0.92916 0.93033 0.89536 0.89482 0.83251 0.85475 0.75207 0.89234 0.91750 0.83427 0.83215 0.86034 0.91872 0.87549 0.84439 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 71.98 0.71 -0.68 16 2 C -0.09 -0.79 6.06 29.85 0.18 -0.61 16 3 C -0.06 -0.80 5.14 -19.81 -0.10 -0.90 16 4 C -0.13 -2.06 9.68 22.23 0.22 -1.85 16 5 C -0.07 -1.52 9.60 22.53 0.22 -1.30 16 6 C -0.16 -3.79 5.87 -20.09 -0.12 -3.91 16 7 C 0.56 16.01 7.77 86.79 0.67 16.68 16 8 O -0.58 -20.64 16.35 -3.85 -0.06 -20.70 16 9 N -0.71 -18.58 5.50 -469.70 -2.58 -21.17 16 10 C 0.17 4.91 5.80 85.63 0.50 5.41 16 11 C -0.06 -1.91 5.25 -19.88 -0.10 -2.02 16 12 C -0.17 -4.78 9.70 22.30 0.22 -4.57 16 13 C -0.07 -2.12 10.04 22.25 0.22 -1.90 16 14 C -0.23 -9.49 9.17 22.39 0.21 -9.29 16 15 C 0.11 5.40 6.65 22.58 0.15 5.55 16 16 O -0.23 -13.65 9.76 -22.74 -0.22 -13.87 16 17 C -0.41 -23.47 9.49 67.92 0.64 -22.82 16 18 H 0.10 5.35 5.21 -2.91 -0.02 5.33 16 19 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 20 N -0.92 -56.18 13.67 21.61 0.30 -55.88 16 21 Si 1.02 42.07 29.55 68.60 2.03 44.09 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 24 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 25 C -0.18 -7.49 9.65 22.39 0.22 -7.27 16 26 C -0.08 -1.60 9.54 22.53 0.21 -1.39 16 27 C -0.13 -2.00 9.68 22.23 0.22 -1.79 16 28 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.62 8.08 -2.39 -0.02 0.60 16 32 H 0.09 0.60 8.08 -2.39 -0.02 0.58 16 33 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.13 2.87 7.65 -2.91 -0.02 2.85 16 35 H 0.41 9.36 6.50 -92.71 -0.60 8.76 16 36 H 0.09 2.34 8.09 -2.38 -0.02 2.32 16 37 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 38 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 39 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 40 H 0.12 5.04 5.64 -2.91 -0.02 5.02 16 41 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 42 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 43 H 0.14 2.24 6.41 -2.91 -0.02 2.22 16 44 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -74.27 377.37 4.60 -69.67 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.42 Total: 31.35 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: 4.72 Total: -33.49 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -2.29 Total: -77.05 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.28 Total: -34.58 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -74.27 4.60 -69.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113104372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.035 kcal (2) G-P(sol) polarization free energy of solvation -74.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds