Wall clock time and date at job start Tue Mar 31 2020 14:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47376 * 2 1 4 4 C 1.53005 * 109.46875 * 64.99862 * 3 2 1 5 5 C 1.53003 * 109.47093 * 185.92221 * 4 3 2 6 6 C 1.52996 * 109.47426 * 184.99834 * 3 2 1 7 7 N 1.46499 * 109.46741 * 63.63565 * 6 3 2 8 8 C 1.46496 * 120.00171 * 263.92022 * 7 6 3 9 9 C 1.50699 * 109.47480 * 262.11063 * 8 7 6 10 10 H 1.08001 * 119.99784 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00350 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99689 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99927 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47471 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47132 * 119.99582 * 13 11 9 16 16 H 1.48502 * 109.46931 * 239.99439 * 13 11 9 17 17 C 1.34783 * 120.00156 * 83.92358 * 7 6 3 18 18 O 1.21772 * 119.99459 * 1.91604 * 17 7 6 19 19 C 1.41721 * 120.00262 * 181.91026 * 17 7 6 20 20 S 1.75814 * 125.47258 * 351.85909 * 19 17 7 21 21 C 1.70580 * 91.65740 * 180.02562 * 20 19 17 22 22 C 1.33610 * 111.14670 * 359.97438 * 21 20 19 23 23 C 1.37268 * 125.47499 * 171.87607 * 19 17 7 24 24 O 1.35781 * 123.47092 * 359.97438 * 23 19 17 25 25 C 1.42904 * 116.99954 * 179.97438 * 24 23 19 26 26 H 1.08999 * 109.47019 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46989 * 299.99418 * 1 2 3 28 28 H 1.09000 * 109.47241 * 59.99826 * 1 2 3 29 29 H 1.09003 * 109.46938 * 239.99800 * 2 1 3 30 30 H 1.09008 * 109.46981 * 120.00103 * 2 1 3 31 31 H 1.08995 * 109.47042 * 305.00215 * 3 2 1 32 32 H 1.08999 * 109.47188 * 305.92091 * 4 3 2 33 33 H 1.09002 * 109.47103 * 65.92462 * 4 3 2 34 34 H 1.09000 * 109.47095 * 183.93495 * 5 4 3 35 35 H 1.08994 * 109.47186 * 303.94010 * 5 4 3 36 36 H 1.09001 * 109.46845 * 63.93838 * 5 4 3 37 37 H 1.09001 * 109.47180 * 303.63820 * 6 3 2 38 38 H 1.08996 * 109.47459 * 183.63803 * 6 3 2 39 39 H 1.09002 * 109.47418 * 22.10883 * 8 7 6 40 40 H 1.09004 * 109.47309 * 142.11250 * 8 7 6 41 41 H 0.97004 * 119.99980 * 180.02562 * 12 11 9 42 42 H 1.08004 * 124.42569 * 179.73176 * 21 20 19 43 43 H 1.08003 * 122.45531 * 179.97438 * 22 21 20 44 44 H 1.09001 * 109.47048 * 299.99874 * 25 24 23 45 45 H 1.08991 * 109.46822 * 60.00426 * 25 24 23 46 46 H 1.08998 * 109.46825 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0147 3.6075 1.2469 6 6 3.5648 1.4443 -0.1257 7 7 3.9490 0.8677 -1.4165 8 6 4.3154 -0.5479 -1.5065 9 6 5.8162 -0.6813 -1.4770 10 1 6.4352 0.2003 -1.3994 11 6 6.3991 -1.9287 -1.5501 12 7 5.6453 -3.0021 -1.6451 13 14 8.2594 -2.0939 -1.5128 14 1 8.8740 -0.7467 -1.4017 15 1 8.6597 -2.9189 -0.3448 16 1 8.7234 -2.7477 -2.7629 17 6 3.9655 1.6396 -2.5213 18 8 3.6949 2.8241 -2.4404 19 6 4.2979 1.0727 -3.7769 20 16 4.9047 -0.5576 -4.0318 21 6 4.9942 -0.3139 -5.7178 22 6 4.5906 0.9159 -6.0491 23 6 4.1982 1.7084 -4.9894 24 8 3.7584 2.9851 -5.1317 25 6 3.7105 3.5106 -6.4597 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6054 1.9815 -0.8418 32 1 0.5585 2.0328 1.4482 33 1 2.1534 1.6524 2.1410 34 1 1.7904 4.0794 2.2035 35 1 3.0800 3.7013 1.0363 36 1 1.4439 4.0968 0.4577 37 1 3.9966 0.8508 0.6803 38 1 3.9336 2.4679 -0.0608 39 1 3.8860 -1.0887 -0.6631 40 1 3.9320 -0.9639 -2.4382 41 1 6.0553 -3.8797 -1.6962 42 1 5.3363 -1.0554 -6.4246 43 1 4.5736 1.2647 -7.0711 44 1 4.7107 3.4954 -6.8927 45 1 3.0420 2.9012 -7.0676 46 1 3.3428 4.5363 -6.4315 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114688224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:17 Heat of formation + Delta-G solvation = -65.026019 kcal Electronic energy + Delta-G solvation = -27046.723499 eV Core-core repulsion = 23448.824807 eV Total energy + Delta-G solvation = -3597.898692 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.22919 -40.25209 -38.13627 -36.65492 -36.29373 -34.39432 -32.63073 -31.37250 -29.82425 -28.66219 -27.61936 -25.79377 -25.25761 -24.46533 -23.42311 -21.72864 -20.64333 -20.30561 -18.89158 -18.48282 -17.84210 -17.06237 -16.72670 -16.62500 -16.29784 -15.97293 -15.70030 -15.36267 -14.97663 -14.86771 -14.52882 -14.37220 -14.34494 -14.10133 -14.02077 -13.57019 -13.46990 -13.12938 -12.87336 -12.85660 -12.71178 -12.64696 -12.31393 -12.28178 -12.12017 -12.08081 -11.86412 -11.73483 -11.45257 -11.30404 -11.23075 -10.80991 -10.65361 -10.52721 -9.61774 -9.35541 -8.71032 -8.19758 -6.26504 -0.18698 0.92645 1.37548 1.46850 1.47304 1.54812 1.57493 2.33912 2.46767 2.54912 2.72771 3.10603 3.80183 3.94289 3.97720 4.06340 4.19610 4.37905 4.39526 4.41164 4.41744 4.47876 4.58875 4.62745 4.70409 4.76538 4.80630 4.82687 4.90119 4.95665 4.99203 5.08192 5.10156 5.13292 5.16141 5.27824 5.29864 5.37958 5.45159 5.50861 5.56963 5.68036 5.92432 5.98892 6.46364 6.57844 6.81643 7.31721 7.48235 8.82698 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008395 B = 0.006794 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3334.671154 B = 4120.156389 C = 6298.737320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C -0.092 4.092 4 C -0.108 4.108 5 C -0.151 4.151 6 C 0.125 3.875 7 N -0.601 5.601 8 C 0.239 3.761 9 C -0.541 4.541 10 H 0.049 0.951 11 C 0.051 3.949 12 N -0.894 5.894 13 Si 0.933 3.067 14 H -0.278 1.278 15 H -0.275 1.275 16 H -0.269 1.269 17 C 0.587 3.413 18 O -0.589 6.589 19 C -0.385 4.385 20 S 0.388 5.612 21 C -0.288 4.288 22 C -0.229 4.229 23 C 0.161 3.839 24 O -0.312 6.312 25 C 0.018 3.982 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.039 0.961 41 H 0.274 0.726 42 H 0.185 0.815 43 H 0.161 0.839 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.836 3.946 -3.303 7.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C -0.112 4.112 4 C -0.146 4.146 5 C -0.208 4.208 6 C 0.003 3.997 7 N -0.331 5.331 8 C 0.115 3.885 9 C -0.583 4.583 10 H 0.067 0.933 11 C -0.153 4.153 12 N -0.531 5.531 13 Si 0.759 3.241 14 H -0.203 1.203 15 H -0.201 1.201 16 H -0.194 1.194 17 C 0.379 3.621 18 O -0.474 6.474 19 C -0.505 4.505 20 S 0.662 5.338 21 C -0.426 4.426 22 C -0.262 4.262 23 C 0.099 3.901 24 O -0.225 6.225 25 C -0.077 4.077 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.202 0.798 43 H 0.179 0.821 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.705 3.232 -2.237 6.928 hybrid contribution 0.956 0.948 -1.377 1.926 sum -4.748 4.181 -3.614 7.286 Atomic orbital electron populations 1.21757 0.94517 1.01886 1.01891 1.21569 0.96928 0.95642 1.01500 1.21473 0.94409 0.96589 0.98687 1.21522 1.02091 0.95223 0.95783 1.21791 1.00911 0.96366 1.01717 1.21510 0.95295 0.98469 0.84453 1.48033 1.65752 1.11689 1.07585 1.19474 0.95204 0.76516 0.97275 1.21532 0.91924 0.93033 1.51781 0.93317 1.25304 1.01328 0.94989 0.93708 1.69959 1.36598 0.98661 1.47918 0.85869 0.81575 0.78161 0.78538 1.20256 1.20078 1.19397 1.15895 0.76984 0.85485 0.83707 1.90690 1.53542 1.16263 1.86949 1.23126 1.26648 1.04319 0.96452 1.86198 1.52861 1.03607 0.91091 1.26780 1.04259 1.01789 1.09765 1.19887 1.11284 0.95245 0.99762 1.18485 0.94280 0.85082 0.92246 1.86221 1.80009 1.24288 1.31938 1.23373 1.02625 1.00539 0.81166 0.92185 0.90975 0.93859 0.93993 0.91527 0.93587 0.90101 0.90948 0.90966 0.93939 0.93851 0.90300 0.92010 0.93591 0.94408 0.91685 0.79786 0.82134 0.91684 0.91398 0.86799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.68 71.98 0.70 -2.98 16 2 C -0.12 -3.76 4.76 30.59 0.15 -3.61 16 3 C -0.09 -3.06 2.02 -10.79 -0.02 -3.08 16 4 C -0.11 -2.80 5.28 30.60 0.16 -2.64 16 5 C -0.15 -3.94 9.77 71.98 0.70 -3.24 16 6 C 0.13 4.91 4.63 86.38 0.40 5.31 16 7 N -0.60 -27.19 2.17 -836.64 -1.82 -29.01 16 8 C 0.24 11.14 3.52 85.63 0.30 11.44 16 9 C -0.54 -26.82 6.85 25.60 0.18 -26.64 16 10 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 11 C 0.05 2.46 4.98 84.66 0.42 2.88 16 12 N -0.89 -43.93 13.29 21.45 0.28 -43.64 16 13 Si 0.93 39.23 29.54 68.60 2.03 41.25 16 14 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 15 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 16 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 17 C 0.59 28.73 7.35 85.10 0.63 29.36 16 18 O -0.59 -31.15 15.54 11.83 0.18 -30.96 16 19 C -0.39 -17.55 6.08 22.90 0.14 -17.42 16 20 S 0.39 16.06 15.55 -56.49 -0.88 15.18 16 21 C -0.29 -9.58 10.90 66.77 0.73 -8.85 16 22 C -0.23 -7.58 9.17 21.17 0.19 -7.38 16 23 C 0.16 6.55 6.70 21.99 0.15 6.69 16 24 O -0.31 -12.25 9.40 -74.69 -0.70 -12.95 16 25 C 0.02 0.44 9.94 113.37 1.13 1.57 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 1.55 6.44 -2.39 -0.02 1.54 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.14 16 29 H 0.04 1.56 6.10 -2.39 -0.01 1.54 16 30 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 1.80 6.31 -2.39 -0.02 1.79 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 35 H 0.04 1.25 6.35 -2.39 -0.02 1.23 16 36 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 2.96 8.01 -2.39 -0.02 2.94 16 38 H 0.06 2.54 5.80 -2.39 -0.01 2.52 16 39 H 0.05 2.21 6.96 -2.39 -0.02 2.19 16 40 H 0.04 1.86 4.47 -21.88 -0.10 1.76 16 41 H 0.27 12.69 8.31 -92.71 -0.77 11.92 16 42 H 0.18 4.82 8.06 -2.91 -0.02 4.79 16 43 H 0.16 4.05 6.99 -2.91 -0.02 4.03 16 44 H 0.06 1.40 7.88 -2.39 -0.02 1.38 16 45 H 0.07 1.42 7.88 -2.39 -0.02 1.40 16 46 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -62.22 370.94 5.93 -56.29 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.88 Total: 22.44 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: 5.95 Total: -18.60 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -1.53 Total: -72.65 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -0.52 Total: -43.91 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.25 kcal Atomic # 16 Polarization: 16.06 SS G_CDS: -0.88 Total: 15.18 kcal Total: -62.22 5.93 -56.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114688224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.736 kcal (2) G-P(sol) polarization free energy of solvation -62.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds