Wall clock time and date at job start Tue Mar 31 2020 14:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46500 * 109.46998 * 299.99786 * 4 2 1 6 6 S 1.65600 * 120.00242 * 164.99948 * 5 4 2 7 7 O 1.42094 * 104.27575 * 181.07211 * 6 5 4 8 8 O 1.42097 * 104.27601 * 308.93158 * 6 5 4 9 9 C 1.81403 * 104.44440 * 65.00053 * 6 5 4 10 10 C 1.53002 * 109.46498 * 180.02562 * 9 6 5 11 11 C 1.50705 * 109.47025 * 179.97438 * 10 9 6 12 12 H 1.08003 * 119.99909 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00063 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99601 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00100 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47093 * 89.99740 * 15 13 11 17 17 H 1.48497 * 109.46982 * 209.99980 * 15 13 11 18 18 H 1.48497 * 109.47256 * 329.99900 * 15 13 11 19 19 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 20 20 C 1.50706 * 109.46953 * 60.00071 * 19 2 1 21 21 C 1.38231 * 119.99890 * 269.72761 * 20 19 2 22 22 C 1.38243 * 119.99932 * 179.76127 * 21 20 19 23 23 C 1.38235 * 119.99614 * 0.51210 * 22 21 20 24 24 C 1.38238 * 120.00119 * 359.74635 * 23 22 21 25 25 C 1.38234 * 120.00044 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 0.97004 * 119.99709 * 345.00122 * 5 4 2 35 35 H 1.09001 * 109.47372 * 299.99697 * 9 6 5 36 36 H 1.08995 * 109.47394 * 60.00732 * 9 6 5 37 37 H 1.09003 * 109.47400 * 299.99700 * 10 9 6 38 38 H 1.08997 * 109.47368 * 60.00308 * 10 9 6 39 39 H 0.97003 * 119.99682 * 180.02562 * 14 13 11 40 40 H 1.09000 * 109.47486 * 180.02562 * 19 2 1 41 41 H 1.09001 * 109.47362 * 300.00732 * 19 2 1 42 42 H 1.08006 * 120.00368 * 0.02562 * 21 20 19 43 43 H 1.07997 * 120.00078 * 180.23244 * 22 21 20 44 44 H 1.08001 * 120.00016 * 179.71719 * 23 22 21 45 45 H 1.08003 * 119.99866 * 179.97438 * 24 23 22 46 46 H 1.07997 * 119.99975 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.5517 -0.0308 2.4454 6 16 1.6256 -0.7783 3.9213 7 8 1.0524 0.1619 4.8194 8 8 1.0210 -2.0455 3.7029 9 6 3.4006 -0.9670 4.2446 10 6 3.6023 -1.6544 5.5965 11 6 5.0769 -1.8118 5.8649 12 1 5.7980 -1.4567 5.1435 13 6 5.5054 -2.4082 7.0318 14 7 6.7923 -2.5460 7.2657 15 14 4.2583 -3.0217 8.2798 16 1 3.9100 -4.4335 7.9785 17 1 4.8393 -2.9354 9.6436 18 1 3.0342 -2.1841 8.2093 19 6 2.0400 -0.7213 -1.2492 20 6 1.5377 -0.0108 -2.4797 21 6 0.3326 -0.3800 -3.0473 22 6 -0.1306 0.2750 -4.1732 23 6 0.6165 1.2920 -4.7375 24 6 1.8242 1.6575 -4.1729 25 6 2.2846 1.0064 -3.0438 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 1.1850 0.8644 2.3729 35 1 3.8507 -1.5732 3.4584 36 1 3.8732 0.0150 4.2618 37 1 3.1522 -1.0485 6.3830 38 1 3.1298 -2.6364 5.5789 39 1 7.0938 -2.9659 8.0865 40 1 3.1300 -0.7217 -1.2490 41 1 1.6766 -1.7489 -1.2493 42 1 -0.2493 -1.1773 -2.6088 43 1 -1.0740 -0.0109 -4.6145 44 1 0.2569 1.8006 -5.6197 45 1 2.4081 2.4518 -4.6141 46 1 3.2283 1.2918 -2.6030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117370481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:10 Heat of formation + Delta-G solvation = -71.921890 kcal Electronic energy + Delta-G solvation = -25424.435815 eV Core-core repulsion = 21826.238096 eV Total energy + Delta-G solvation = -3598.197719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.11203 -37.95558 -36.66880 -35.55289 -33.94733 -33.91237 -31.48232 -31.23391 -31.08868 -27.47426 -27.30721 -25.96050 -25.60875 -22.74898 -21.70570 -21.30176 -19.29587 -19.00869 -17.63867 -16.96570 -16.91145 -16.23888 -15.66281 -15.48032 -15.39623 -14.86908 -14.75459 -14.56325 -14.26644 -13.77868 -13.71188 -13.52515 -13.13346 -13.00775 -12.81233 -12.73121 -12.09406 -11.94913 -11.89968 -11.81307 -11.70625 -11.60943 -11.57412 -11.25621 -11.21815 -11.18509 -11.10321 -10.97913 -10.65819 -10.44724 -10.14907 -9.79690 -9.48440 -9.16297 -9.13700 -8.91777 -8.66482 -6.16902 -4.18047 0.68674 1.08687 1.12802 3.05324 3.26479 3.33847 3.38187 3.50539 4.13355 4.31529 4.35700 4.47386 4.56960 4.67744 4.69919 4.72568 4.78031 4.89055 5.13044 5.14735 5.15832 5.24294 5.32014 5.39830 5.46971 5.53086 5.53644 5.56679 5.60144 5.69529 5.72859 5.79944 5.80283 5.86864 6.01224 6.11989 6.14242 6.20086 6.24550 6.28745 6.39273 6.73900 6.81952 6.92925 7.06417 7.54713 8.36256 8.84192 9.42876 10.95465 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.025776 B = 0.002508 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.029985 B =11161.291003 C =11664.658742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.062 4.062 3 C -0.147 4.147 4 C 0.123 3.877 5 N -1.123 6.123 6 S 2.591 3.409 7 O -0.969 6.969 8 O -0.967 6.967 9 C -0.583 4.583 10 C -0.007 4.007 11 C -0.519 4.519 12 H 0.078 0.922 13 C 0.071 3.929 14 N -0.896 5.896 15 Si 0.870 3.130 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.262 1.262 19 C -0.076 4.076 20 C -0.070 4.070 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.115 4.115 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.412 0.588 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.032 0.968 38 H 0.028 0.972 39 H 0.266 0.734 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.822 7.847 -23.764 27.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.063 4.063 3 C -0.205 4.205 4 C -0.003 4.003 5 N -0.882 5.882 6 S 2.688 3.312 7 O -0.959 6.959 8 O -0.957 6.957 9 C -0.716 4.716 10 C -0.047 4.047 11 C -0.558 4.558 12 H 0.096 0.904 13 C -0.132 4.132 14 N -0.534 5.534 15 Si 0.696 3.304 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.186 1.186 19 C -0.114 4.114 20 C -0.070 4.070 21 C -0.133 4.133 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.133 4.133 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.247 0.753 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.398 7.338 -23.106 27.229 hybrid contribution 0.056 0.180 0.394 0.437 sum -12.342 7.518 -22.712 26.919 Atomic orbital electron populations 1.21961 0.93936 1.02341 1.02057 1.20633 0.96550 0.96001 0.93144 1.21987 1.01307 0.95042 1.02131 1.21359 0.98573 0.96443 0.83958 1.55737 1.79227 1.29964 1.23299 1.05526 0.79053 0.74018 0.72568 1.93557 1.76693 1.62675 1.62968 1.93543 1.74661 1.43180 1.84283 1.30290 1.21365 1.10558 1.09387 1.19409 1.00910 0.95430 0.88923 1.20850 0.89028 1.40244 1.05660 0.90434 1.24995 0.95246 0.95101 0.97841 1.69887 1.13612 1.43649 1.26226 0.86916 0.82241 0.80155 0.81087 1.19669 1.20772 1.18625 1.20699 1.01221 0.98835 0.90609 1.19806 0.94741 0.96320 0.96180 1.21107 0.95938 1.00199 0.96050 1.21144 0.99823 0.96562 0.96384 1.21128 0.95319 0.97954 1.00176 1.21146 0.96455 0.99971 0.96339 1.21100 0.99999 0.96143 0.96043 0.92104 0.92336 0.92284 0.92433 0.92160 0.91906 0.90044 0.91436 0.75298 0.85764 0.85531 0.94966 0.95378 0.92392 0.90301 0.90329 0.86041 0.86300 0.86430 0.86280 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 7.73 37.16 0.29 -0.99 16 2 C -0.06 -0.51 0.56 -154.51 -0.09 -0.60 16 3 C -0.15 -1.16 7.71 37.15 0.29 -0.87 16 4 C 0.12 1.24 5.02 -4.04 -0.02 1.22 16 5 N -1.12 -13.28 5.22 -10.61 -0.06 -13.34 16 6 S 2.59 42.79 5.46 -107.50 -0.59 42.20 16 7 O -0.97 -18.83 18.08 -57.54 -1.04 -19.87 16 8 O -0.97 -18.55 17.50 -57.54 -1.01 -19.56 16 9 C -0.58 -10.42 6.01 37.16 0.22 -10.20 16 10 C -0.01 -0.18 4.05 -27.88 -0.11 -0.29 16 11 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 12 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 13 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 14 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 15 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 19 C -0.08 -0.57 4.46 -27.88 -0.12 -0.69 16 20 C -0.07 -0.55 4.00 -104.62 -0.42 -0.97 16 21 C -0.11 -0.89 7.90 -39.58 -0.31 -1.21 16 22 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 23 C -0.13 -0.92 10.05 -39.58 -0.40 -1.31 16 24 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 25 C -0.11 -0.88 7.88 -39.58 -0.31 -1.19 16 26 H 0.06 0.50 6.19 -51.93 -0.32 0.18 16 27 H 0.06 0.54 7.20 -51.93 -0.37 0.17 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.45 6.60 -51.93 -0.34 0.11 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.49 6.17 -51.93 -0.32 0.17 16 32 H 0.08 0.86 7.69 -51.93 -0.40 0.46 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.41 4.22 6.44 -34.47 -0.22 3.99 16 35 H 0.12 1.98 8.14 -51.92 -0.42 1.56 16 36 H 0.13 2.07 8.14 -51.93 -0.42 1.64 16 37 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 38 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 41 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 42 H 0.12 0.83 8.04 -52.48 -0.42 0.41 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 46 H 0.12 0.80 8.03 -52.49 -0.42 0.38 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -34.75 377.50 -10.51 -45.25 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.40 Total: 1.52 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: -2.21 Total: -32.48 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.72 Total: -39.58 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -2.05 Total: -39.43 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 16 Polarization: 42.79 SS G_CDS: -0.59 Total: 42.20 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.75 -10.51 -45.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117370481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.667 kcal (2) G-P(sol) polarization free energy of solvation -34.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds