Wall clock time and date at job start Tue Mar 31 2020 14:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46500 * 109.46998 * 299.99786 * 4 2 1 6 6 S 1.65600 * 120.00242 * 164.99948 * 5 4 2 7 7 O 1.42094 * 104.27575 * 181.07211 * 6 5 4 8 8 O 1.42097 * 104.27601 * 308.93158 * 6 5 4 9 9 C 1.81403 * 104.44440 * 65.00053 * 6 5 4 10 10 C 1.53002 * 109.46498 * 180.02562 * 9 6 5 11 11 C 1.50705 * 109.47025 * 179.97438 * 10 9 6 12 12 H 1.08003 * 119.99909 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00063 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99601 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00100 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47093 * 89.99740 * 15 13 11 17 17 H 1.48497 * 109.46982 * 209.99980 * 15 13 11 18 18 H 1.48497 * 109.47256 * 329.99900 * 15 13 11 19 19 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 20 20 C 1.50706 * 109.46953 * 60.00071 * 19 2 1 21 21 C 1.38231 * 119.99890 * 269.72761 * 20 19 2 22 22 C 1.38243 * 119.99932 * 179.76127 * 21 20 19 23 23 C 1.38235 * 119.99614 * 0.51210 * 22 21 20 24 24 C 1.38238 * 120.00119 * 359.74635 * 23 22 21 25 25 C 1.38234 * 120.00044 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 0.97004 * 119.99709 * 345.00122 * 5 4 2 35 35 H 1.09001 * 109.47372 * 299.99697 * 9 6 5 36 36 H 1.08995 * 109.47394 * 60.00732 * 9 6 5 37 37 H 1.09003 * 109.47400 * 299.99700 * 10 9 6 38 38 H 1.08997 * 109.47368 * 60.00308 * 10 9 6 39 39 H 0.97003 * 119.99682 * 180.02562 * 14 13 11 40 40 H 1.09000 * 109.47486 * 180.02562 * 19 2 1 41 41 H 1.09001 * 109.47362 * 300.00732 * 19 2 1 42 42 H 1.08006 * 120.00368 * 0.02562 * 21 20 19 43 43 H 1.07997 * 120.00078 * 180.23244 * 22 21 20 44 44 H 1.08001 * 120.00016 * 179.71719 * 23 22 21 45 45 H 1.08003 * 119.99866 * 179.97438 * 24 23 22 46 46 H 1.07997 * 119.99975 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.5517 -0.0308 2.4454 6 16 1.6256 -0.7783 3.9213 7 8 1.0524 0.1619 4.8194 8 8 1.0210 -2.0455 3.7029 9 6 3.4006 -0.9670 4.2446 10 6 3.6023 -1.6544 5.5965 11 6 5.0769 -1.8118 5.8649 12 1 5.7980 -1.4567 5.1435 13 6 5.5054 -2.4082 7.0318 14 7 6.7923 -2.5460 7.2657 15 14 4.2583 -3.0217 8.2798 16 1 3.9100 -4.4335 7.9785 17 1 4.8393 -2.9354 9.6436 18 1 3.0342 -2.1841 8.2093 19 6 2.0400 -0.7213 -1.2492 20 6 1.5377 -0.0108 -2.4797 21 6 0.3326 -0.3800 -3.0473 22 6 -0.1306 0.2750 -4.1732 23 6 0.6165 1.2920 -4.7375 24 6 1.8242 1.6575 -4.1729 25 6 2.2846 1.0064 -3.0438 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 1.1850 0.8644 2.3729 35 1 3.8507 -1.5732 3.4584 36 1 3.8732 0.0150 4.2618 37 1 3.1522 -1.0485 6.3830 38 1 3.1298 -2.6364 5.5789 39 1 7.0938 -2.9659 8.0865 40 1 3.1300 -0.7217 -1.2490 41 1 1.6766 -1.7489 -1.2493 42 1 -0.2493 -1.1773 -2.6088 43 1 -1.0740 -0.0109 -4.6145 44 1 0.2569 1.8006 -5.6197 45 1 2.4081 2.4518 -4.6141 46 1 3.2283 1.2918 -2.6030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117370481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:10 Heat of formation + Delta-G solvation = -94.441700 kcal Electronic energy + Delta-G solvation = -25425.412348 eV Core-core repulsion = 21826.238096 eV Total energy + Delta-G solvation = -3599.174252 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.69293 -38.66017 -38.09410 -37.00245 -35.87596 -34.75409 -33.45354 -31.75846 -31.73935 -28.11546 -27.98315 -27.81679 -26.38244 -23.27872 -23.16989 -22.27725 -20.34026 -19.96517 -19.36025 -18.41732 -17.54888 -17.28370 -17.03281 -16.38429 -16.24864 -16.12946 -15.76093 -15.62043 -15.27501 -15.13117 -14.80888 -14.34961 -14.23730 -13.81097 -13.70850 -13.69515 -13.43854 -13.20787 -13.11215 -13.05316 -12.94590 -12.87615 -12.72875 -12.54393 -12.23108 -12.16753 -11.93929 -11.76706 -11.74093 -11.70171 -11.60420 -11.37005 -11.24707 -10.83457 -10.29148 -9.70260 -9.47094 -8.35736 -6.41051 -0.66858 0.54035 0.58864 1.32514 1.34519 1.44501 1.86093 2.30231 2.79407 2.95771 2.98357 3.28505 3.65239 3.86697 3.89803 4.00328 4.12577 4.13082 4.15851 4.25391 4.37263 4.48684 4.54875 4.56499 4.60318 4.72859 4.77447 4.84117 4.91601 4.95346 5.00661 5.09154 5.09624 5.14172 5.17189 5.21731 5.26414 5.36124 5.46316 5.48347 5.48773 5.67139 5.71899 5.83890 6.14759 6.17942 6.21954 6.65135 7.23246 8.79714 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.025776 B = 0.002508 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.029985 B =11161.291003 C =11664.658742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C -0.148 4.148 4 C 0.111 3.889 5 N -1.106 6.106 6 S 2.624 3.376 7 O -0.997 6.997 8 O -0.991 6.991 9 C -0.588 4.588 10 C -0.018 4.018 11 C -0.525 4.525 12 H 0.050 0.950 13 C 0.012 3.988 14 N -0.940 5.940 15 Si 0.925 3.075 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.250 1.250 19 C -0.074 4.074 20 C -0.078 4.078 21 C -0.126 4.126 22 C -0.131 4.131 23 C -0.136 4.136 24 C -0.130 4.130 25 C -0.124 4.124 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.423 0.577 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.031 0.969 38 H 0.031 0.969 39 H 0.269 0.731 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.126 0.874 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.034 8.286 -24.888 29.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.056 4.056 3 C -0.205 4.205 4 C -0.015 4.015 5 N -0.869 5.869 6 S 2.719 3.281 7 O -0.987 6.987 8 O -0.981 6.981 9 C -0.720 4.720 10 C -0.057 4.057 11 C -0.564 4.564 12 H 0.069 0.931 13 C -0.186 4.186 14 N -0.580 5.580 15 Si 0.748 3.252 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.174 1.174 19 C -0.112 4.112 20 C -0.078 4.078 21 C -0.144 4.144 22 C -0.149 4.149 23 C -0.154 4.154 24 C -0.148 4.148 25 C -0.142 4.142 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.260 0.740 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.144 0.856 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.610 7.785 -24.232 28.862 hybrid contribution 0.459 0.096 0.591 0.754 sum -13.151 7.881 -23.641 28.177 Atomic orbital electron populations 1.21972 0.94319 1.02146 1.01948 1.20560 0.96171 0.96233 0.92590 1.21996 1.01750 0.94567 1.02178 1.21661 0.99764 0.96366 0.83672 1.55293 1.78969 1.30431 1.22158 1.04339 0.77646 0.73167 0.72914 1.93515 1.76959 1.63328 1.64891 1.93512 1.74801 1.44829 1.84951 1.30287 1.23649 1.11135 1.06917 1.19379 0.97932 0.96313 0.92124 1.21184 0.91051 1.39236 1.04937 0.93137 1.25881 0.97033 0.95607 1.00125 1.70014 1.15588 1.45195 1.27194 0.86025 0.80220 0.80213 0.78780 1.18513 1.20021 1.17370 1.20685 1.01680 0.98777 0.90021 1.19867 0.94939 0.96611 0.96405 1.21269 0.96169 1.00568 0.96429 1.21391 1.00496 0.96616 0.96384 1.21402 0.95339 0.97965 1.00709 1.21407 0.96742 1.00342 0.96345 1.21276 1.00402 0.96179 0.96308 0.91703 0.92942 0.92554 0.92500 0.91495 0.91759 0.90366 0.89691 0.73973 0.83991 0.84122 0.95119 0.95041 0.92170 0.89533 0.90145 0.85591 0.84991 0.84887 0.84863 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 7.73 71.98 0.56 -1.78 16 2 C -0.05 -0.79 0.56 -52.18 -0.03 -0.82 16 3 C -0.15 -2.01 7.71 71.98 0.55 -1.45 16 4 C 0.11 2.00 5.02 86.38 0.43 2.44 16 5 N -1.11 -23.88 5.22 -187.49 -0.98 -24.86 16 6 S 2.62 82.34 5.46 -56.49 -0.31 82.03 16 7 O -1.00 -37.31 18.08 -127.65 -2.31 -39.61 16 8 O -0.99 -36.52 17.50 -127.65 -2.23 -38.75 16 9 C -0.59 -20.18 6.01 71.98 0.43 -19.75 16 10 C -0.02 -0.85 4.05 29.85 0.12 -0.73 16 11 C -0.53 -29.37 9.66 25.60 0.25 -29.12 16 12 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 13 C 0.01 0.69 5.47 84.65 0.46 1.15 16 14 N -0.94 -57.59 13.96 21.45 0.30 -57.29 16 15 Si 0.92 43.77 27.47 68.60 1.88 45.65 16 16 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.25 -11.26 6.54 99.48 0.65 -10.60 16 19 C -0.07 -0.97 4.46 29.85 0.13 -0.84 16 20 C -0.08 -1.11 4.00 -19.86 -0.08 -1.19 16 21 C -0.13 -1.80 7.90 22.27 0.18 -1.63 16 22 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 23 C -0.14 -1.74 10.05 22.27 0.22 -1.52 16 24 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 25 C -0.12 -1.69 7.88 22.27 0.18 -1.51 16 26 H 0.06 0.98 6.19 -2.39 -0.01 0.97 16 27 H 0.05 0.89 7.20 -2.39 -0.02 0.87 16 28 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.06 0.77 6.60 -2.39 -0.02 0.76 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.87 6.17 -2.39 -0.01 0.86 16 32 H 0.08 1.51 7.69 -2.39 -0.02 1.49 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.42 7.73 6.44 -96.74 -0.62 7.11 16 35 H 0.14 4.29 8.14 -2.39 -0.02 4.27 16 36 H 0.14 4.38 8.14 -2.39 -0.02 4.36 16 37 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 38 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 39 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 41 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 42 H 0.13 1.59 8.04 -2.91 -0.02 1.56 16 43 H 0.13 1.30 8.06 -2.91 -0.02 1.28 16 44 H 0.13 1.19 8.06 -2.91 -0.02 1.17 16 45 H 0.13 1.25 8.06 -2.91 -0.02 1.23 16 46 H 0.13 1.47 8.03 -2.91 -0.02 1.45 16 Total: -1.00 -73.93 377.50 0.49 -73.44 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.28 Total: 19.12 kcal Atomic # 6 Polarization: -63.60 SS G_CDS: 3.86 Total: -59.74 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -0.68 Total: -82.14 kcal Atomic # 8 Polarization: -73.83 SS G_CDS: -4.54 Total: -78.37 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.65 kcal Atomic # 16 Polarization: 82.34 SS G_CDS: -0.31 Total: 82.03 kcal Total: -73.93 0.49 -73.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117370481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.998 kcal (2) G-P(sol) polarization free energy of solvation -73.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds