Wall clock time and date at job start Tue Mar 31 2020 14:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34896 * 117.00282 * 2 1 4 4 O 1.21634 * 119.99797 * 359.97438 * 3 2 1 5 5 C 1.46391 * 120.00050 * 179.97438 * 3 2 1 6 6 C 1.36746 * 125.46208 * 180.02562 * 5 3 2 7 7 C 1.37412 * 113.28768 * 179.76840 * 6 5 3 8 8 C 1.33857 * 115.11183 * 0.42303 * 7 6 5 9 9 C 1.50699 * 124.51944 * 179.85070 * 8 7 6 10 10 N 1.46904 * 109.47027 * 95.94378 * 9 8 7 11 11 C 1.46905 * 110.99870 * 163.77681 * 10 9 8 12 12 C 1.50695 * 109.46820 * 189.99760 * 11 10 9 13 13 H 1.08006 * 120.00183 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00002 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00015 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99755 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46763 * 90.00339 * 16 14 12 18 18 H 1.48496 * 109.46871 * 209.99845 * 16 14 12 19 19 H 1.48491 * 109.47178 * 330.00206 * 16 14 12 20 20 C 1.46897 * 110.99671 * 287.72887 * 10 9 8 21 21 C 1.52995 * 109.47431 * 293.25513 * 20 10 9 22 22 C 1.53001 * 109.47371 * 174.66390 * 21 20 10 23 23 C 1.52997 * 109.47277 * 64.99972 * 22 21 20 24 24 C 1.53000 * 109.47199 * 185.00095 * 22 21 20 25 25 S 1.70611 * 110.96084 * 359.58854 * 8 7 6 26 26 H 1.08997 * 109.46852 * 60.00647 * 1 2 3 27 27 H 1.09000 * 109.47128 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47236 * 300.00893 * 1 2 3 29 29 H 1.07999 * 123.35955 * 359.97290 * 6 5 3 30 30 H 1.08007 * 122.44432 * 180.26162 * 7 6 5 31 31 H 1.08998 * 109.47689 * 335.94108 * 9 8 7 32 32 H 1.09004 * 109.46974 * 215.93789 * 9 8 7 33 33 H 1.08993 * 109.47187 * 309.99869 * 11 10 9 34 34 H 1.09003 * 109.46912 * 70.00006 * 11 10 9 35 35 H 0.97002 * 119.99547 * 179.97438 * 15 14 12 36 36 H 1.09001 * 109.47050 * 53.25746 * 20 10 9 37 37 H 1.09007 * 109.47225 * 173.25670 * 20 10 9 38 38 H 1.08999 * 109.47560 * 294.66781 * 21 20 10 39 39 H 1.09001 * 109.46939 * 54.66284 * 21 20 10 40 40 H 1.09004 * 109.47082 * 304.99809 * 22 21 20 41 41 H 1.08998 * 109.47071 * 300.00495 * 23 22 21 42 42 H 1.09003 * 109.46694 * 60.00059 * 23 22 21 43 43 H 1.08997 * 109.47073 * 179.97438 * 23 22 21 44 44 H 1.09010 * 109.46940 * 60.00163 * 24 22 21 45 45 H 1.08997 * 109.46975 * 179.97438 * 24 22 21 46 46 H 1.08991 * 109.47437 * 299.99916 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4021 2.2220 -0.0005 5 6 3.5264 1.2785 0.0006 6 6 4.2604 2.4322 0.0011 7 6 5.6170 2.2131 0.0067 8 6 5.9845 0.9260 0.0016 9 6 7.4129 0.4457 0.0029 10 7 7.8279 0.1473 1.3801 11 6 9.0477 -0.6712 1.3967 12 6 9.3048 -1.1611 2.7984 13 1 8.6299 -0.8910 3.5972 14 6 10.4023 -1.9532 3.0615 15 7 10.6264 -2.3811 4.2847 16 14 11.5700 -2.4197 1.6801 17 1 12.6433 -1.3990 1.5734 18 1 12.1743 -3.7449 1.9692 19 1 10.8208 -2.4859 0.3998 20 6 8.0122 1.3825 2.1536 21 6 9.2021 2.1633 1.5920 22 6 9.3127 3.5101 2.3095 23 6 9.6422 3.2764 3.7851 24 6 10.4232 4.3418 1.6645 25 16 4.6201 -0.0984 0.0008 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 3.8181 3.4175 0.0008 30 1 6.3343 3.0205 0.0120 31 1 8.0574 1.2212 -0.4109 32 1 7.4936 -0.4560 -0.6043 33 1 8.9215 -1.5249 0.7309 34 1 9.8930 -0.0704 1.0610 35 1 11.3983 -2.9387 4.4697 36 1 7.1117 1.9926 2.0838 37 1 8.2018 1.1326 3.1976 38 1 10.1174 1.5924 1.7477 39 1 9.0556 2.3309 0.5250 40 1 8.3656 4.0437 2.2287 41 1 8.8511 2.6838 4.2446 42 1 10.5893 2.7428 3.8658 43 1 9.7215 4.2359 4.2961 44 1 10.1884 4.5084 0.6131 45 1 10.5017 5.3015 2.1753 46 1 11.3702 3.8084 1.7452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119416097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:40 Heat of formation + Delta-G solvation = -59.255593 kcal Electronic energy + Delta-G solvation = -25499.263803 eV Core-core repulsion = 21901.615336 eV Total energy + Delta-G solvation = -3597.648468 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.38187 -38.72970 -37.36705 -36.35884 -35.19478 -32.63682 -31.02356 -28.83697 -28.60566 -27.18221 -26.85494 -25.50382 -23.75822 -22.53834 -22.04693 -20.26065 -19.36265 -19.18570 -18.21482 -16.94807 -16.63666 -16.48941 -16.04924 -15.25352 -15.03957 -14.93980 -14.48134 -14.14533 -13.66537 -13.58953 -13.36521 -13.15266 -13.12002 -12.69425 -12.49649 -12.34034 -12.25480 -12.18554 -11.93042 -11.72464 -11.43710 -11.28704 -10.98545 -10.92913 -10.88085 -10.74487 -10.63287 -10.50650 -10.35516 -10.29160 -9.91430 -9.86985 -9.33030 -8.74290 -8.60817 -8.49019 -7.45238 -6.08740 -4.06042 0.40834 1.52197 2.03898 2.22019 2.55292 2.93026 3.23372 3.32132 3.32609 4.37351 4.65525 4.77281 4.90593 4.96512 4.98104 5.12303 5.17372 5.23578 5.24116 5.28817 5.31016 5.33417 5.58568 5.71904 5.78949 5.85785 5.92960 5.94963 6.02221 6.04923 6.10393 6.12221 6.21708 6.23582 6.35400 6.40565 6.43855 6.53193 6.65968 6.78927 6.93687 6.97628 7.52033 7.57987 7.78476 7.92840 8.59539 9.00343 9.52484 11.04279 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012190 B = 0.003541 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.437645 B = 7906.081280 C = 9395.193467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.356 6.356 3 C 0.545 3.455 4 O -0.509 6.509 5 C -0.294 4.294 6 C -0.033 4.033 7 C -0.169 4.169 8 C -0.154 4.154 9 C 0.103 3.897 10 N -0.519 5.519 11 C 0.159 3.841 12 C -0.505 4.505 13 H 0.081 0.919 14 C 0.071 3.929 15 N -0.898 5.898 16 Si 0.871 3.129 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.267 1.267 20 C 0.063 3.937 21 C -0.152 4.152 22 C -0.089 4.089 23 C -0.147 4.147 24 C -0.146 4.146 25 S 0.280 5.720 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.026 0.974 34 H -0.007 1.007 35 H 0.263 0.737 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.044 0.956 44 H 0.048 0.952 45 H 0.049 0.951 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.703 8.931 -9.983 17.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.273 6.273 3 C 0.390 3.610 4 O -0.399 6.399 5 C -0.413 4.413 6 C -0.068 4.068 7 C -0.199 4.199 8 C -0.276 4.276 9 C -0.026 4.026 10 N -0.242 5.242 11 C 0.033 3.967 12 C -0.543 4.543 13 H 0.099 0.901 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.698 3.302 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.192 1.192 20 C -0.065 4.065 21 C -0.191 4.191 22 C -0.108 4.108 23 C -0.204 4.204 24 C -0.203 4.203 25 S 0.550 5.450 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.167 0.833 30 H 0.161 0.839 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.044 0.956 34 H 0.011 0.989 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.369 7.185 -9.648 17.255 hybrid contribution 1.488 1.839 -0.974 2.559 sum -10.881 9.025 -10.623 17.683 Atomic orbital electron populations 1.23274 0.75798 1.03824 1.02594 1.86607 1.23697 1.32341 1.84655 1.19695 0.87249 0.81557 0.72482 1.90864 1.66160 1.35909 1.46982 1.23474 0.93789 0.99690 1.24333 1.20645 0.92576 0.98111 0.95457 1.19896 0.95402 0.96574 1.08022 1.24603 1.01995 0.97888 1.03088 1.20740 0.87909 1.00335 0.93643 1.62265 1.36396 1.17303 1.08200 1.20283 0.85515 0.91766 0.99112 1.20947 1.09964 1.30637 0.92766 0.90103 1.24862 0.97402 0.95681 0.95161 1.69886 1.28872 1.35800 1.19164 0.86938 0.81705 0.78252 0.83302 1.20381 1.21163 1.19213 1.22156 0.95366 0.89178 0.99778 1.22280 1.01955 0.96014 0.98810 1.21011 0.98150 0.95919 0.95727 1.21852 1.02596 1.00676 0.95277 1.21846 0.99142 0.99396 0.99934 1.83333 0.91701 1.05649 1.64285 0.91862 0.87870 0.91765 0.83342 0.83905 0.92614 0.89996 0.95564 0.98906 0.92664 0.92436 0.89240 0.90570 0.93072 0.91943 0.92014 0.92372 0.93674 0.93286 0.93219 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.40 16 2 O -0.36 -4.37 10.42 -41.03 -0.43 -4.79 16 3 C 0.55 7.61 7.92 34.01 0.27 7.88 16 4 O -0.51 -7.95 16.64 -19.37 -0.32 -8.27 16 5 C -0.29 -4.00 6.45 -36.84 -0.24 -4.23 16 6 C -0.03 -0.42 10.01 -40.42 -0.40 -0.82 16 7 C -0.17 -2.12 8.89 -41.42 -0.37 -2.49 16 8 C -0.15 -2.15 5.25 -35.85 -0.19 -2.33 16 9 C 0.10 1.59 5.31 -4.97 -0.03 1.56 16 10 N -0.52 -9.83 4.65 -237.52 -1.10 -10.93 16 11 C 0.16 3.55 3.48 -4.98 -0.02 3.53 16 12 C -0.50 -13.50 9.11 -34.44 -0.31 -13.82 16 13 H 0.08 2.39 7.34 -52.48 -0.39 2.00 16 14 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 15 N -0.90 -26.65 13.96 55.43 0.77 -25.88 16 16 Si 0.87 20.66 27.47 -169.99 -4.67 15.99 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 20 C 0.06 1.10 4.62 -3.83 -0.02 1.09 16 21 C -0.15 -2.39 3.94 -26.73 -0.11 -2.49 16 22 C -0.09 -1.21 2.92 -90.62 -0.26 -1.47 16 23 C -0.15 -2.12 8.95 37.16 0.33 -1.78 16 24 C -0.15 -1.76 9.19 37.16 0.34 -1.42 16 25 S 0.28 3.76 22.87 -107.50 -2.46 1.31 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 31 H 0.06 0.80 5.96 -51.93 -0.31 0.49 16 32 H 0.08 1.23 7.80 -51.93 -0.41 0.82 16 33 H 0.03 0.60 6.92 -51.93 -0.36 0.24 16 34 H -0.01 -0.15 5.47 -51.93 -0.28 -0.43 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.06 0.92 6.49 -51.93 -0.34 0.58 16 37 H 0.09 1.80 5.63 -51.93 -0.29 1.51 16 38 H 0.08 1.41 6.54 -51.93 -0.34 1.07 16 39 H 0.05 0.74 6.16 -51.93 -0.32 0.43 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.95 6.69 -51.93 -0.35 0.60 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 381.54 15.07 5.75 5.75 Total: -1.00 -30.30 381.54 -9.68 -39.98 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.20 Total: 0.40 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.03 Total: -13.55 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.33 Total: -36.81 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.75 Total: -13.06 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -2.46 Total: 1.31 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.30 -9.68 -39.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119416097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.272 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds