Wall clock time and date at job start Tue Mar 31 2020 14:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50708 * 109.46814 * 2 1 4 4 C 1.38255 * 119.99962 * 265.00000 * 3 2 1 5 5 C 1.38213 * 120.00053 * 179.72178 * 4 3 2 6 6 C 1.38252 * 119.99821 * 0.27778 * 5 4 3 7 7 C 1.38216 * 120.00064 * 359.97438 * 6 5 4 8 8 C 1.38213 * 119.99802 * 85.18626 * 3 2 1 9 9 C 1.50694 * 120.00321 * 0.04931 * 8 3 2 10 10 N 1.46496 * 109.47633 * 80.16132 * 9 8 3 11 11 C 1.34774 * 120.00584 * 179.97438 * 10 9 8 12 12 O 1.21593 * 119.99614 * 0.02562 * 11 10 9 13 13 C 1.47531 * 120.00137 * 180.02562 * 11 10 9 14 14 C 1.39661 * 120.20064 * 0.02562 * 13 11 10 15 15 C 1.37830 * 119.92133 * 179.97438 * 14 13 11 16 16 C 1.38575 * 120.31978 * 0.02562 * 15 14 13 17 17 C 1.38014 * 120.40644 * 359.97438 * 16 15 14 18 18 C 1.38837 * 120.07343 * 359.73920 * 17 16 15 19 19 O 1.35518 * 120.16783 * 180.27867 * 18 17 16 20 20 C 1.34814 * 116.99585 * 354.39355 * 19 18 17 21 21 H 1.08005 * 120.00463 * 5.05832 * 20 19 18 22 22 C 1.38694 * 119.99886 * 185.05348 * 20 19 18 23 23 N 1.31528 * 120.00041 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00290 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47179 * 89.99557 * 24 22 20 26 26 H 1.48502 * 109.47361 * 210.00014 * 24 22 20 27 27 H 1.48501 * 109.46822 * 329.99792 * 24 22 20 28 28 H 1.09004 * 109.46569 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47331 * 299.99559 * 1 2 3 30 30 H 1.08997 * 109.47385 * 60.00300 * 1 2 3 31 31 H 1.08998 * 109.47331 * 240.00441 * 2 1 3 32 32 H 1.08997 * 109.47385 * 119.99700 * 2 1 3 33 33 H 1.08002 * 119.99987 * 359.97438 * 4 3 2 34 34 H 1.08000 * 120.00001 * 180.25833 * 5 4 3 35 35 H 1.07999 * 119.99956 * 179.97438 * 6 5 4 36 36 H 1.08002 * 120.00012 * 179.97438 * 7 6 5 37 37 H 1.09007 * 109.47025 * 200.16565 * 9 8 3 38 38 H 1.09007 * 109.47055 * 320.16192 * 9 8 3 39 39 H 0.97004 * 119.99926 * 0.02562 * 10 9 8 40 40 H 1.08003 * 120.03782 * 359.95116 * 14 13 11 41 41 H 1.08001 * 119.83683 * 179.97438 * 15 14 13 42 42 H 1.08001 * 119.79238 * 179.97438 * 16 15 14 43 43 H 1.08003 * 119.96811 * 180.02562 * 17 16 15 44 44 H 0.97006 * 119.99662 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3611 2.0379 -1.1928 5 6 2.8163 3.3429 -1.1933 6 6 2.9483 4.0294 -0.0006 7 6 2.6245 3.4109 1.1923 8 6 2.1679 2.1059 1.1928 9 6 1.8146 1.4317 2.4933 10 7 2.9203 0.5661 2.9109 11 6 2.8274 -0.1417 4.0540 12 8 1.8256 -0.0623 4.7386 13 6 3.9412 -1.0130 4.4748 14 6 5.0940 -1.1070 3.6920 15 6 6.1312 -1.9223 4.0908 16 6 6.0364 -2.6508 5.2657 17 6 4.9034 -2.5680 6.0495 18 6 3.8510 -1.7473 5.6666 19 8 2.7400 -1.6602 6.4376 20 6 2.6687 -2.4828 7.5034 21 1 3.5090 -3.1120 7.7572 22 6 1.5161 -2.5211 8.2739 23 7 1.4466 -3.3232 9.3139 24 14 0.0623 -1.4334 7.8346 25 1 -0.8354 -2.1601 6.9012 26 1 -0.6854 -1.0840 9.0692 27 1 0.5520 -0.1914 7.1843 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.2584 1.5014 -2.1245 34 1 3.0691 3.8262 -2.1254 35 1 3.3043 5.0490 -0.0009 36 1 2.7280 3.9471 2.1241 37 1 1.6364 2.1879 3.2579 38 1 0.9144 0.8318 2.3588 39 1 3.7196 0.5030 2.3650 40 1 5.1723 -0.5417 2.7750 41 1 7.0219 -1.9942 3.4841 42 1 6.8541 -3.2874 5.5699 43 1 4.8372 -3.1386 6.9641 44 1 0.6406 -3.3497 9.8530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122526936.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:33 Heat of formation + Delta-G solvation = -17.009525 kcal Electronic energy + Delta-G solvation = -26876.060991 eV Core-core repulsion = 23144.800499 eV Total energy + Delta-G solvation = -3731.260492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.18952 -39.53927 -38.12553 -36.52011 -34.89921 -33.96909 -32.44857 -31.68542 -30.35058 -29.52847 -29.19686 -26.35342 -25.22628 -23.98441 -23.07976 -22.03989 -21.27202 -20.62530 -20.09390 -17.97943 -17.88714 -16.68006 -16.28692 -16.13465 -15.63743 -15.16991 -14.68146 -14.51615 -14.32807 -14.09053 -13.97152 -13.72994 -13.70776 -13.56897 -13.25642 -13.10378 -12.72095 -12.37761 -12.34632 -12.16360 -12.14171 -11.94571 -11.40072 -11.39398 -11.26706 -10.97017 -10.88240 -10.79450 -10.71574 -10.04681 -9.64673 -9.25952 -8.97548 -8.88832 -8.78300 -8.72225 -8.37554 -7.47723 -6.46918 -4.11999 1.05981 1.17887 1.57719 2.19012 3.31819 3.36721 3.38337 3.57555 3.66798 3.85461 4.35920 4.50956 4.51991 4.57379 4.71549 4.74171 4.80856 4.99398 5.09170 5.14363 5.24234 5.29390 5.33729 5.38485 5.41084 5.55865 5.62136 5.71990 5.73405 5.84007 5.84866 5.97004 5.98330 6.04075 6.15131 6.28687 6.28852 6.37837 6.49740 6.55214 6.74213 6.79541 6.83765 7.01136 7.14922 7.48159 7.67866 7.94580 7.96063 8.85460 8.89809 9.51948 10.58199 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013523 B = 0.003616 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.059023 B = 7742.115874 C = 8903.002898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.061 4.061 4 C -0.122 4.122 5 C -0.114 4.114 6 C -0.129 4.129 7 C -0.098 4.098 8 C -0.101 4.101 9 C 0.161 3.839 10 N -0.736 5.736 11 C 0.561 3.439 12 O -0.518 6.518 13 C -0.226 4.226 14 C -0.040 4.040 15 C -0.221 4.221 16 C -0.051 4.051 17 C -0.227 4.227 18 C 0.202 3.798 19 O -0.165 6.165 20 C -0.396 4.396 21 H 0.108 0.892 22 C 0.072 3.928 23 N -0.870 5.870 24 Si 0.900 3.100 25 H -0.274 1.274 26 H -0.287 1.287 27 H -0.238 1.238 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.395 0.605 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.138 0.862 44 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.272 10.146 -20.454 23.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 C -0.062 4.062 4 C -0.140 4.140 5 C -0.132 4.132 6 C -0.147 4.147 7 C -0.117 4.117 8 C -0.101 4.101 9 C 0.038 3.962 10 N -0.391 5.391 11 C 0.351 3.649 12 O -0.394 6.394 13 C -0.231 4.231 14 C -0.059 4.059 15 C -0.240 4.240 16 C -0.069 4.069 17 C -0.246 4.246 18 C 0.144 3.856 19 O -0.065 6.065 20 C -0.471 4.471 21 H 0.125 0.875 22 C -0.134 4.134 23 N -0.506 5.506 24 Si 0.725 3.275 25 H -0.199 1.199 26 H -0.213 1.213 27 H -0.161 1.161 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.230 0.770 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.156 0.844 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.133 10.258 -19.710 22.440 hybrid contribution -0.049 0.280 -0.316 0.425 sum 3.084 10.538 -20.026 22.839 Atomic orbital electron populations 1.21744 0.94496 1.02099 1.02069 1.20661 0.96535 0.92451 1.03500 1.19860 0.97563 0.96261 0.92488 1.21036 1.00318 0.95211 0.97431 1.21155 0.99297 0.94699 0.98055 1.21123 1.01010 1.00022 0.92506 1.21136 0.97774 0.94331 0.98413 1.19841 1.01231 0.94677 0.94377 1.20119 0.90641 0.93486 0.91977 1.45931 1.20117 1.47645 1.25413 1.18213 0.87262 0.79445 0.80010 1.90860 1.31318 1.64345 1.52827 1.18845 0.97390 1.08692 0.98149 1.20763 0.91974 0.96281 0.96897 1.20538 0.99869 1.03897 0.99703 1.20962 0.96298 0.96152 0.93514 1.21285 0.94674 1.05117 1.03532 1.19022 0.86912 0.91322 0.88366 1.83781 1.34270 1.53517 1.34978 1.20927 1.03732 1.19582 1.02893 0.87452 1.24494 0.98248 0.96360 0.94273 1.69646 1.29607 1.35592 1.15730 0.86198 0.80704 0.83044 0.77553 1.19932 1.21266 1.16124 0.92126 0.92252 0.92746 0.91035 0.90002 0.86079 0.86170 0.86066 0.85774 0.91082 0.90547 0.77033 0.86920 0.87029 0.86842 0.84425 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.75 37.16 0.36 -1.08 16 2 C -0.09 -0.94 5.40 -27.88 -0.15 -1.09 16 3 C -0.06 -0.63 5.13 -104.62 -0.54 -1.16 16 4 C -0.12 -1.09 9.68 -39.58 -0.38 -1.47 16 5 C -0.11 -0.95 10.05 -39.59 -0.40 -1.35 16 6 C -0.13 -1.13 10.05 -39.58 -0.40 -1.52 16 7 C -0.10 -0.99 9.67 -39.58 -0.38 -1.37 16 8 C -0.10 -1.12 5.25 -104.63 -0.55 -1.67 16 9 C 0.16 2.19 4.95 -5.20 -0.03 2.16 16 10 N -0.74 -10.96 4.84 -62.53 -0.30 -11.27 16 11 C 0.56 11.28 7.76 -12.47 -0.10 11.19 16 12 O -0.52 -12.80 15.17 -16.57 -0.25 -13.06 16 13 C -0.23 -4.58 5.89 -104.81 -0.62 -5.19 16 14 C -0.04 -0.65 9.53 -39.20 -0.37 -1.02 16 15 C -0.22 -3.43 10.03 -39.61 -0.40 -3.83 16 16 C -0.05 -0.87 10.03 -39.54 -0.40 -1.26 16 17 C -0.23 -4.79 9.16 -39.44 -0.36 -5.15 16 18 C 0.20 4.76 6.66 -38.59 -0.26 4.50 16 19 O -0.17 -4.55 6.67 -21.05 -0.14 -4.69 16 20 C -0.40 -11.35 9.95 30.90 0.31 -11.05 16 21 H 0.11 3.06 5.44 -52.48 -0.29 2.77 16 22 C 0.07 2.07 5.49 -17.51 -0.10 1.97 16 23 N -0.87 -25.35 13.96 55.48 0.77 -24.57 16 24 Si 0.90 23.26 28.62 -169.99 -4.86 18.40 16 25 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.24 -6.49 7.11 56.52 0.40 -6.09 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.64 6.74 -51.93 -0.35 0.29 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 32 H 0.08 0.95 6.59 -51.93 -0.34 0.61 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.12 1.15 8.04 -52.49 -0.42 0.73 16 37 H 0.07 1.02 8.00 -51.92 -0.42 0.60 16 38 H 0.08 1.10 5.86 -51.93 -0.30 0.80 16 39 H 0.39 4.91 6.49 -40.82 -0.27 4.65 16 40 H 0.11 1.39 6.40 -52.48 -0.34 1.06 16 41 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.14 3.01 5.64 -52.48 -0.30 2.72 16 44 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 367.15 15.07 5.53 5.53 Total: -1.00 -32.73 367.15 -9.53 -42.26 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.53 Total: 5.80 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -4.75 Total: -18.40 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.47 Total: -35.84 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.39 Total: -17.75 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.86 Total: 18.40 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.73 -9.53 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122526936.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.252 kcal (2) G-P(sol) polarization free energy of solvation -32.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds