Wall clock time and date at job start Tue Mar 31 2020 14:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50708 * 109.46814 * 2 1 4 4 C 1.38255 * 119.99962 * 265.00000 * 3 2 1 5 5 C 1.38213 * 120.00053 * 179.72178 * 4 3 2 6 6 C 1.38252 * 119.99821 * 0.27778 * 5 4 3 7 7 C 1.38216 * 120.00064 * 359.97438 * 6 5 4 8 8 C 1.38213 * 119.99802 * 85.18626 * 3 2 1 9 9 C 1.50694 * 120.00321 * 0.04931 * 8 3 2 10 10 N 1.46496 * 109.47633 * 80.16132 * 9 8 3 11 11 C 1.34774 * 120.00584 * 179.97438 * 10 9 8 12 12 O 1.21593 * 119.99614 * 0.02562 * 11 10 9 13 13 C 1.47531 * 120.00137 * 180.02562 * 11 10 9 14 14 C 1.39661 * 120.20064 * 0.02562 * 13 11 10 15 15 C 1.37830 * 119.92133 * 179.97438 * 14 13 11 16 16 C 1.38575 * 120.31978 * 0.02562 * 15 14 13 17 17 C 1.38014 * 120.40644 * 359.97438 * 16 15 14 18 18 C 1.38837 * 120.07343 * 359.73920 * 17 16 15 19 19 O 1.35518 * 120.16783 * 180.27867 * 18 17 16 20 20 C 1.34814 * 116.99585 * 354.39355 * 19 18 17 21 21 H 1.08005 * 120.00463 * 5.05832 * 20 19 18 22 22 C 1.38694 * 119.99886 * 185.05348 * 20 19 18 23 23 N 1.31528 * 120.00041 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00290 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47179 * 89.99557 * 24 22 20 26 26 H 1.48502 * 109.47361 * 210.00014 * 24 22 20 27 27 H 1.48501 * 109.46822 * 329.99792 * 24 22 20 28 28 H 1.09004 * 109.46569 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47331 * 299.99559 * 1 2 3 30 30 H 1.08997 * 109.47385 * 60.00300 * 1 2 3 31 31 H 1.08998 * 109.47331 * 240.00441 * 2 1 3 32 32 H 1.08997 * 109.47385 * 119.99700 * 2 1 3 33 33 H 1.08002 * 119.99987 * 359.97438 * 4 3 2 34 34 H 1.08000 * 120.00001 * 180.25833 * 5 4 3 35 35 H 1.07999 * 119.99956 * 179.97438 * 6 5 4 36 36 H 1.08002 * 120.00012 * 179.97438 * 7 6 5 37 37 H 1.09007 * 109.47025 * 200.16565 * 9 8 3 38 38 H 1.09007 * 109.47055 * 320.16192 * 9 8 3 39 39 H 0.97004 * 119.99926 * 0.02562 * 10 9 8 40 40 H 1.08003 * 120.03782 * 359.95116 * 14 13 11 41 41 H 1.08001 * 119.83683 * 179.97438 * 15 14 13 42 42 H 1.08001 * 119.79238 * 179.97438 * 16 15 14 43 43 H 1.08003 * 119.96811 * 180.02562 * 17 16 15 44 44 H 0.97006 * 119.99662 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3611 2.0379 -1.1928 5 6 2.8163 3.3429 -1.1933 6 6 2.9483 4.0294 -0.0006 7 6 2.6245 3.4109 1.1923 8 6 2.1679 2.1059 1.1928 9 6 1.8146 1.4317 2.4933 10 7 2.9203 0.5661 2.9109 11 6 2.8274 -0.1417 4.0540 12 8 1.8256 -0.0623 4.7386 13 6 3.9412 -1.0130 4.4748 14 6 5.0940 -1.1070 3.6920 15 6 6.1312 -1.9223 4.0908 16 6 6.0364 -2.6508 5.2657 17 6 4.9034 -2.5680 6.0495 18 6 3.8510 -1.7473 5.6666 19 8 2.7400 -1.6602 6.4376 20 6 2.6687 -2.4828 7.5034 21 1 3.5090 -3.1120 7.7572 22 6 1.5161 -2.5211 8.2739 23 7 1.4466 -3.3232 9.3139 24 14 0.0623 -1.4334 7.8346 25 1 -0.8354 -2.1601 6.9012 26 1 -0.6854 -1.0840 9.0692 27 1 0.5520 -0.1914 7.1843 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.2584 1.5014 -2.1245 34 1 3.0691 3.8262 -2.1254 35 1 3.3043 5.0490 -0.0009 36 1 2.7280 3.9471 2.1241 37 1 1.6364 2.1879 3.2579 38 1 0.9144 0.8318 2.3588 39 1 3.7196 0.5030 2.3650 40 1 5.1723 -0.5417 2.7750 41 1 7.0219 -1.9942 3.4841 42 1 6.8541 -3.2874 5.5699 43 1 4.8372 -3.1386 6.9641 44 1 0.6406 -3.3497 9.8530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122526936.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:32 Heat of formation + Delta-G solvation = -35.597247 kcal Electronic energy + Delta-G solvation = -26876.867015 eV Core-core repulsion = 23144.800499 eV Total energy + Delta-G solvation = -3732.066516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.50164 -40.72955 -39.68081 -38.16152 -36.05424 -34.90694 -34.51940 -32.87904 -31.58096 -30.80257 -30.30257 -27.62667 -27.01995 -24.86012 -24.41307 -23.07741 -22.66739 -21.64751 -21.42758 -19.81218 -19.52165 -18.10920 -17.42402 -17.05832 -16.94986 -16.39529 -16.10982 -16.05990 -15.70057 -15.62592 -15.44115 -15.30578 -14.74478 -14.51908 -14.35255 -14.21847 -14.04918 -13.95522 -13.86900 -13.62012 -13.12312 -12.93844 -12.84890 -12.70048 -12.59414 -12.40273 -12.16093 -12.03246 -11.73251 -11.62346 -11.54265 -10.97626 -10.80902 -10.17977 -9.84029 -9.77128 -9.57439 -9.15423 -8.58589 -6.27207 0.04405 0.30223 0.47521 0.64114 1.23724 1.29100 1.57330 2.01355 2.25041 2.29059 2.75250 2.90993 3.01628 3.16007 3.62715 3.82880 3.91227 3.96488 4.01598 4.08559 4.25119 4.32373 4.34230 4.45746 4.47318 4.52387 4.60829 4.62562 4.71230 4.73607 4.81134 4.99683 5.05515 5.07411 5.08677 5.21078 5.28104 5.33875 5.42010 5.47144 5.57407 5.61113 5.61722 5.68896 5.73369 5.83124 6.09251 6.14828 6.60517 6.78626 7.36135 7.58495 8.51930 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013523 B = 0.003616 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.059023 B = 7742.115874 C = 8903.002898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.068 4.068 4 C -0.123 4.123 5 C -0.109 4.109 6 C -0.129 4.129 7 C -0.108 4.108 8 C -0.114 4.114 9 C 0.164 3.836 10 N -0.708 5.708 11 C 0.555 3.445 12 O -0.572 6.572 13 C -0.233 4.233 14 C -0.030 4.030 15 C -0.188 4.188 16 C -0.041 4.041 17 C -0.250 4.250 18 C 0.162 3.838 19 O -0.209 6.209 20 C -0.403 4.403 21 H 0.093 0.907 22 C 0.027 3.973 23 N -0.911 5.911 24 Si 0.955 3.045 25 H -0.276 1.276 26 H -0.265 1.265 27 H -0.267 1.267 28 H 0.060 0.940 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.125 0.875 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.410 0.590 40 H 0.161 0.839 41 H 0.167 0.833 42 H 0.152 0.848 43 H 0.116 0.884 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.186 11.633 -25.212 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 C -0.068 4.068 4 C -0.141 4.141 5 C -0.127 4.127 6 C -0.147 4.147 7 C -0.127 4.127 8 C -0.114 4.114 9 C 0.041 3.959 10 N -0.363 5.363 11 C 0.345 3.655 12 O -0.452 6.452 13 C -0.237 4.237 14 C -0.049 4.049 15 C -0.207 4.207 16 C -0.059 4.059 17 C -0.269 4.269 18 C 0.109 3.891 19 O -0.113 6.113 20 C -0.479 4.479 21 H 0.110 0.890 22 C -0.174 4.174 23 N -0.551 5.551 24 Si 0.779 3.221 25 H -0.202 1.202 26 H -0.190 1.190 27 H -0.191 1.191 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.143 0.857 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.248 0.752 40 H 0.178 0.822 41 H 0.184 0.816 42 H 0.170 0.830 43 H 0.134 0.866 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.108 11.764 -24.542 27.893 hybrid contribution -0.583 -0.077 0.729 0.937 sum 5.525 11.688 -23.812 27.095 Atomic orbital electron populations 1.21738 0.94766 1.02051 1.01826 1.20635 0.96333 0.92611 1.03353 1.19905 0.97913 0.96267 0.92728 1.21302 0.99558 0.95660 0.97540 1.21530 0.97771 0.94389 0.98992 1.21407 1.00280 1.01017 0.92016 1.21248 0.98045 0.93973 0.99392 1.19603 1.03335 0.95302 0.93181 1.20093 0.89763 0.92733 0.93311 1.45699 1.20938 1.46041 1.23598 1.18402 0.86587 0.79679 0.80782 1.90843 1.33342 1.66203 1.54856 1.19262 0.99026 1.07892 0.97549 1.21309 0.90057 0.96019 0.97499 1.21225 1.00745 1.00339 0.98358 1.21443 0.95385 0.95961 0.93156 1.21335 0.96081 1.05482 1.04024 1.19755 0.86802 0.92968 0.89555 1.83771 1.36647 1.55033 1.35884 1.20904 1.03390 1.19827 1.03752 0.89001 1.25027 1.00004 0.97648 0.94674 1.69687 1.30542 1.37736 1.17155 0.85427 0.78728 0.80426 0.77542 1.20177 1.18976 1.19150 0.92127 0.94103 0.91321 0.89082 0.92117 0.83949 0.83408 0.83917 0.85726 0.92391 0.91880 0.75189 0.82194 0.81595 0.83050 0.86641 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.75 71.98 0.70 -2.06 16 2 C -0.09 -1.68 5.40 29.85 0.16 -1.52 16 3 C -0.07 -1.23 5.13 -19.86 -0.10 -1.33 16 4 C -0.12 -1.72 9.68 22.27 0.22 -1.50 16 5 C -0.11 -1.34 10.05 22.27 0.22 -1.12 16 6 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 7 C -0.11 -1.97 9.67 22.27 0.22 -1.76 16 8 C -0.11 -2.38 5.25 -19.87 -0.10 -2.48 16 9 C 0.16 4.52 4.95 85.63 0.42 4.95 16 10 N -0.71 -20.60 4.84 -470.01 -2.27 -22.88 16 11 C 0.56 22.78 7.76 86.69 0.67 23.45 16 12 O -0.57 -30.00 15.17 16.89 0.26 -29.75 16 13 C -0.23 -9.30 5.89 -19.99 -0.12 -9.42 16 14 C -0.03 -0.84 9.53 22.52 0.21 -0.63 16 15 C -0.19 -4.72 10.03 22.25 0.22 -4.50 16 16 C -0.04 -1.27 10.03 22.30 0.22 -1.05 16 17 C -0.25 -10.71 9.16 22.36 0.20 -10.51 16 18 C 0.16 7.95 6.66 22.91 0.15 8.10 16 19 O -0.21 -12.33 6.67 0.86 0.01 -12.33 16 20 C -0.40 -24.83 9.95 67.93 0.68 -24.16 16 21 H 0.09 5.71 5.44 -2.91 -0.02 5.70 16 22 C 0.03 1.64 5.49 84.85 0.47 2.11 16 23 N -0.91 -56.20 13.96 21.62 0.30 -55.90 16 24 Si 0.95 51.47 28.62 68.60 1.96 53.43 16 25 H -0.28 -14.68 7.11 99.48 0.71 -13.98 16 26 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 27 H -0.27 -15.50 7.11 99.48 0.71 -14.79 16 28 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.04 0.91 6.74 -2.39 -0.02 0.89 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.28 8.05 -2.39 -0.02 1.27 16 32 H 0.06 1.35 6.59 -2.39 -0.02 1.34 16 33 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 36 H 0.12 2.18 8.04 -2.91 -0.02 2.15 16 37 H 0.06 1.74 8.00 -2.38 -0.02 1.73 16 38 H 0.06 1.92 5.86 -2.38 -0.01 1.91 16 39 H 0.41 9.07 6.49 -92.71 -0.60 8.47 16 40 H 0.16 2.93 6.40 -2.91 -0.02 2.91 16 41 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 42 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 43 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 44 H 0.29 16.23 8.31 -92.70 -0.77 15.46 16 Total: -1.00 -79.76 367.15 5.36 -74.40 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.43 Total: 18.04 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 4.68 Total: -25.01 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -1.97 Total: -78.78 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: 0.26 Total: -42.07 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 1.96 Total: 53.43 kcal Total: -79.76 5.36 -74.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122526936.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.800 kcal (2) G-P(sol) polarization free energy of solvation -79.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds