Wall clock time and date at job start Tue Mar 31 2020 14:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47211 * 2 1 4 4 C 1.53004 * 109.46912 * 240.00089 * 2 1 3 5 5 C 1.50696 * 109.46901 * 59.99944 * 4 2 1 6 6 H 1.08000 * 120.00126 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99882 * 179.97438 * 5 4 2 8 8 N 1.31505 * 119.99849 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99742 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46862 * 90.00422 * 9 7 5 11 11 H 1.48506 * 109.46803 * 210.00109 * 9 7 5 12 12 H 1.48496 * 109.47390 * 330.00053 * 9 7 5 13 13 C 1.52999 * 109.47368 * 120.00118 * 2 1 3 14 14 N 1.46499 * 109.47329 * 300.00312 * 13 2 1 15 15 C 1.39676 * 120.00261 * 180.02562 * 14 13 2 16 16 C 1.38926 * 120.07182 * 359.97438 * 15 14 13 17 17 C 1.38089 * 119.92422 * 179.97438 * 16 15 14 18 18 C 1.38301 * 120.07155 * 0.28052 * 17 16 15 19 19 C 1.38266 * 120.15343 * 359.44513 * 18 17 16 20 20 C 1.50699 * 119.96646 * 180.27620 * 19 18 17 21 21 S 1.81408 * 109.47181 * 270.27566 * 20 19 18 22 22 C 1.81394 * 101.91894 * 180.02562 * 21 20 19 23 23 O 1.42100 * 108.57582 * 294.48879 * 21 20 19 24 24 O 1.42105 * 108.57728 * 65.51198 * 21 20 19 25 25 C 1.38134 * 120.07086 * 0.55323 * 19 18 17 26 26 H 1.09001 * 109.46832 * 299.99629 * 1 2 3 27 27 H 1.08994 * 109.47300 * 59.99641 * 1 2 3 28 28 H 1.09000 * 109.46952 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47395 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.46824 * 300.00645 * 3 2 1 31 31 H 1.09001 * 109.46464 * 60.00146 * 3 2 1 32 32 H 1.09001 * 109.46765 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.47345 * 299.99800 * 4 2 1 34 34 H 0.97002 * 120.00151 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47435 * 179.97438 * 13 2 1 36 36 H 1.09000 * 109.47074 * 60.00087 * 13 2 1 37 37 H 0.97003 * 119.99498 * 359.97438 * 14 13 2 38 38 H 1.07999 * 120.03920 * 0.02562 * 16 15 14 39 39 H 1.08002 * 119.96096 * 179.97438 * 17 16 15 40 40 H 1.08001 * 119.92197 * 179.69817 * 18 17 16 41 41 H 1.09002 * 109.46951 * 30.27333 * 20 19 18 42 42 H 1.09000 * 109.47036 * 150.27813 * 20 19 18 43 43 H 1.08997 * 109.47787 * 60.00209 * 22 21 20 44 44 H 1.09006 * 109.46653 * 180.02562 * 22 21 20 45 45 H 1.09003 * 109.47016 * 299.99572 * 22 21 20 46 46 H 1.07998 * 120.03610 * 179.74416 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3805 7 6 1.8711 -0.4815 -3.7320 8 7 2.6271 -1.5508 -3.8527 9 14 1.2477 0.3987 -5.2571 10 1 2.2252 1.4411 -5.6612 11 1 1.0834 -0.5805 -6.3614 12 1 -0.0609 1.0352 -4.9612 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0308 2.4454 15 6 1.8897 -0.5077 3.7140 16 6 2.6884 -1.6370 3.8432 17 6 3.0210 -2.1056 5.0988 18 6 2.5552 -1.4552 6.2270 19 6 1.7648 -0.3277 6.1021 20 6 1.2647 0.3813 7.3343 21 16 -0.3325 -0.3217 7.8301 22 6 -0.7349 0.6624 9.2997 23 8 -1.2874 -0.0343 6.8178 24 8 -0.1291 -1.6703 8.2293 25 6 1.4283 0.1464 4.8490 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -1.7489 -1.2493 34 1 2.8614 -1.8822 -4.7337 35 1 3.1301 -0.7217 1.2490 36 1 1.6768 -1.7489 1.2492 37 1 0.9943 0.7581 2.3564 38 1 3.0494 -2.1475 2.9625 39 1 3.6415 -2.9837 5.1999 40 1 2.8128 -1.8266 7.2079 41 1 1.9841 0.2549 8.1433 42 1 1.1431 1.4428 7.1185 43 1 -0.7978 1.7155 9.0259 44 1 -1.6920 0.3344 9.7057 45 1 0.0432 0.5282 10.0512 46 1 0.8074 1.0247 4.7521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124116660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:16 Heat of formation + Delta-G solvation = -59.379573 kcal Electronic energy + Delta-G solvation = -25169.193188 eV Core-core repulsion = 21571.539344 eV Total energy + Delta-G solvation = -3597.653844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.61381 -37.58812 -37.21011 -36.23158 -34.62885 -32.69792 -32.17895 -30.09601 -29.41802 -27.38600 -26.90919 -26.49267 -25.71091 -22.90729 -22.42948 -20.75704 -19.12600 -18.26521 -17.18669 -16.94125 -16.52371 -16.29534 -16.07098 -15.92289 -15.31661 -14.58091 -14.39953 -14.09723 -14.02271 -13.72067 -13.61900 -13.26996 -13.09996 -12.95301 -12.87705 -12.71846 -12.29661 -12.28897 -12.21056 -12.07029 -11.54639 -11.42910 -11.27959 -11.15553 -11.02232 -10.91334 -10.84844 -10.64336 -10.37254 -10.24932 -10.00661 -9.67558 -9.21257 -8.94363 -8.76074 -8.37581 -7.21566 -6.01899 -4.02757 -0.42160 1.41384 1.68639 2.43894 3.30017 3.33966 3.37093 3.39289 3.63757 3.71965 3.91628 4.23619 4.30564 4.37129 4.44335 4.67378 5.01528 5.07541 5.19751 5.27311 5.33924 5.39610 5.44329 5.59531 5.60851 5.74190 5.80688 5.98306 6.15930 6.18587 6.25483 6.38329 6.38928 6.47824 6.61771 6.64106 6.65362 6.87915 7.04595 7.07683 7.11048 7.55720 7.60754 7.73626 7.96734 7.97172 8.39501 9.01809 9.60461 11.09611 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026635 B = 0.002293 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.991893 B =12209.873033 C =12739.195995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.130 3.870 14 N -0.736 5.736 15 C 0.228 3.772 16 C -0.188 4.188 17 C -0.069 4.069 18 C -0.173 4.173 19 C -0.050 4.050 20 C -0.559 4.559 21 S 2.415 3.585 22 C -0.662 4.662 23 O -0.930 6.930 24 O -0.933 6.933 25 C -0.188 4.188 26 H 0.030 0.970 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.017 0.983 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.399 0.601 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.127 0.873 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.854 5.165 26.596 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.007 3.993 14 N -0.363 5.363 15 C 0.121 3.879 16 C -0.212 4.212 17 C -0.088 4.088 18 C -0.194 4.194 19 C -0.052 4.052 20 C -0.686 4.686 21 S 2.597 3.403 22 C -0.811 4.811 23 O -0.928 6.928 24 O -0.930 6.930 25 C -0.212 4.212 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.236 0.764 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.146 0.854 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.221 4.281 25.913 26.358 hybrid contribution 0.003 1.429 -0.534 1.525 sum -2.219 5.710 25.380 26.108 Atomic orbital electron populations 1.21751 0.95217 1.01184 1.00278 1.20861 0.95533 0.95821 0.94880 1.21743 1.00382 0.95975 1.00229 1.19095 0.96226 0.95213 0.89605 1.21181 1.31134 1.12038 0.90516 0.92287 1.25011 0.95329 0.95080 0.99102 1.69954 1.37043 1.23020 1.23446 0.86644 0.79211 0.79407 0.83025 1.20783 1.21322 1.19937 1.21631 0.98133 0.95885 0.83674 1.45071 1.56325 1.32648 1.02242 1.17839 0.92214 0.92233 0.85569 1.20844 1.03665 0.98332 0.98327 1.20861 0.97705 0.98507 0.91703 1.20736 1.02422 0.97314 0.98962 1.18441 0.99695 0.95983 0.91119 1.29273 1.21906 1.11530 1.05911 1.08250 0.77800 0.77001 0.77247 1.30354 1.12385 1.16398 1.21937 1.93616 1.58098 1.85646 1.55402 1.93600 1.85646 1.30758 1.82980 1.20450 1.06647 1.03332 0.90734 0.95091 0.91547 0.93395 0.93475 0.91550 0.95182 0.96441 0.96384 0.93047 0.92511 0.92464 0.76444 0.85529 0.85841 0.86104 0.84275 0.84336 0.85378 0.85301 0.85419 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.05 37.16 0.30 -2.01 16 2 C -0.07 -1.33 0.54 -154.50 -0.08 -1.41 16 3 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.52 7.65 -34.44 -0.26 -13.78 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.13 2.16 3.80 -4.04 -0.02 2.15 16 14 N -0.74 -10.79 5.14 -58.64 -0.30 -11.09 16 15 C 0.23 3.26 6.65 -83.79 -0.56 2.70 16 16 C -0.19 -2.60 9.31 -39.38 -0.37 -2.97 16 17 C -0.07 -0.84 10.04 -39.61 -0.40 -1.24 16 18 C -0.17 -2.00 9.70 -39.55 -0.38 -2.38 16 19 C -0.05 -0.57 5.14 -104.65 -0.54 -1.10 16 20 C -0.56 -3.69 5.93 36.01 0.21 -3.47 16 21 S 2.41 19.33 5.34 -107.50 -0.57 18.75 16 22 C -0.66 -2.30 10.62 101.05 1.07 -1.22 16 23 O -0.93 -11.47 18.10 -57.83 -1.05 -12.52 16 24 O -0.93 -10.99 18.10 -57.83 -1.05 -12.04 16 25 C -0.19 -2.41 9.55 -39.38 -0.38 -2.78 16 26 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 27 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 31 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 36 H 0.06 0.98 7.95 -51.93 -0.41 0.56 16 37 H 0.40 5.51 6.18 -40.82 -0.25 5.26 16 38 H 0.13 1.72 6.73 -52.49 -0.35 1.37 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.14 0.49 8.09 -51.92 -0.42 0.07 16 42 H 0.14 0.55 8.08 -51.92 -0.42 0.13 16 43 H 0.13 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.13 0.42 8.14 -51.92 -0.42 0.00 16 45 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 46 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 382.43 15.07 5.76 5.76 Total: -1.00 -35.18 382.43 -10.13 -45.31 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.33 Total: 2.36 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: -1.31 Total: -27.24 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.44 Total: -36.58 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -2.09 Total: -24.56 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 19.33 SS G_CDS: -0.57 Total: 18.75 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.18 -10.13 -45.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124116660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.074 kcal (2) G-P(sol) polarization free energy of solvation -35.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds