Wall clock time and date at job start Tue Mar 31 2020 14:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47211 * 2 1 4 4 C 1.53004 * 109.46912 * 240.00089 * 2 1 3 5 5 C 1.50696 * 109.46901 * 59.99944 * 4 2 1 6 6 H 1.08000 * 120.00126 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99882 * 179.97438 * 5 4 2 8 8 N 1.31505 * 119.99849 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99742 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46862 * 90.00422 * 9 7 5 11 11 H 1.48506 * 109.46803 * 210.00109 * 9 7 5 12 12 H 1.48496 * 109.47390 * 330.00053 * 9 7 5 13 13 C 1.52999 * 109.47368 * 120.00118 * 2 1 3 14 14 N 1.46499 * 109.47329 * 300.00312 * 13 2 1 15 15 C 1.39676 * 120.00261 * 180.02562 * 14 13 2 16 16 C 1.38926 * 120.07182 * 359.97438 * 15 14 13 17 17 C 1.38089 * 119.92422 * 179.97438 * 16 15 14 18 18 C 1.38301 * 120.07155 * 0.28052 * 17 16 15 19 19 C 1.38266 * 120.15343 * 359.44513 * 18 17 16 20 20 C 1.50699 * 119.96646 * 180.27620 * 19 18 17 21 21 S 1.81408 * 109.47181 * 270.27566 * 20 19 18 22 22 C 1.81394 * 101.91894 * 180.02562 * 21 20 19 23 23 O 1.42100 * 108.57582 * 294.48879 * 21 20 19 24 24 O 1.42105 * 108.57728 * 65.51198 * 21 20 19 25 25 C 1.38134 * 120.07086 * 0.55323 * 19 18 17 26 26 H 1.09001 * 109.46832 * 299.99629 * 1 2 3 27 27 H 1.08994 * 109.47300 * 59.99641 * 1 2 3 28 28 H 1.09000 * 109.46952 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47395 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.46824 * 300.00645 * 3 2 1 31 31 H 1.09001 * 109.46464 * 60.00146 * 3 2 1 32 32 H 1.09001 * 109.46765 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.47345 * 299.99800 * 4 2 1 34 34 H 0.97002 * 120.00151 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47435 * 179.97438 * 13 2 1 36 36 H 1.09000 * 109.47074 * 60.00087 * 13 2 1 37 37 H 0.97003 * 119.99498 * 359.97438 * 14 13 2 38 38 H 1.07999 * 120.03920 * 0.02562 * 16 15 14 39 39 H 1.08002 * 119.96096 * 179.97438 * 17 16 15 40 40 H 1.08001 * 119.92197 * 179.69817 * 18 17 16 41 41 H 1.09002 * 109.46951 * 30.27333 * 20 19 18 42 42 H 1.09000 * 109.47036 * 150.27813 * 20 19 18 43 43 H 1.08997 * 109.47787 * 60.00209 * 22 21 20 44 44 H 1.09006 * 109.46653 * 180.02562 * 22 21 20 45 45 H 1.09003 * 109.47016 * 299.99572 * 22 21 20 46 46 H 1.07998 * 120.03610 * 179.74416 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3805 7 6 1.8711 -0.4815 -3.7320 8 7 2.6271 -1.5508 -3.8527 9 14 1.2477 0.3987 -5.2571 10 1 2.2252 1.4411 -5.6612 11 1 1.0834 -0.5805 -6.3614 12 1 -0.0609 1.0352 -4.9612 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0308 2.4454 15 6 1.8897 -0.5077 3.7140 16 6 2.6884 -1.6370 3.8432 17 6 3.0210 -2.1056 5.0988 18 6 2.5552 -1.4552 6.2270 19 6 1.7648 -0.3277 6.1021 20 6 1.2647 0.3813 7.3343 21 16 -0.3325 -0.3217 7.8301 22 6 -0.7349 0.6624 9.2997 23 8 -1.2874 -0.0343 6.8178 24 8 -0.1291 -1.6703 8.2293 25 6 1.4283 0.1464 4.8490 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -1.7489 -1.2493 34 1 2.8614 -1.8822 -4.7337 35 1 3.1301 -0.7217 1.2490 36 1 1.6768 -1.7489 1.2492 37 1 0.9943 0.7581 2.3564 38 1 3.0494 -2.1475 2.9625 39 1 3.6415 -2.9837 5.1999 40 1 2.8128 -1.8266 7.2079 41 1 1.9841 0.2549 8.1433 42 1 1.1431 1.4428 7.1185 43 1 -0.7978 1.7155 9.0259 44 1 -1.6920 0.3344 9.7057 45 1 0.0432 0.5282 10.0512 46 1 0.8074 1.0247 4.7521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124116660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:16 Heat of formation + Delta-G solvation = -83.449965 kcal Electronic energy + Delta-G solvation = -25170.236958 eV Core-core repulsion = 21571.539344 eV Total energy + Delta-G solvation = -3598.697614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.63293 -38.99415 -37.92505 -36.94512 -35.92302 -34.34045 -33.34892 -30.69217 -30.32940 -28.91215 -28.03133 -27.98920 -27.09321 -24.74782 -23.38751 -21.81071 -19.76568 -19.74581 -18.37630 -18.22298 -17.51350 -17.26771 -16.84278 -16.78036 -16.56609 -16.22871 -15.80267 -15.20072 -15.10093 -14.49001 -14.41468 -14.36833 -14.21405 -13.96177 -13.86090 -13.83709 -13.58981 -13.41570 -13.02270 -12.95228 -12.91741 -12.75584 -12.66879 -12.37080 -12.35022 -12.27418 -12.14004 -12.02287 -11.90465 -11.66373 -11.51405 -10.99302 -10.85642 -10.83897 -10.51948 -9.66246 -8.30607 -8.15316 -6.22363 -0.97723 0.49278 0.71159 1.40885 1.41473 1.51724 1.94539 2.41078 2.54401 2.79312 2.97938 3.16303 3.19099 3.57593 3.91460 3.98836 4.09099 4.13960 4.15403 4.22416 4.31418 4.36734 4.48159 4.59317 4.66663 4.67865 4.73708 4.74248 4.88080 4.95368 5.01897 5.09558 5.11135 5.12756 5.39474 5.41995 5.47259 5.49860 5.53999 5.55746 5.66531 5.79228 5.88480 5.93102 6.29192 6.43589 6.87736 6.92603 7.44965 8.96983 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026635 B = 0.002293 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.991893 B =12209.873033 C =12739.195995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.119 4.119 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.068 0.932 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.263 1.263 13 C 0.147 3.853 14 N -0.735 5.735 15 C 0.206 3.794 16 C -0.212 4.212 17 C -0.077 4.077 18 C -0.180 4.180 19 C -0.056 4.056 20 C -0.553 4.553 21 S 2.404 3.596 22 C -0.634 4.634 23 O -0.987 6.987 24 O -0.984 6.984 25 C -0.198 4.198 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.036 0.964 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.063 0.937 32 H -0.010 1.010 33 H -0.012 1.012 34 H 0.260 0.740 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.404 0.596 38 H 0.117 0.883 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.178 0.822 42 H 0.171 0.829 43 H 0.156 0.844 44 H 0.134 0.866 45 H 0.159 0.841 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 7.780 29.670 30.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.176 4.176 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.086 0.914 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.782 3.218 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.187 1.187 13 C 0.022 3.978 14 N -0.364 5.364 15 C 0.101 3.899 16 C -0.235 4.235 17 C -0.095 4.095 18 C -0.201 4.201 19 C -0.058 4.058 20 C -0.681 4.681 21 S 2.593 3.407 22 C -0.787 4.787 23 O -0.985 6.985 24 O -0.981 6.981 25 C -0.222 4.222 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.008 0.992 33 H 0.006 0.994 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.241 0.759 38 H 0.135 0.865 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.195 0.805 42 H 0.189 0.811 43 H 0.174 0.826 44 H 0.153 0.847 45 H 0.177 0.823 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.812 6.877 28.982 29.919 hybrid contribution 0.214 0.622 -1.287 1.445 sum -2.598 7.499 27.695 28.810 Atomic orbital electron populations 1.21672 0.94338 1.00740 1.01062 1.20669 0.96123 0.96261 0.93370 1.21656 0.99931 0.94930 1.01122 1.18963 0.94414 0.94165 0.92083 1.21578 1.30414 1.12001 0.91268 0.91412 1.25912 0.95712 0.95885 1.02584 1.70100 1.38731 1.24809 1.24085 0.85570 0.79085 0.78196 0.78942 1.20065 1.21414 1.18718 1.21222 0.97581 0.95153 0.83808 1.44788 1.57025 1.32874 1.01742 1.18059 0.93175 0.92939 0.85706 1.20950 1.04745 0.98946 0.98908 1.21166 0.97804 0.99166 0.91407 1.21162 1.01907 0.97243 0.99745 1.18925 0.98615 0.95837 0.92453 1.29291 1.21270 1.12609 1.04925 1.08069 0.77629 0.76826 0.78152 1.30095 1.13706 1.16359 1.18524 1.93550 1.59995 1.86291 1.58623 1.93539 1.86240 1.34540 1.83772 1.20741 1.06715 1.03845 0.90912 0.92015 0.92898 0.94496 0.94160 0.92944 0.91863 0.99156 0.99394 0.93137 0.93197 0.93721 0.75871 0.86532 0.84029 0.83722 0.80479 0.81126 0.82554 0.84717 0.82263 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.39 8.05 71.98 0.58 -3.81 16 2 C -0.06 -2.46 0.54 -52.18 -0.03 -2.49 16 3 C -0.12 -4.17 8.05 71.98 0.58 -3.59 16 4 C 0.04 2.10 4.04 29.85 0.12 2.22 16 5 C -0.51 -27.87 7.65 25.60 0.20 -27.68 16 6 H 0.07 3.49 5.68 -2.91 -0.02 3.48 16 7 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 8 N -0.94 -56.73 13.29 21.45 0.28 -56.45 16 9 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 13 C 0.15 5.06 3.80 86.38 0.33 5.39 16 14 N -0.73 -21.47 5.14 -339.43 -1.74 -23.22 16 15 C 0.21 5.89 6.65 38.21 0.25 6.14 16 16 C -0.21 -6.03 9.31 22.40 0.21 -5.82 16 17 C -0.08 -1.84 10.04 22.25 0.22 -1.62 16 18 C -0.18 -3.84 9.70 22.29 0.22 -3.63 16 19 C -0.06 -1.15 5.14 -19.88 -0.10 -1.25 16 20 C -0.55 -5.16 5.93 71.24 0.42 -4.74 16 21 S 2.40 33.30 5.34 -56.49 -0.30 32.99 16 22 C -0.63 -1.37 10.62 113.37 1.20 -0.16 16 23 O -0.99 -23.72 18.10 -127.37 -2.30 -26.02 16 24 O -0.98 -22.31 18.10 -127.37 -2.31 -24.61 16 25 C -0.20 -4.84 9.55 22.40 0.21 -4.62 16 26 H 0.06 1.85 6.86 -2.39 -0.02 1.83 16 27 H 0.05 2.05 6.62 -2.39 -0.02 2.03 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.97 6.62 -2.39 -0.02 1.96 16 31 H 0.06 1.79 6.86 -2.39 -0.02 1.77 16 32 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 33 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 34 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 35 H 0.05 1.77 7.95 -2.39 -0.02 1.75 16 36 H 0.04 1.63 7.95 -2.39 -0.02 1.61 16 37 H 0.40 10.65 6.18 -92.71 -0.57 10.08 16 38 H 0.12 3.41 6.73 -2.91 -0.02 3.39 16 39 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 40 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 41 H 0.18 0.30 8.09 -2.39 -0.02 0.28 16 42 H 0.17 0.52 8.08 -2.39 -0.02 0.50 16 43 H 0.16 -0.41 8.14 -2.39 -0.02 -0.43 16 44 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.16 -0.54 8.14 -2.39 -0.02 -0.56 16 46 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -81.05 382.43 0.93 -80.12 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.39 Total: 16.55 kcal Atomic # 6 Polarization: -50.30 SS G_CDS: 4.88 Total: -45.42 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -1.46 Total: -79.66 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -4.61 Total: -50.63 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 33.30 SS G_CDS: -0.30 Total: 32.99 kcal Total: -81.05 0.93 -80.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124116660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.331 kcal (2) G-P(sol) polarization free energy of solvation -81.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds