Wall clock time and date at job start Tue Mar 31 2020 15:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47145 * 2 1 4 4 C 1.52996 * 109.46950 * 119.99563 * 2 1 3 5 5 C 1.53005 * 109.47245 * 65.00457 * 4 2 1 6 6 S 1.81399 * 109.47445 * 179.97438 * 5 4 2 7 7 O 1.42104 * 110.53977 * 291.62365 * 6 5 4 8 8 O 1.42102 * 110.53976 * 68.37356 * 6 5 4 9 9 N 1.65593 * 104.45079 * 179.97438 * 6 5 4 10 10 C 1.46499 * 119.99833 * 64.99683 * 9 6 5 11 11 H 1.08997 * 109.47531 * 25.00413 * 10 9 6 12 12 C 1.53005 * 109.47071 * 145.00407 * 10 9 6 13 13 C 1.50705 * 109.46767 * 294.99927 * 12 10 9 14 14 H 1.08000 * 119.99938 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99824 * 179.97438 * 13 12 10 16 16 N 1.31515 * 120.00230 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99759 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47096 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47035 * 120.00236 * 17 15 13 20 20 H 1.48506 * 109.46558 * 239.99991 * 17 15 13 21 21 C 1.50696 * 109.47460 * 264.99828 * 10 9 6 22 22 C 1.38232 * 120.00431 * 319.73182 * 21 10 9 23 23 C 1.38233 * 120.00426 * 179.80771 * 22 21 10 24 24 C 1.38231 * 119.99762 * 0.39519 * 23 22 21 25 25 C 1.38233 * 120.00289 * 359.85408 * 24 23 22 26 26 C 1.38234 * 120.00089 * 140.00008 * 21 10 9 27 27 H 1.08997 * 109.47108 * 300.00341 * 1 2 3 28 28 H 1.09002 * 109.47044 * 60.00149 * 1 2 3 29 29 H 1.08998 * 109.46865 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47108 * 239.99658 * 2 1 3 31 31 H 1.08993 * 109.46998 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47028 * 299.99861 * 3 2 1 33 33 H 1.08996 * 109.46933 * 59.99575 * 3 2 1 34 34 H 1.09001 * 109.47372 * 305.00424 * 4 2 1 35 35 H 1.09004 * 109.47108 * 185.00169 * 4 2 1 36 36 H 1.09001 * 109.46962 * 59.99717 * 5 4 2 37 37 H 1.09004 * 109.46832 * 299.99880 * 5 4 2 38 38 H 0.97001 * 120.00285 * 245.00211 * 9 6 5 39 39 H 1.08997 * 109.47198 * 54.99873 * 12 10 9 40 40 H 1.08997 * 109.47284 * 175.00210 * 12 10 9 41 41 H 0.96996 * 120.00216 * 179.97438 * 16 15 13 42 42 H 1.08007 * 119.99636 * 359.97438 * 22 21 10 43 43 H 1.08001 * 120.00092 * 180.23155 * 23 22 21 44 44 H 1.08005 * 120.00230 * 179.83474 * 24 23 22 45 45 H 1.08001 * 119.99995 * 179.97438 * 25 24 23 46 46 H 1.08006 * 120.00229 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.6353 -2.1954 1.1881 6 16 2.2405 -3.0507 2.6689 7 8 3.6591 -3.1321 2.6528 8 8 1.5455 -2.6005 3.8237 9 7 1.7387 -4.6169 2.4756 10 6 2.2722 -5.4267 1.3776 11 1 3.2494 -5.0430 1.0846 12 6 2.4116 -6.8797 1.8365 13 6 3.4434 -6.9637 2.9318 14 1 3.9488 -6.0701 3.2673 15 6 3.7413 -8.1812 3.5063 16 7 3.1256 -9.2692 3.0981 17 14 5.0197 -8.2851 4.8644 18 1 5.5627 -6.9303 5.1379 19 1 4.3903 -8.8247 6.0964 20 1 6.1229 -9.1832 4.4379 21 6 1.3327 -5.3596 0.2013 22 6 -0.0340 -5.3956 0.4052 23 6 -0.8958 -5.3300 -0.6735 24 6 -0.3908 -5.2366 -1.9569 25 6 0.9759 -5.2058 -2.1613 26 6 1.8377 -5.2676 -1.0822 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6053 -0.2616 2.1370 35 1 3.1263 -0.6442 1.2952 36 1 2.0699 -2.6550 0.3004 37 1 0.5489 -2.2724 1.1421 38 1 1.0915 -4.9981 3.0894 39 1 1.4525 -7.2355 2.2128 40 1 2.7239 -7.4981 0.9951 41 1 3.3355 -10.1257 3.5020 42 1 -0.4285 -5.4723 1.4078 43 1 -1.9637 -5.3544 -0.5138 44 1 -1.0641 -5.1881 -2.8000 45 1 1.3705 -5.1333 -3.1641 46 1 2.9056 -5.2434 -1.2420 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124545241.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:47 Heat of formation + Delta-G solvation = -76.823588 kcal Electronic energy + Delta-G solvation = -26512.858942 eV Core-core repulsion = 22914.448669 eV Total energy + Delta-G solvation = -3598.410273 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.22314 -37.11168 -36.73474 -35.77635 -35.50899 -32.62407 -31.09998 -30.81181 -30.42892 -28.61313 -27.38875 -24.80995 -24.21254 -22.42249 -22.02834 -20.30788 -20.26579 -18.90992 -17.36830 -16.91028 -16.19864 -16.13308 -15.96465 -15.34809 -14.90638 -14.72971 -14.53025 -14.27013 -14.04520 -13.67434 -13.24904 -13.23482 -13.06608 -12.73999 -12.48517 -12.33110 -12.14167 -12.08638 -11.76979 -11.69212 -11.61167 -11.45596 -11.27392 -11.11076 -10.98444 -10.91225 -10.83960 -10.76405 -10.62900 -10.45536 -10.25945 -9.85642 -9.20953 -8.84813 -8.70158 -8.39519 -8.34698 -6.01595 -4.03174 0.60043 1.57462 1.61634 3.15895 3.34091 3.42087 3.50542 4.01836 4.07334 4.40532 4.48803 4.50968 4.63454 4.70906 5.01980 5.09378 5.10302 5.13386 5.19568 5.35394 5.36908 5.38772 5.40904 5.45745 5.53617 5.64034 5.69533 5.72941 5.74308 5.80106 5.82417 5.92974 6.09854 6.11642 6.14291 6.18591 6.35742 6.60110 6.68031 6.70055 6.95701 7.22343 7.44079 7.58600 7.70163 7.97778 8.34646 9.04581 9.61852 11.09214 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.004770 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.411216 B = 5869.158260 C = 7575.528761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.151 4.151 4 C -0.106 4.106 5 C -0.634 4.634 6 S 2.605 3.395 7 O -0.951 6.951 8 O -0.970 6.970 9 N -1.091 6.091 10 C 0.187 3.813 11 H 0.091 0.909 12 C 0.031 3.969 13 C -0.516 4.516 14 H 0.065 0.935 15 C 0.058 3.942 16 N -0.896 5.896 17 Si 0.888 3.112 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.089 4.089 22 C -0.105 4.105 23 C -0.123 4.123 24 C -0.131 4.131 25 C -0.121 4.121 26 C -0.117 4.117 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.417 0.583 39 H 0.026 0.974 40 H 0.032 0.968 41 H 0.260 0.740 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.117 0.883 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.566 15.804 -10.550 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 C -0.208 4.208 4 C -0.145 4.145 5 C -0.762 4.762 6 S 2.697 3.303 7 O -0.941 6.941 8 O -0.960 6.960 9 N -0.849 5.849 10 C 0.080 3.920 11 H 0.109 0.891 12 C -0.008 4.008 13 C -0.554 4.554 14 H 0.083 0.917 15 C -0.143 4.143 16 N -0.535 5.535 17 Si 0.716 3.284 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.091 4.091 22 C -0.123 4.123 23 C -0.141 4.141 24 C -0.150 4.150 25 C -0.139 4.139 26 C -0.136 4.136 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.253 0.747 39 H 0.045 0.955 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.140 0.860 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.935 16.029 -9.886 20.069 hybrid contribution -0.066 -0.606 0.254 0.660 sum -7.000 15.424 -9.632 19.485 Atomic orbital electron populations 1.21919 0.95122 1.02144 1.01735 1.21035 0.96089 0.95919 0.97661 1.21880 1.01213 0.95838 1.01891 1.21382 1.01879 0.91212 1.00047 1.30770 1.13279 1.08391 1.23778 1.05037 0.75183 0.74066 0.75990 1.93612 1.28562 1.85269 1.86674 1.93560 1.75577 1.81390 1.45488 1.55287 1.60088 1.28445 1.41115 1.20107 0.92842 0.97277 0.81795 0.89116 1.19341 0.98098 0.86385 0.96929 1.21278 1.21562 0.93849 1.18746 0.91709 1.24975 0.96390 0.95808 0.97103 1.69968 1.42354 0.98624 1.42601 0.86582 0.81575 0.78343 0.81927 1.19392 1.21068 1.21028 1.20778 0.95118 0.97653 0.95505 1.21006 0.92906 0.99357 0.99043 1.21107 0.99384 1.00761 0.92846 1.21041 0.95339 1.01766 0.96810 1.21056 0.93521 1.00797 0.98503 1.21089 0.99991 1.00455 0.92069 0.92550 0.92708 0.92208 0.90739 0.92443 0.92549 0.92521 0.90571 0.90402 0.85003 0.84990 0.74729 0.95544 0.95008 0.93073 0.85990 0.86573 0.86783 0.86518 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.95 37.16 0.33 -0.96 16 2 C -0.09 -0.78 2.92 -90.62 -0.26 -1.05 16 3 C -0.15 -1.18 9.19 37.16 0.34 -0.84 16 4 C -0.11 -1.13 4.69 -26.73 -0.13 -1.25 16 5 C -0.63 -7.37 5.48 37.16 0.20 -7.16 16 6 S 2.61 42.27 5.44 -107.50 -0.58 41.69 16 7 O -0.95 -19.04 17.39 -57.54 -1.00 -20.04 16 8 O -0.97 -17.90 18.08 -57.54 -1.04 -18.94 16 9 N -1.09 -18.65 4.38 -5.88 -0.03 -18.67 16 10 C 0.19 3.44 2.35 -69.08 -0.16 3.28 16 11 H 0.09 1.70 7.34 -51.93 -0.38 1.32 16 12 C 0.03 0.73 4.55 -27.88 -0.13 0.60 16 13 C -0.52 -14.05 8.84 -34.44 -0.30 -14.35 16 14 H 0.06 1.80 7.74 -52.49 -0.41 1.39 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 17 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 21 C -0.09 -1.37 4.21 -104.63 -0.44 -1.81 16 22 C -0.10 -1.49 9.32 -39.59 -0.37 -1.86 16 23 C -0.12 -1.52 10.05 -39.59 -0.40 -1.92 16 24 C -0.13 -1.54 10.05 -39.59 -0.40 -1.94 16 25 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 26 C -0.12 -1.64 9.67 -39.58 -0.38 -2.02 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.13 1.44 7.75 -51.92 -0.40 1.04 16 37 H 0.13 1.34 6.56 -51.92 -0.34 1.00 16 38 H 0.42 6.89 8.60 -34.47 -0.30 6.59 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.12 1.66 7.58 -52.48 -0.40 1.26 16 43 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 44 H 0.11 1.07 8.06 -52.48 -0.42 0.64 16 45 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.12 1.60 8.04 -52.48 -0.42 1.17 16 LS Contribution 389.28 15.07 5.87 5.87 Total: -1.00 -33.73 389.28 -11.28 -45.00 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.62 Total: 5.21 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: -2.59 Total: -31.60 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.71 Total: -44.11 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -2.04 Total: -38.98 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 42.27 SS G_CDS: -0.58 Total: 41.69 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.73 -11.28 -45.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124545241.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.820 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds