Wall clock time and date at job start Tue Mar 31 2020 15:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47145 * 2 1 4 4 C 1.52996 * 109.46950 * 119.99563 * 2 1 3 5 5 C 1.53005 * 109.47245 * 65.00457 * 4 2 1 6 6 S 1.81399 * 109.47445 * 179.97438 * 5 4 2 7 7 O 1.42104 * 110.53977 * 291.62365 * 6 5 4 8 8 O 1.42102 * 110.53976 * 68.37356 * 6 5 4 9 9 N 1.65593 * 104.45079 * 179.97438 * 6 5 4 10 10 C 1.46499 * 119.99833 * 64.99683 * 9 6 5 11 11 H 1.08997 * 109.47531 * 25.00413 * 10 9 6 12 12 C 1.53005 * 109.47071 * 145.00407 * 10 9 6 13 13 C 1.50705 * 109.46767 * 294.99927 * 12 10 9 14 14 H 1.08000 * 119.99938 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99824 * 179.97438 * 13 12 10 16 16 N 1.31515 * 120.00230 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99759 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47096 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47035 * 120.00236 * 17 15 13 20 20 H 1.48506 * 109.46558 * 239.99991 * 17 15 13 21 21 C 1.50696 * 109.47460 * 264.99828 * 10 9 6 22 22 C 1.38232 * 120.00431 * 319.73182 * 21 10 9 23 23 C 1.38233 * 120.00426 * 179.80771 * 22 21 10 24 24 C 1.38231 * 119.99762 * 0.39519 * 23 22 21 25 25 C 1.38233 * 120.00289 * 359.85408 * 24 23 22 26 26 C 1.38234 * 120.00089 * 140.00008 * 21 10 9 27 27 H 1.08997 * 109.47108 * 300.00341 * 1 2 3 28 28 H 1.09002 * 109.47044 * 60.00149 * 1 2 3 29 29 H 1.08998 * 109.46865 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47108 * 239.99658 * 2 1 3 31 31 H 1.08993 * 109.46998 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47028 * 299.99861 * 3 2 1 33 33 H 1.08996 * 109.46933 * 59.99575 * 3 2 1 34 34 H 1.09001 * 109.47372 * 305.00424 * 4 2 1 35 35 H 1.09004 * 109.47108 * 185.00169 * 4 2 1 36 36 H 1.09001 * 109.46962 * 59.99717 * 5 4 2 37 37 H 1.09004 * 109.46832 * 299.99880 * 5 4 2 38 38 H 0.97001 * 120.00285 * 245.00211 * 9 6 5 39 39 H 1.08997 * 109.47198 * 54.99873 * 12 10 9 40 40 H 1.08997 * 109.47284 * 175.00210 * 12 10 9 41 41 H 0.96996 * 120.00216 * 179.97438 * 16 15 13 42 42 H 1.08007 * 119.99636 * 359.97438 * 22 21 10 43 43 H 1.08001 * 120.00092 * 180.23155 * 23 22 21 44 44 H 1.08005 * 120.00230 * 179.83474 * 24 23 22 45 45 H 1.08001 * 119.99995 * 179.97438 * 25 24 23 46 46 H 1.08006 * 120.00229 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.6353 -2.1954 1.1881 6 16 2.2405 -3.0507 2.6689 7 8 3.6591 -3.1321 2.6528 8 8 1.5455 -2.6005 3.8237 9 7 1.7387 -4.6169 2.4756 10 6 2.2722 -5.4267 1.3776 11 1 3.2494 -5.0430 1.0846 12 6 2.4116 -6.8797 1.8365 13 6 3.4434 -6.9637 2.9318 14 1 3.9488 -6.0701 3.2673 15 6 3.7413 -8.1812 3.5063 16 7 3.1256 -9.2692 3.0981 17 14 5.0197 -8.2851 4.8644 18 1 5.5627 -6.9303 5.1379 19 1 4.3903 -8.8247 6.0964 20 1 6.1229 -9.1832 4.4379 21 6 1.3327 -5.3596 0.2013 22 6 -0.0340 -5.3956 0.4052 23 6 -0.8958 -5.3300 -0.6735 24 6 -0.3908 -5.2366 -1.9569 25 6 0.9759 -5.2058 -2.1613 26 6 1.8377 -5.2676 -1.0822 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6053 -0.2616 2.1370 35 1 3.1263 -0.6442 1.2952 36 1 2.0699 -2.6550 0.3004 37 1 0.5489 -2.2724 1.1421 38 1 1.0915 -4.9981 3.0894 39 1 1.4525 -7.2355 2.2128 40 1 2.7239 -7.4981 0.9951 41 1 3.3355 -10.1257 3.5020 42 1 -0.4285 -5.4723 1.4078 43 1 -1.9637 -5.3544 -0.5138 44 1 -1.0641 -5.1881 -2.8000 45 1 1.3705 -5.1333 -3.1641 46 1 2.9056 -5.2434 -1.2420 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124545241.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:47 Heat of formation + Delta-G solvation = -98.035291 kcal Electronic energy + Delta-G solvation = -26513.778751 eV Core-core repulsion = 22914.448669 eV Total energy + Delta-G solvation = -3599.330081 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.33048 -38.15685 -37.87030 -37.19211 -36.94336 -34.68345 -32.03250 -31.86646 -31.50712 -30.38101 -28.00033 -26.53579 -25.10886 -23.77320 -23.28296 -21.60232 -21.02407 -20.23386 -18.84218 -18.37333 -17.75589 -17.44110 -17.09031 -16.57778 -16.31409 -15.99997 -15.81278 -15.13469 -15.03839 -14.81245 -14.52312 -14.31399 -14.15658 -14.06602 -13.91145 -13.55801 -13.21043 -13.14595 -13.11714 -12.96057 -12.88197 -12.82178 -12.50556 -12.48795 -12.41280 -12.31910 -12.11941 -11.82970 -11.65555 -11.63269 -11.53794 -11.38724 -11.18133 -10.57737 -10.23597 -9.69921 -9.49554 -8.19392 -6.26508 -0.67969 0.53325 0.61892 1.35197 1.37761 1.51113 1.83087 2.40680 2.83724 2.99743 3.14564 3.26402 3.56149 3.79350 3.92869 3.94127 4.07291 4.16693 4.25990 4.32802 4.38658 4.41455 4.54358 4.62086 4.71755 4.75408 4.76292 4.84673 4.86462 4.92470 4.97523 5.06528 5.10965 5.19707 5.28355 5.29875 5.46121 5.46636 5.49347 5.59910 5.68348 5.72633 5.81322 5.94536 6.18821 6.22603 6.27124 6.88394 7.41454 8.91381 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.004770 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.411216 B = 5869.158260 C = 7575.528761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.084 4.084 3 C -0.152 4.152 4 C -0.117 4.117 5 C -0.597 4.597 6 S 2.601 3.399 7 O -0.999 6.999 8 O -0.997 6.997 9 N -1.097 6.097 10 C 0.201 3.799 11 H 0.081 0.919 12 C 0.038 3.962 13 C -0.527 4.527 14 H 0.052 0.948 15 C 0.009 3.991 16 N -0.926 5.926 17 Si 0.944 3.056 18 H -0.274 1.274 19 H -0.277 1.277 20 H -0.275 1.275 21 C -0.106 4.106 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.118 4.118 26 C -0.130 4.130 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.417 0.583 39 H 0.009 0.991 40 H 0.008 0.992 41 H 0.262 0.738 42 H 0.119 0.881 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.144 0.856 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.917 17.323 -12.712 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.104 4.104 3 C -0.209 4.209 4 C -0.156 4.156 5 C -0.731 4.731 6 S 2.699 3.301 7 O -0.989 6.989 8 O -0.988 6.988 9 N -0.854 5.854 10 C 0.094 3.906 11 H 0.099 0.901 12 C 0.000 4.000 13 C -0.565 4.565 14 H 0.070 0.930 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.770 3.230 18 H -0.199 1.199 19 H -0.202 1.202 20 H -0.200 1.200 21 C -0.108 4.108 22 C -0.135 4.135 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.136 4.136 26 C -0.148 4.148 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.252 0.748 39 H 0.028 0.972 40 H 0.026 0.974 41 H 0.071 0.929 42 H 0.137 0.863 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.162 0.838 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.267 17.516 -12.004 22.787 hybrid contribution 0.294 -1.016 0.835 1.348 sum -7.974 16.500 -11.169 21.461 Atomic orbital electron populations 1.21957 0.94553 1.02231 1.02460 1.21038 0.96546 0.96355 0.96482 1.21895 1.01288 0.95145 1.02606 1.21590 1.02242 0.90251 1.01552 1.30449 1.14436 1.08322 1.19860 1.04958 0.74063 0.73826 0.77231 1.93548 1.31597 1.85827 1.87900 1.93514 1.75573 1.81500 1.48193 1.55187 1.59883 1.29133 1.41186 1.19667 0.93858 0.93811 0.83267 0.90124 1.19134 0.95966 0.89914 0.95018 1.21583 1.22051 0.93342 1.19525 0.92965 1.25706 0.98250 0.95696 0.99236 1.70057 1.43708 0.99047 1.43852 0.85712 0.79604 0.78048 0.79659 1.19885 1.20240 1.20024 1.20440 0.95074 1.00576 0.94706 1.21097 0.92659 0.99927 0.99860 1.21401 1.00375 0.99772 0.92566 1.21455 0.95620 0.99644 0.97450 1.21371 0.93658 0.99556 0.99045 1.21240 1.00686 1.00832 0.92060 0.92458 0.91483 0.92401 0.90288 0.92447 0.91331 0.92359 0.90184 0.90392 0.83618 0.82698 0.74824 0.97244 0.97367 0.92860 0.86320 0.84182 0.83615 0.83821 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.95 71.98 0.64 -1.50 16 2 C -0.08 -1.28 2.92 -10.79 -0.03 -1.32 16 3 C -0.15 -2.00 9.19 71.98 0.66 -1.34 16 4 C -0.12 -2.28 4.69 30.59 0.14 -2.14 16 5 C -0.60 -13.02 5.48 71.98 0.39 -12.62 16 6 S 2.60 86.47 5.44 -56.49 -0.31 86.16 16 7 O -1.00 -41.65 17.39 -127.65 -2.22 -43.87 16 8 O -1.00 -37.70 18.08 -127.65 -2.31 -40.01 16 9 N -1.10 -38.97 4.38 -172.53 -0.76 -39.72 16 10 C 0.20 7.69 2.35 44.25 0.10 7.80 16 11 H 0.08 3.17 7.34 -2.39 -0.02 3.16 16 12 C 0.04 1.90 4.55 29.85 0.14 2.03 16 13 C -0.53 -29.85 8.84 25.60 0.23 -29.62 16 14 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 15 C 0.01 0.53 5.46 84.65 0.46 1.00 16 16 N -0.93 -55.44 13.29 21.45 0.28 -55.15 16 17 Si 0.94 45.97 29.54 68.60 2.03 48.00 16 18 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 21 C -0.11 -3.25 4.21 -19.87 -0.08 -3.33 16 22 C -0.12 -3.20 9.32 22.27 0.21 -2.99 16 23 C -0.12 -2.68 10.05 22.27 0.22 -2.45 16 24 C -0.12 -2.39 10.05 22.27 0.22 -2.17 16 25 C -0.12 -2.49 10.05 22.27 0.22 -2.27 16 26 C -0.13 -3.45 9.67 22.27 0.22 -3.24 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.82 6.56 -2.39 -0.02 0.80 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.15 2.91 7.75 -2.39 -0.02 2.89 16 37 H 0.16 2.76 6.56 -2.39 -0.02 2.75 16 38 H 0.42 14.55 8.60 -96.75 -0.83 13.71 16 39 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 40 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 42 H 0.12 3.23 7.58 -2.91 -0.02 3.20 16 43 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 44 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 45 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 46 H 0.12 3.17 8.04 -2.91 -0.02 3.15 16 Total: -1.00 -74.72 389.28 0.59 -74.13 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.12 Total: 24.63 kcal Atomic # 6 Polarization: -57.92 SS G_CDS: 3.75 Total: -54.17 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -0.47 Total: -94.88 kcal Atomic # 8 Polarization: -79.35 SS G_CDS: -4.53 Total: -83.88 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: 86.47 SS G_CDS: -0.31 Total: 86.16 kcal Total: -74.72 0.59 -74.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124545241.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.906 kcal (2) G-P(sol) polarization free energy of solvation -74.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds