Wall clock time and date at job start Tue Mar 31 2020 15:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46828 * 2 1 4 4 C 1.53002 * 109.47171 * 119.99862 * 2 1 3 5 5 C 1.52999 * 109.47213 * 174.99916 * 4 2 1 6 6 S 1.81395 * 109.46986 * 180.02562 * 5 4 2 7 7 O 1.42105 * 110.54530 * 291.62628 * 6 5 4 8 8 O 1.42101 * 110.54333 * 68.37799 * 6 5 4 9 9 N 1.65599 * 104.44748 * 180.02562 * 6 5 4 10 10 C 1.46496 * 120.00146 * 65.00260 * 9 6 5 11 11 H 1.09003 * 109.47010 * 334.99738 * 10 9 6 12 12 C 1.53004 * 109.47009 * 215.00238 * 10 9 6 13 13 C 1.50691 * 109.47368 * 64.99822 * 12 10 9 14 14 H 1.07995 * 120.00202 * 0.02562 * 13 12 10 15 15 C 1.37879 * 120.00160 * 179.97438 * 13 12 10 16 16 N 1.31516 * 119.99716 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00137 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47080 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46767 * 120.00383 * 17 15 13 20 20 H 1.48498 * 109.47271 * 240.00345 * 17 15 13 21 21 C 1.50698 * 109.47639 * 95.00059 * 10 9 6 22 22 C 1.38236 * 119.99751 * 39.72138 * 21 10 9 23 23 C 1.38239 * 119.99569 * 179.78997 * 22 21 10 24 24 C 1.38230 * 120.00538 * 0.44823 * 23 22 21 25 25 C 1.38239 * 119.99702 * 359.80702 * 24 23 22 26 26 C 1.38230 * 120.00167 * 220.00585 * 21 10 9 27 27 H 1.09001 * 109.46822 * 299.99835 * 1 2 3 28 28 H 1.08996 * 109.47166 * 59.99828 * 1 2 3 29 29 H 1.08997 * 109.46876 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.46933 * 240.00217 * 2 1 3 31 31 H 1.09002 * 109.46407 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47388 * 300.00036 * 3 2 1 33 33 H 1.09001 * 109.47285 * 60.00448 * 3 2 1 34 34 H 1.09004 * 109.46811 * 55.00102 * 4 2 1 35 35 H 1.09005 * 109.47229 * 295.00236 * 4 2 1 36 36 H 1.09003 * 109.46593 * 60.00151 * 5 4 2 37 37 H 1.08994 * 109.46870 * 300.00519 * 5 4 2 38 38 H 0.97001 * 120.00004 * 244.99733 * 9 6 5 39 39 H 1.09003 * 109.46966 * 184.99744 * 12 10 9 40 40 H 1.09001 * 109.47117 * 304.99468 * 12 10 9 41 41 H 0.97001 * 119.99681 * 179.97438 * 16 15 13 42 42 H 1.07998 * 119.99990 * 0.02562 * 22 21 10 43 43 H 1.08004 * 119.99737 * 180.27645 * 23 22 21 44 44 H 1.07990 * 120.00312 * 179.83195 * 24 23 22 45 45 H 1.08000 * 120.00123 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.00149 * 359.96952 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.8310 1.1880 6 16 4.1694 -1.6868 2.6688 7 8 3.9767 -0.8816 3.8237 8 8 3.7734 -3.0514 2.6527 9 7 5.8134 -1.7357 2.4755 10 6 6.5872 -0.4918 2.4663 11 1 5.9457 0.3329 2.1556 12 6 7.7558 -0.6254 1.4878 13 6 7.2230 -0.7738 0.0861 14 1 6.1574 -0.7725 -0.0895 15 6 8.0959 -0.9102 -0.9725 16 7 9.3935 -0.9112 -0.7587 17 14 7.4353 -1.0948 -2.7100 18 1 5.9509 -1.0631 -2.6812 19 1 7.9376 0.0209 -3.5516 20 1 7.8922 -2.3883 -3.2785 21 6 7.1191 -0.2207 3.8500 22 6 7.5956 -1.2625 4.6236 23 6 8.0875 -1.0132 5.8912 24 6 8.0944 0.2764 6.3888 25 6 7.6129 1.3174 5.6172 26 6 7.1250 1.0688 4.3479 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6054 -1.7198 1.2952 35 1 1.7517 -0.1583 2.1370 36 1 3.9995 0.1676 1.1421 37 1 3.8532 -1.3939 0.3003 38 1 6.2640 -2.5880 2.3684 39 1 8.3821 0.2649 1.5461 40 1 8.3477 -1.5035 1.7464 41 1 10.0076 -1.0075 -1.5034 42 1 7.5871 -2.2706 4.2362 43 1 8.4640 -1.8266 6.4940 44 1 8.4761 0.4707 7.3801 45 1 7.6179 2.3250 6.0060 46 1 6.7489 1.8821 3.7450 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124545382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:50 Heat of formation + Delta-G solvation = -78.821891 kcal Electronic energy + Delta-G solvation = -26425.367138 eV Core-core repulsion = 22826.870212 eV Total energy + Delta-G solvation = -3598.496926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.01981 -36.98980 -36.71929 -35.75441 -35.55448 -32.72767 -30.96295 -30.68028 -30.29015 -28.62218 -27.24189 -24.85212 -24.12056 -22.27387 -21.95655 -20.23887 -20.16183 -18.89266 -17.34943 -16.89419 -16.21985 -16.00378 -15.88364 -15.37796 -14.78277 -14.67914 -14.59573 -14.09730 -13.90656 -13.70067 -13.14751 -13.05505 -12.91398 -12.67269 -12.34490 -12.29836 -12.12180 -12.03804 -11.75795 -11.65009 -11.58156 -11.35470 -11.27675 -11.19788 -10.84582 -10.83259 -10.75731 -10.70712 -10.67838 -10.49247 -10.27587 -9.88392 -9.34824 -8.83073 -8.53091 -8.46875 -8.17014 -6.14680 -4.18549 0.65317 1.81169 1.84491 3.16377 3.20583 3.29536 3.29887 4.06234 4.23938 4.33488 4.51626 4.60619 4.75469 4.79913 5.10671 5.22098 5.26296 5.26691 5.28073 5.37183 5.50219 5.52998 5.53250 5.59801 5.61960 5.67778 5.78964 5.87629 5.90637 5.94400 5.97217 6.06043 6.19197 6.27812 6.28801 6.35967 6.48597 6.56991 6.86451 6.88887 7.11385 7.39936 7.43775 7.52769 7.67249 7.81700 8.18980 8.85862 9.46128 10.95952 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007747 B = 0.006090 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3613.627144 B = 4596.608107 C = 7006.356500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.154 4.154 4 C -0.106 4.106 5 C -0.632 4.632 6 S 2.607 3.393 7 O -0.959 6.959 8 O -0.972 6.972 9 N -1.093 6.093 10 C 0.195 3.805 11 H 0.078 0.922 12 C 0.025 3.975 13 C -0.521 4.521 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.889 5.889 17 Si 0.887 3.113 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.073 4.073 22 C -0.102 4.102 23 C -0.125 4.125 24 C -0.133 4.133 25 C -0.123 4.123 26 C -0.111 4.111 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.418 0.582 39 H 0.033 0.967 40 H 0.029 0.971 41 H 0.262 0.738 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.472 2.979 6.195 12.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.211 4.211 4 C -0.145 4.145 5 C -0.761 4.761 6 S 2.700 3.300 7 O -0.949 6.949 8 O -0.963 6.963 9 N -0.852 5.852 10 C 0.088 3.912 11 H 0.096 0.904 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.527 5.527 17 Si 0.715 3.285 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.075 4.075 22 C -0.121 4.121 23 C -0.143 4.143 24 C -0.151 4.151 25 C -0.141 4.141 26 C -0.129 4.129 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.253 0.747 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.137 0.863 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.870 2.782 6.854 13.148 hybrid contribution 0.255 -0.120 -1.814 1.836 sum -10.616 2.662 5.040 12.049 Atomic orbital electron populations 1.21877 0.95152 1.01817 1.01865 1.21056 0.95456 0.96685 0.97723 1.21937 1.01968 0.95535 1.01685 1.21384 0.91017 1.01957 1.00093 1.30701 1.05761 1.16173 1.23487 1.04914 0.73692 0.74695 0.76719 1.93594 1.85069 1.71789 1.44453 1.93557 1.82041 1.32876 1.87787 1.55338 1.24525 1.15011 1.90310 1.19974 0.95812 0.84093 0.91274 0.90414 1.19413 0.91277 0.98642 0.92010 1.21126 0.92910 1.50708 0.91215 0.92403 1.24975 0.94835 0.95237 0.99028 1.69960 1.01469 1.49753 1.31549 0.86627 0.79127 0.77827 0.84965 1.19703 1.20996 1.20959 1.20481 0.97241 0.93361 0.96449 1.20916 0.98064 0.99090 0.93989 1.21064 1.00459 0.96685 0.96075 1.20996 1.01382 0.93209 0.99560 1.21012 0.99701 0.98652 0.94701 1.20968 0.99976 0.96360 0.95639 0.92566 0.92542 0.92589 0.90630 0.91788 0.92665 0.92574 0.90654 0.90599 0.84542 0.84330 0.74719 0.94888 0.95309 0.92869 0.86334 0.86676 0.86847 0.86621 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 2 C -0.09 -0.98 2.92 -90.61 -0.26 -1.25 16 3 C -0.15 -1.66 8.95 37.16 0.33 -1.33 16 4 C -0.11 -1.27 4.69 -26.73 -0.13 -1.39 16 5 C -0.63 -8.64 5.67 37.16 0.21 -8.43 16 6 S 2.61 42.25 5.38 -107.50 -0.58 41.67 16 7 O -0.96 -17.65 17.77 -57.54 -1.02 -18.67 16 8 O -0.97 -17.96 18.08 -57.54 -1.04 -19.00 16 9 N -1.09 -18.70 4.36 -5.88 -0.03 -18.72 16 10 C 0.20 3.60 2.21 -69.08 -0.15 3.45 16 11 H 0.08 1.33 7.01 -51.93 -0.36 0.97 16 12 C 0.02 0.56 4.55 -27.89 -0.13 0.44 16 13 C -0.52 -12.73 8.84 -34.44 -0.30 -13.03 16 14 H 0.06 1.31 7.70 -52.49 -0.40 0.91 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -24.74 13.29 55.43 0.74 -24.01 16 17 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.07 -1.32 4.91 -104.63 -0.51 -1.83 16 22 C -0.10 -1.75 9.33 -39.58 -0.37 -2.12 16 23 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 24 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 25 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 26 C -0.11 -1.83 9.67 -39.58 -0.38 -2.22 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.75 6.56 -51.93 -0.34 0.41 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.14 1.77 5.86 -51.92 -0.30 1.47 16 37 H 0.14 1.88 8.14 -51.93 -0.42 1.45 16 38 H 0.42 6.90 8.59 -34.47 -0.30 6.60 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.12 1.92 7.55 -52.49 -0.40 1.52 16 43 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 44 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.12 1.77 8.04 -52.49 -0.42 1.34 16 LS Contribution 389.65 15.07 5.87 5.87 Total: -1.00 -31.71 389.65 -11.31 -43.02 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -7.58 Total: 8.86 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: -2.65 Total: -34.05 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.71 Total: -42.73 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -2.06 Total: -37.68 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 42.25 SS G_CDS: -0.58 Total: 41.67 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.71 -11.31 -43.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124545382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.805 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds