Wall clock time and date at job start Tue Mar 31 2020 15:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46828 * 2 1 4 4 C 1.53002 * 109.47171 * 119.99862 * 2 1 3 5 5 C 1.52999 * 109.47213 * 174.99916 * 4 2 1 6 6 S 1.81395 * 109.46986 * 180.02562 * 5 4 2 7 7 O 1.42105 * 110.54530 * 291.62628 * 6 5 4 8 8 O 1.42101 * 110.54333 * 68.37799 * 6 5 4 9 9 N 1.65599 * 104.44748 * 180.02562 * 6 5 4 10 10 C 1.46496 * 120.00146 * 65.00260 * 9 6 5 11 11 H 1.09003 * 109.47010 * 334.99738 * 10 9 6 12 12 C 1.53004 * 109.47009 * 215.00238 * 10 9 6 13 13 C 1.50691 * 109.47368 * 64.99822 * 12 10 9 14 14 H 1.07995 * 120.00202 * 0.02562 * 13 12 10 15 15 C 1.37879 * 120.00160 * 179.97438 * 13 12 10 16 16 N 1.31516 * 119.99716 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00137 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47080 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46767 * 120.00383 * 17 15 13 20 20 H 1.48498 * 109.47271 * 240.00345 * 17 15 13 21 21 C 1.50698 * 109.47639 * 95.00059 * 10 9 6 22 22 C 1.38236 * 119.99751 * 39.72138 * 21 10 9 23 23 C 1.38239 * 119.99569 * 179.78997 * 22 21 10 24 24 C 1.38230 * 120.00538 * 0.44823 * 23 22 21 25 25 C 1.38239 * 119.99702 * 359.80702 * 24 23 22 26 26 C 1.38230 * 120.00167 * 220.00585 * 21 10 9 27 27 H 1.09001 * 109.46822 * 299.99835 * 1 2 3 28 28 H 1.08996 * 109.47166 * 59.99828 * 1 2 3 29 29 H 1.08997 * 109.46876 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.46933 * 240.00217 * 2 1 3 31 31 H 1.09002 * 109.46407 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47388 * 300.00036 * 3 2 1 33 33 H 1.09001 * 109.47285 * 60.00448 * 3 2 1 34 34 H 1.09004 * 109.46811 * 55.00102 * 4 2 1 35 35 H 1.09005 * 109.47229 * 295.00236 * 4 2 1 36 36 H 1.09003 * 109.46593 * 60.00151 * 5 4 2 37 37 H 1.08994 * 109.46870 * 300.00519 * 5 4 2 38 38 H 0.97001 * 120.00004 * 244.99733 * 9 6 5 39 39 H 1.09003 * 109.46966 * 184.99744 * 12 10 9 40 40 H 1.09001 * 109.47117 * 304.99468 * 12 10 9 41 41 H 0.97001 * 119.99681 * 179.97438 * 16 15 13 42 42 H 1.07998 * 119.99990 * 0.02562 * 22 21 10 43 43 H 1.08004 * 119.99737 * 180.27645 * 23 22 21 44 44 H 1.07990 * 120.00312 * 179.83195 * 24 23 22 45 45 H 1.08000 * 120.00123 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.00149 * 359.96952 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.8310 1.1880 6 16 4.1694 -1.6868 2.6688 7 8 3.9767 -0.8816 3.8237 8 8 3.7734 -3.0514 2.6527 9 7 5.8134 -1.7357 2.4755 10 6 6.5872 -0.4918 2.4663 11 1 5.9457 0.3329 2.1556 12 6 7.7558 -0.6254 1.4878 13 6 7.2230 -0.7738 0.0861 14 1 6.1574 -0.7725 -0.0895 15 6 8.0959 -0.9102 -0.9725 16 7 9.3935 -0.9112 -0.7587 17 14 7.4353 -1.0948 -2.7100 18 1 5.9509 -1.0631 -2.6812 19 1 7.9376 0.0209 -3.5516 20 1 7.8922 -2.3883 -3.2785 21 6 7.1191 -0.2207 3.8500 22 6 7.5956 -1.2625 4.6236 23 6 8.0875 -1.0132 5.8912 24 6 8.0944 0.2764 6.3888 25 6 7.6129 1.3174 5.6172 26 6 7.1250 1.0688 4.3479 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6054 -1.7198 1.2952 35 1 1.7517 -0.1583 2.1370 36 1 3.9995 0.1676 1.1421 37 1 3.8532 -1.3939 0.3003 38 1 6.2640 -2.5880 2.3684 39 1 8.3821 0.2649 1.5461 40 1 8.3477 -1.5035 1.7464 41 1 10.0076 -1.0075 -1.5034 42 1 7.5871 -2.2706 4.2362 43 1 8.4640 -1.8266 6.4940 44 1 8.4761 0.4707 7.3801 45 1 7.6179 2.3250 6.0060 46 1 6.7489 1.8821 3.7450 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124545382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:50 Heat of formation + Delta-G solvation = -97.647960 kcal Electronic energy + Delta-G solvation = -26426.183498 eV Core-core repulsion = 22826.870212 eV Total energy + Delta-G solvation = -3599.313285 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.28439 -38.11514 -37.87272 -37.19432 -36.95622 -34.62370 -31.96564 -31.93210 -31.52021 -30.34166 -28.01343 -26.52380 -25.11666 -23.75659 -23.29089 -21.62607 -21.03267 -20.21134 -18.80896 -18.36603 -17.80974 -17.25500 -17.16322 -16.57330 -16.28416 -16.01907 -15.90087 -15.07017 -15.00471 -14.86276 -14.51347 -14.27261 -14.16998 -14.03566 -13.91689 -13.53257 -13.20185 -13.15275 -13.06894 -12.98183 -12.87054 -12.79155 -12.52486 -12.46146 -12.39223 -12.31448 -12.09056 -11.85764 -11.69313 -11.64816 -11.54528 -11.24185 -11.20503 -10.54308 -10.24180 -9.69485 -9.46118 -8.13897 -6.22422 -0.64288 0.57780 0.62411 1.41498 1.44766 1.53480 1.83188 2.43321 2.80110 3.01806 3.21939 3.27855 3.58612 3.79345 3.92077 4.00190 4.02612 4.15708 4.25197 4.27786 4.37439 4.38223 4.55772 4.62829 4.71788 4.74904 4.75983 4.83344 4.83639 4.92226 4.95680 5.05334 5.10547 5.21264 5.26745 5.29162 5.46148 5.47449 5.51107 5.61473 5.66536 5.70050 5.84742 5.94222 6.18992 6.23289 6.27235 6.92251 7.45817 8.97641 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007747 B = 0.006090 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3613.627144 B = 4596.608107 C = 7006.356500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.158 4.158 4 C -0.113 4.113 5 C -0.617 4.617 6 S 2.615 3.385 7 O -0.982 6.982 8 O -0.997 6.997 9 N -1.098 6.098 10 C 0.207 3.793 11 H 0.090 0.910 12 C 0.035 3.965 13 C -0.520 4.520 14 H 0.076 0.924 15 C 0.005 3.995 16 N -0.931 5.931 17 Si 0.946 3.054 18 H -0.253 1.253 19 H -0.286 1.286 20 H -0.288 1.288 21 C -0.100 4.100 22 C -0.126 4.126 23 C -0.133 4.133 24 C -0.132 4.132 25 C -0.125 4.125 26 C -0.130 4.130 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.417 0.583 39 H 0.006 0.994 40 H 0.003 0.997 41 H 0.260 0.740 42 H 0.115 0.885 43 H 0.139 0.861 44 H 0.148 0.852 45 H 0.147 0.853 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.206 3.930 6.421 14.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.215 4.215 4 C -0.152 4.152 5 C -0.750 4.750 6 S 2.712 3.288 7 O -0.973 6.973 8 O -0.987 6.987 9 N -0.855 5.855 10 C 0.100 3.900 11 H 0.107 0.893 12 C -0.004 4.004 13 C -0.558 4.558 14 H 0.094 0.906 15 C -0.193 4.193 16 N -0.572 5.572 17 Si 0.772 3.228 18 H -0.176 1.176 19 H -0.212 1.212 20 H -0.214 1.214 21 C -0.102 4.102 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.143 4.143 26 C -0.148 4.148 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.252 0.748 39 H 0.024 0.976 40 H 0.021 0.979 41 H 0.068 0.932 42 H 0.133 0.867 43 H 0.157 0.843 44 H 0.165 0.835 45 H 0.164 0.836 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.612 3.717 7.115 14.950 hybrid contribution 0.794 -0.388 -1.816 2.020 sum -11.818 3.329 5.299 13.372 Atomic orbital electron populations 1.21874 0.93694 1.02408 1.02652 1.21075 0.96717 0.96447 0.96745 1.21980 1.01250 0.95715 1.02564 1.21556 0.89464 1.02917 1.01296 1.30570 1.07261 1.16025 1.21103 1.04596 0.72963 0.74090 0.77180 1.93556 1.85167 1.71913 1.46618 1.93520 1.82170 1.34593 1.88443 1.55294 1.24972 1.14612 1.90615 1.19682 0.94452 0.84870 0.91008 0.89252 1.19195 0.92241 0.96129 0.92792 1.21603 0.93767 1.48596 0.91825 0.90563 1.25793 0.95011 0.95471 1.02983 1.70100 1.02838 1.51806 1.32480 0.85681 0.79567 0.77195 0.80376 1.17621 1.21195 1.21439 1.20535 0.98819 0.94463 0.96376 1.21099 0.99185 0.98977 0.95232 1.21420 0.99883 0.98218 0.95518 1.21448 1.00145 0.92539 1.00870 1.21425 0.98497 1.00422 0.93914 1.21262 1.00579 0.96088 0.96907 0.91972 0.91623 0.92145 0.90970 0.92925 0.91725 0.91886 0.89937 0.89758 0.83615 0.83780 0.74793 0.97593 0.97875 0.93156 0.86726 0.84328 0.83462 0.83555 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.19 71.98 0.66 -1.68 16 2 C -0.09 -1.75 2.92 -10.79 -0.03 -1.78 16 3 C -0.16 -3.04 8.95 71.98 0.64 -2.40 16 4 C -0.11 -2.49 4.69 30.59 0.14 -2.34 16 5 C -0.62 -15.89 5.67 71.98 0.41 -15.48 16 6 S 2.62 83.75 5.38 -56.49 -0.30 83.45 16 7 O -0.98 -35.81 17.77 -127.65 -2.27 -38.08 16 8 O -1.00 -36.67 18.08 -127.65 -2.31 -38.98 16 9 N -1.10 -38.02 4.36 -172.52 -0.75 -38.77 16 10 C 0.21 7.75 2.21 44.25 0.10 7.84 16 11 H 0.09 3.05 7.01 -2.39 -0.02 3.04 16 12 C 0.03 1.63 4.55 29.85 0.14 1.76 16 13 C -0.52 -25.47 8.84 25.60 0.23 -25.24 16 14 H 0.08 3.36 7.70 -2.91 -0.02 3.34 16 15 C 0.01 0.28 5.46 84.65 0.46 0.74 16 16 N -0.93 -53.24 13.29 21.45 0.28 -52.96 16 17 Si 0.95 40.94 29.54 68.60 2.03 42.97 16 18 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 19 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 21 C -0.10 -3.63 4.91 -19.87 -0.10 -3.73 16 22 C -0.13 -4.40 9.33 22.27 0.21 -4.19 16 23 C -0.13 -3.90 10.05 22.27 0.22 -3.67 16 24 C -0.13 -3.48 10.05 22.27 0.22 -3.26 16 25 C -0.12 -3.44 10.05 22.27 0.22 -3.21 16 26 C -0.13 -4.22 9.67 22.27 0.22 -4.00 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.12 6.56 -2.39 -0.02 1.10 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.15 3.53 5.86 -2.39 -0.01 3.52 16 37 H 0.14 3.62 8.14 -2.39 -0.02 3.60 16 38 H 0.42 14.28 8.59 -96.74 -0.83 13.45 16 39 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 42 H 0.11 3.90 7.55 -2.91 -0.02 3.87 16 43 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 44 H 0.15 2.83 8.06 -2.92 -0.02 2.81 16 45 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 46 H 0.13 3.77 8.04 -2.91 -0.02 3.74 16 Total: -1.00 -68.26 389.65 0.54 -67.71 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.12 Total: 35.31 kcal Atomic # 6 Polarization: -64.40 SS G_CDS: 3.75 Total: -60.65 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -0.47 Total: -91.73 kcal Atomic # 8 Polarization: -72.48 SS G_CDS: -4.58 Total: -77.06 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Atomic # 16 Polarization: 83.75 SS G_CDS: -0.30 Total: 83.45 kcal Total: -68.26 0.54 -67.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124545382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.935 kcal (2) G-P(sol) polarization free energy of solvation -68.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds