Wall clock time and date at job start Tue Mar 31 2020 14:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 C 1.52997 * 109.47212 * 270.02160 * 7 6 5 9 9 N 1.46508 * 109.47032 * 179.97438 * 8 7 6 10 10 S 1.65599 * 119.99788 * 164.99654 * 9 8 7 11 11 O 1.42094 * 104.27571 * 181.07185 * 10 9 8 12 12 O 1.42091 * 104.28148 * 308.93375 * 10 9 8 13 13 C 1.81403 * 104.44777 * 65.00703 * 10 9 8 14 14 C 1.52996 * 109.47282 * 179.97438 * 13 10 9 15 15 C 1.53004 * 109.47223 * 179.97438 * 14 13 10 16 16 C 1.50701 * 109.47258 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99797 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99833 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00248 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99706 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47694 * 59.99883 * 20 18 16 22 22 H 1.48503 * 109.47220 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47310 * 299.99773 * 20 18 16 24 24 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 25 25 C 1.38230 * 119.99880 * 359.95582 * 24 6 5 26 26 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 31 31 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 32 32 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 33 33 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 34 34 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 35 35 H 1.09002 * 109.47611 * 299.99724 * 8 7 6 36 36 H 1.09001 * 109.47289 * 60.00082 * 8 7 6 37 37 H 0.96999 * 119.99967 * 345.00748 * 9 8 7 38 38 H 1.09004 * 109.46988 * 300.00051 * 13 10 9 39 39 H 1.08998 * 109.47333 * 59.99264 * 13 10 9 40 40 H 1.08991 * 109.47374 * 299.99860 * 14 13 10 41 41 H 1.08998 * 109.46883 * 60.00295 * 14 13 10 42 42 H 1.09008 * 109.47066 * 300.00122 * 15 14 13 43 43 H 1.08998 * 109.47107 * 59.99837 * 15 14 13 44 44 H 0.97007 * 119.99462 * 180.02562 * 19 18 16 45 45 H 1.08008 * 119.99983 * 179.97438 * 24 6 5 46 46 H 1.08007 * 119.99843 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 6 4.9867 5.4480 0.0001 9 7 5.4750 6.8293 -0.0005 10 16 7.0570 7.1483 0.3707 11 8 7.1560 8.5638 0.2953 12 8 7.2746 6.4629 1.5961 13 6 8.0017 6.3720 -0.9694 14 6 9.4967 6.6003 -0.7381 15 6 10.2935 5.9450 -1.8680 16 6 11.7662 6.1693 -1.6399 17 1 12.1004 6.7234 -0.7753 18 6 12.6867 5.6671 -2.5350 19 7 12.2797 4.9928 -3.5882 20 14 14.5122 5.9446 -2.2518 21 1 14.9089 5.3426 -0.9536 22 1 15.2855 5.3097 -3.3492 23 1 14.7935 7.4025 -2.2280 24 6 2.7240 3.3755 1.1972 25 6 2.2628 2.0724 1.1971 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.0927 1.5598 -2.1325 32 1 2.9047 3.8844 -2.1324 33 1 3.0933 5.9619 -0.8899 34 1 3.0934 5.9618 0.8901 35 1 5.3501 4.9342 0.8901 36 1 5.3500 4.9342 -0.8899 37 1 4.8716 7.5569 -0.2181 38 1 7.7955 5.3018 -0.9866 39 1 7.7102 6.8134 -1.9224 40 1 9.7026 7.6705 -0.7212 41 1 9.7884 6.1591 0.2149 42 1 10.0876 4.8747 -1.8845 43 1 10.0019 6.3858 -2.8213 44 1 12.9275 4.6391 -4.2177 45 1 2.9041 3.8846 2.1326 46 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128648593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:56 Heat of formation + Delta-G solvation = -86.540542 kcal Electronic energy + Delta-G solvation = -24238.189837 eV Core-core repulsion = 20639.358205 eV Total energy + Delta-G solvation = -3598.831632 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.86237 -36.95362 -36.43835 -35.72920 -34.66271 -34.43516 -32.18215 -31.34328 -31.17419 -27.84212 -27.78861 -24.33462 -23.72375 -22.99774 -22.56300 -20.81943 -20.57614 -19.19718 -17.50620 -16.66775 -16.49953 -16.23871 -16.09024 -15.69026 -15.41353 -14.99200 -14.68802 -14.46521 -14.16714 -14.02455 -13.93721 -13.54205 -13.42517 -12.69583 -12.59192 -12.52704 -12.29926 -12.02125 -11.91560 -11.89523 -11.78245 -11.75573 -11.57373 -11.45620 -11.22000 -11.08003 -11.03741 -10.89420 -10.86815 -10.43609 -9.94305 -9.71269 -9.32582 -9.15876 -9.08852 -8.77063 -8.40190 -6.05329 -4.08428 0.47214 1.05493 1.16645 2.85502 3.32433 3.36197 3.39472 3.46940 3.95903 4.36425 4.42463 4.43181 4.47762 4.60374 4.68947 4.73176 4.78019 4.94811 4.99396 5.12793 5.17063 5.19924 5.22868 5.26495 5.29089 5.31058 5.47104 5.53775 5.57291 5.61248 5.75355 5.84612 5.85767 5.88019 5.91696 6.17453 6.27608 6.36601 6.36946 6.45672 6.75437 6.87015 6.90598 7.57073 7.67264 7.92607 8.33159 8.97598 9.56180 11.05841 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.002290 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.601684 B =12225.625771 C =13757.507450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.085 4.085 4 C -0.116 4.116 5 C -0.110 4.110 6 C -0.088 4.088 7 C -0.085 4.085 8 C 0.119 3.881 9 N -1.126 6.126 10 S 2.603 3.397 11 O -0.964 6.964 12 O -0.962 6.962 13 C -0.609 4.609 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.110 4.110 25 C -0.116 4.116 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.414 0.586 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.262 0.738 45 H 0.124 0.876 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.209 -6.189 5.841 27.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.085 4.085 4 C -0.134 4.134 5 C -0.128 4.128 6 C -0.089 4.089 7 C -0.124 4.124 8 C -0.008 4.008 9 N -0.884 5.884 10 S 2.699 3.301 11 O -0.954 6.954 12 O -0.952 6.952 13 C -0.741 4.741 14 C -0.145 4.145 15 C -0.008 4.008 16 C -0.565 4.565 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.723 3.277 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.128 4.128 25 C -0.134 4.134 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.248 0.752 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.072 0.928 45 H 0.142 0.858 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -25.747 -5.949 6.510 27.215 hybrid contribution 0.742 -0.026 -0.747 1.053 sum -25.004 -5.975 5.763 26.347 Atomic orbital electron populations 1.21745 0.94753 1.01685 1.02175 1.20556 0.96140 0.92735 1.02967 1.19919 0.99103 0.96243 0.93273 1.21024 0.99990 0.94867 0.97559 1.21072 0.99298 0.94843 0.97632 1.19725 1.00037 0.95753 0.93375 1.20749 0.94387 0.93361 1.03884 1.21303 0.94702 0.82067 1.02712 1.55724 1.29655 1.13992 1.89051 1.05229 0.73452 0.74673 0.76792 1.93576 1.85248 1.28862 1.87755 1.93564 1.84494 1.76181 1.40998 1.30539 1.11538 1.13561 1.18419 1.21498 0.87832 1.02130 1.03081 1.19060 0.93872 0.95818 0.92010 1.21219 0.91337 1.34954 1.08989 0.92409 1.25022 0.99231 0.95059 0.95092 1.69951 1.34425 1.36418 1.12657 0.86608 0.84801 0.78528 0.77798 1.20114 1.21256 1.20129 1.21090 0.99166 0.94866 0.97710 1.21018 1.00007 0.94872 0.97549 0.92583 0.92593 0.92417 0.91009 0.90983 0.86119 0.85856 0.90156 0.90074 0.89955 0.91426 0.75220 0.85556 0.85304 0.91559 0.91562 0.96143 0.96135 0.92849 0.85846 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 37.16 0.37 -0.44 16 2 C -0.09 -0.55 6.06 -27.89 -0.17 -0.72 16 3 C -0.09 -0.69 5.13 -104.63 -0.54 -1.23 16 4 C -0.12 -0.96 9.70 -39.58 -0.38 -1.34 16 5 C -0.11 -0.92 9.70 -39.59 -0.38 -1.31 16 6 C -0.09 -0.75 5.13 -104.62 -0.54 -1.29 16 7 C -0.09 -0.64 5.49 -27.88 -0.15 -0.80 16 8 C 0.12 1.11 6.11 -4.04 -0.02 1.08 16 9 N -1.13 -11.52 5.89 -10.61 -0.06 -11.58 16 10 S 2.60 37.47 5.46 -107.50 -0.59 36.88 16 11 O -0.96 -16.71 18.08 -57.54 -1.04 -17.75 16 12 O -0.96 -16.80 17.50 -57.54 -1.01 -17.81 16 13 C -0.61 -9.29 6.07 37.16 0.23 -9.06 16 14 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 15 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 16 C -0.53 -14.90 9.11 -34.44 -0.31 -15.22 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 20 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.11 -0.95 9.70 -39.58 -0.38 -1.33 16 25 C -0.12 -0.96 9.70 -39.59 -0.38 -1.35 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 35 H 0.08 0.85 7.70 -51.93 -0.40 0.45 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.41 3.38 8.62 -34.47 -0.30 3.08 16 38 H 0.13 1.72 8.14 -51.92 -0.42 1.30 16 39 H 0.13 1.76 8.14 -51.92 -0.42 1.33 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.02 0.54 8.14 -51.92 -0.42 0.11 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 46 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 396.83 15.07 5.98 5.98 Total: -1.00 -35.45 396.83 -11.89 -47.34 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.84 Total: -0.69 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: -3.05 Total: -33.10 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.67 Total: -37.50 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -2.05 Total: -35.56 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 37.47 SS G_CDS: -0.59 Total: 36.88 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.45 -11.89 -47.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128648593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.204 kcal (2) G-P(sol) polarization free energy of solvation -35.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds