Wall clock time and date at job start Tue Mar 31 2020 14:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 C 1.52997 * 109.47212 * 270.02160 * 7 6 5 9 9 N 1.46508 * 109.47032 * 179.97438 * 8 7 6 10 10 S 1.65599 * 119.99788 * 164.99654 * 9 8 7 11 11 O 1.42094 * 104.27571 * 181.07185 * 10 9 8 12 12 O 1.42091 * 104.28148 * 308.93375 * 10 9 8 13 13 C 1.81403 * 104.44777 * 65.00703 * 10 9 8 14 14 C 1.52996 * 109.47282 * 179.97438 * 13 10 9 15 15 C 1.53004 * 109.47223 * 179.97438 * 14 13 10 16 16 C 1.50701 * 109.47258 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99797 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99833 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00248 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99706 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47694 * 59.99883 * 20 18 16 22 22 H 1.48503 * 109.47220 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47310 * 299.99773 * 20 18 16 24 24 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 25 25 C 1.38230 * 119.99880 * 359.95582 * 24 6 5 26 26 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 31 31 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 32 32 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 33 33 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 34 34 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 35 35 H 1.09002 * 109.47611 * 299.99724 * 8 7 6 36 36 H 1.09001 * 109.47289 * 60.00082 * 8 7 6 37 37 H 0.96999 * 119.99967 * 345.00748 * 9 8 7 38 38 H 1.09004 * 109.46988 * 300.00051 * 13 10 9 39 39 H 1.08998 * 109.47333 * 59.99264 * 13 10 9 40 40 H 1.08991 * 109.47374 * 299.99860 * 14 13 10 41 41 H 1.08998 * 109.46883 * 60.00295 * 14 13 10 42 42 H 1.09008 * 109.47066 * 300.00122 * 15 14 13 43 43 H 1.08998 * 109.47107 * 59.99837 * 15 14 13 44 44 H 0.97007 * 119.99462 * 180.02562 * 19 18 16 45 45 H 1.08008 * 119.99983 * 179.97438 * 24 6 5 46 46 H 1.08007 * 119.99843 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 6 4.9867 5.4480 0.0001 9 7 5.4750 6.8293 -0.0005 10 16 7.0570 7.1483 0.3707 11 8 7.1560 8.5638 0.2953 12 8 7.2746 6.4629 1.5961 13 6 8.0017 6.3720 -0.9694 14 6 9.4967 6.6003 -0.7381 15 6 10.2935 5.9450 -1.8680 16 6 11.7662 6.1693 -1.6399 17 1 12.1004 6.7234 -0.7753 18 6 12.6867 5.6671 -2.5350 19 7 12.2797 4.9928 -3.5882 20 14 14.5122 5.9446 -2.2518 21 1 14.9089 5.3426 -0.9536 22 1 15.2855 5.3097 -3.3492 23 1 14.7935 7.4025 -2.2280 24 6 2.7240 3.3755 1.1972 25 6 2.2628 2.0724 1.1971 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.0927 1.5598 -2.1325 32 1 2.9047 3.8844 -2.1324 33 1 3.0933 5.9619 -0.8899 34 1 3.0934 5.9618 0.8901 35 1 5.3501 4.9342 0.8901 36 1 5.3500 4.9342 -0.8899 37 1 4.8716 7.5569 -0.2181 38 1 7.7955 5.3018 -0.9866 39 1 7.7102 6.8134 -1.9224 40 1 9.7026 7.6705 -0.7212 41 1 9.7884 6.1591 0.2149 42 1 10.0876 4.8747 -1.8845 43 1 10.0019 6.3858 -2.8213 44 1 12.9275 4.6391 -4.2177 45 1 2.9041 3.8846 2.1326 46 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128648593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:55 Heat of formation + Delta-G solvation = -108.724721 kcal Electronic energy + Delta-G solvation = -24239.151815 eV Core-core repulsion = 20639.358205 eV Total energy + Delta-G solvation = -3599.793610 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.44870 -38.20281 -37.24061 -36.99936 -36.46250 -35.06861 -34.16212 -31.96845 -31.76649 -29.65147 -28.46277 -25.62120 -24.95663 -23.59441 -23.17048 -22.41967 -21.32003 -20.33237 -18.72037 -18.49101 -17.50396 -17.19574 -16.89058 -16.68090 -16.49545 -16.28273 -15.91511 -15.52577 -15.30647 -14.59249 -14.50244 -14.47667 -14.14162 -14.10714 -14.02231 -13.53055 -13.38286 -13.26742 -13.20402 -13.11283 -12.97302 -12.73301 -12.65675 -12.57694 -12.48459 -12.30232 -12.15012 -11.97342 -11.74202 -11.62317 -11.61576 -11.38868 -11.10913 -10.57414 -10.36589 -9.77077 -9.37873 -8.22921 -6.33998 -0.72135 0.44020 0.55272 1.39866 1.42494 1.50412 1.80897 2.39562 2.76697 2.86392 3.10439 3.25782 3.72019 3.84957 3.91665 3.93950 4.01098 4.08601 4.15536 4.20762 4.37779 4.40795 4.52686 4.57764 4.62485 4.65701 4.68948 4.71944 4.74267 4.96360 4.99132 5.06783 5.08785 5.10204 5.16791 5.25687 5.27981 5.39331 5.45012 5.57481 5.62791 5.75749 5.78243 5.79148 6.13282 6.18813 6.19498 6.81503 7.35219 8.88323 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.002290 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.601684 B =12225.625771 C =13757.507450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.094 4.094 4 C -0.129 4.129 5 C -0.119 4.119 6 C -0.098 4.098 7 C -0.078 4.078 8 C 0.111 3.889 9 N -1.108 6.108 10 S 2.635 3.365 11 O -0.992 6.992 12 O -0.992 6.992 13 C -0.610 4.610 14 C -0.107 4.107 15 C 0.031 3.969 16 C -0.553 4.553 17 H 0.060 0.940 18 C 0.002 3.998 19 N -0.930 5.930 20 Si 0.963 3.037 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.267 1.267 24 C -0.123 4.123 25 C -0.129 4.129 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.427 0.573 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.002 0.998 43 H 0.003 0.997 44 H 0.265 0.735 45 H 0.130 0.870 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.917 -6.160 5.986 28.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.094 4.094 4 C -0.147 4.147 5 C -0.137 4.137 6 C -0.099 4.099 7 C -0.117 4.117 8 C -0.015 4.015 9 N -0.870 5.870 10 S 2.730 3.270 11 O -0.982 6.982 12 O -0.982 6.982 13 C -0.741 4.741 14 C -0.146 4.146 15 C -0.007 4.007 16 C -0.591 4.591 17 H 0.079 0.921 18 C -0.197 4.197 19 N -0.569 5.569 20 Si 0.788 3.212 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.192 1.192 24 C -0.141 4.141 25 C -0.146 4.146 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.264 0.736 38 H 0.161 0.839 39 H 0.165 0.835 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.074 0.926 45 H 0.148 0.852 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -26.458 -5.907 6.657 27.915 hybrid contribution 0.874 -0.088 -0.805 1.192 sum -25.584 -5.995 5.852 26.920 Atomic orbital electron populations 1.21721 0.94156 1.02308 1.01885 1.20592 0.96616 0.91809 1.03373 1.20185 0.98864 0.97093 0.93277 1.21276 1.00061 0.95151 0.98185 1.21312 0.99166 0.95058 0.98195 1.19858 1.00350 0.96223 0.93442 1.20712 0.92802 0.93121 1.05066 1.21496 0.96100 0.81064 1.02875 1.55267 1.27932 1.15141 1.88658 1.04045 0.73951 0.73315 0.75701 1.93534 1.86110 1.30620 1.87938 1.93528 1.85449 1.76629 1.42553 1.30508 1.08278 1.15231 1.20089 1.21311 0.90709 1.01585 1.01016 1.18962 0.93682 0.94963 0.93131 1.21721 0.93175 1.35042 1.09210 0.92144 1.25947 1.04232 0.94691 0.94782 1.70067 1.36090 1.37273 1.13516 0.85526 0.78861 0.78814 0.78032 1.19235 1.20613 1.19233 1.21308 0.99379 0.95222 0.98233 1.21247 1.00115 0.95054 0.98233 0.92857 0.92882 0.91340 0.90606 0.90576 0.84984 0.84557 0.88443 0.89499 0.90980 0.90260 0.73569 0.83914 0.83506 0.91498 0.91584 0.97946 0.97879 0.92628 0.85183 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.89 71.98 0.71 -0.72 16 2 C -0.09 -1.01 6.06 29.85 0.18 -0.83 16 3 C -0.09 -1.45 5.13 -19.87 -0.10 -1.55 16 4 C -0.13 -1.99 9.70 22.27 0.22 -1.77 16 5 C -0.12 -1.83 9.70 22.27 0.22 -1.61 16 6 C -0.10 -1.54 5.13 -19.86 -0.10 -1.64 16 7 C -0.08 -1.02 5.49 29.85 0.16 -0.85 16 8 C 0.11 1.85 6.11 86.38 0.53 2.38 16 9 N -1.11 -20.33 5.89 -187.47 -1.10 -21.43 16 10 S 2.63 72.52 5.46 -56.49 -0.31 72.22 16 11 O -0.99 -33.21 18.08 -127.65 -2.31 -35.52 16 12 O -0.99 -33.76 17.50 -127.65 -2.23 -36.00 16 13 C -0.61 -17.95 6.07 71.98 0.44 -17.52 16 14 C -0.11 -4.34 5.16 30.59 0.16 -4.19 16 15 C 0.03 1.60 4.97 29.85 0.15 1.74 16 16 C -0.55 -31.63 9.11 25.60 0.23 -31.39 16 17 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 18 C 0.00 0.10 5.46 84.65 0.46 0.56 16 19 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 20 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 C -0.12 -2.01 9.70 22.27 0.22 -1.80 16 25 C -0.13 -2.04 9.70 22.27 0.22 -1.82 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 30 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 31 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.10 0.94 8.09 -2.39 -0.02 0.92 16 34 H 0.09 1.04 8.09 -2.39 -0.02 1.02 16 35 H 0.07 1.39 7.70 -2.39 -0.02 1.37 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.43 5.87 8.62 -96.75 -0.83 5.04 16 38 H 0.14 3.70 8.14 -2.39 -0.02 3.69 16 39 H 0.15 3.77 8.14 -2.39 -0.02 3.75 16 40 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 43 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 45 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 46 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -75.61 396.83 0.15 -75.46 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.11 Total: 15.55 kcal Atomic # 6 Polarization: -64.70 SS G_CDS: 3.68 Total: -61.01 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -0.82 Total: -77.05 kcal Atomic # 8 Polarization: -66.98 SS G_CDS: -4.54 Total: -71.52 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 72.52 SS G_CDS: -0.31 Total: 72.22 kcal Total: -75.61 0.15 -75.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128648593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.264 kcal (2) G-P(sol) polarization free energy of solvation -75.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds