Wall clock time and date at job start Tue Mar 31 2020 13:50:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42894 * 1
3 3 C 1.42900 * 114.00429 * 2 1
4 4 C 1.52997 * 109.47014 * 179.97438 * 3 2 1
5 5 N 1.46503 * 109.47451 * 65.00134 * 4 3 2
6 6 C 1.46504 * 119.99753 * 270.00245 * 5 4 3
7 7 C 1.50702 * 109.46701 * 269.99667 * 6 5 4
8 8 H 1.08006 * 120.00102 * 359.97438 * 7 6 5
9 9 C 1.37880 * 119.99886 * 180.02562 * 7 6 5
10 10 N 1.31508 * 119.99927 * 359.97438 * 9 7 6
11 11 Si 1.86802 * 119.99706 * 179.97438 * 9 7 6
12 12 H 1.48506 * 109.46939 * 90.00154 * 11 9 7
13 13 H 1.48500 * 109.46939 * 209.99851 * 11 9 7
14 14 H 1.48488 * 109.47453 * 329.99728 * 11 9 7
15 15 C 1.34779 * 120.00215 * 89.99322 * 5 4 3
16 16 O 1.21277 * 119.99702 * 180.02562 * 15 5 4
17 17 C 1.50697 * 120.00063 * 0.02562 * 15 5 4
18 18 O 1.42893 * 109.47063 * 180.02562 * 17 15 5
19 19 C 1.35958 * 116.99849 * 180.02562 * 18 17 15
20 20 C 1.38655 * 120.06374 * 0.02562 * 19 18 17
21 21 C 1.38177 * 119.97092 * 179.97438 * 20 19 18
22 22 C 1.50703 * 119.95723 * 179.97438 * 21 20 19
23 23 C 1.38267 * 120.09433 * 0.02562 * 21 20 19
24 24 C 1.38250 * 120.12767 * 359.95561 * 23 21 20
25 25 C 1.38338 * 120.03013 * 0.04595 * 24 23 21
26 26 F 1.35100 * 120.04992 * 180.25798 * 25 24 23
27 27 H 1.09003 * 109.47098 * 300.00938 * 1 2 3
28 28 H 1.09007 * 109.46649 * 60.00368 * 1 2 3
29 29 H 1.09000 * 109.47628 * 180.02562 * 1 2 3
30 30 H 1.08994 * 109.47014 * 59.99947 * 3 2 1
31 31 H 1.08997 * 109.46634 * 299.99376 * 3 2 1
32 32 H 1.08993 * 109.47505 * 304.99847 * 4 3 2
33 33 H 1.08998 * 109.47182 * 184.99601 * 4 3 2
34 34 H 1.09001 * 109.47433 * 29.98969 * 6 5 4
35 35 H 1.08995 * 109.47403 * 149.99469 * 6 5 4
36 36 H 0.97005 * 120.00182 * 179.97438 * 10 9 7
37 37 H 1.08997 * 109.47077 * 59.99708 * 17 15 5
38 38 H 1.09004 * 109.46681 * 299.99662 * 17 15 5
39 39 H 1.08005 * 120.01507 * 359.95751 * 20 19 18
40 40 H 1.09003 * 109.47192 * 89.99621 * 22 21 20
41 41 H 1.08999 * 109.47384 * 210.00325 * 22 21 20
42 42 H 1.09004 * 109.46808 * 330.00075 * 22 21 20
43 43 H 1.08000 * 119.93535 * 179.97438 * 23 21 20
44 44 H 1.08000 * 119.99054 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5354 1.1845 0.0006
5 7 3.9767 0.5638 -1.2509
6 6 4.1061 -0.8928 -1.3403
7 6 5.5016 -1.2985 -0.9411
8 1 6.2202 -0.5465 -0.6504
9 6 5.8611 -2.6295 -0.9481
10 7 4.9862 -3.5451 -1.3026
11 14 7.5911 -3.1322 -0.4540
12 1 7.6344 -3.3846 1.0089
13 1 7.9738 -4.3691 -1.1812
14 1 8.5401 -2.0428 -0.7967
15 6 4.2634 1.3327 -2.3201
16 8 4.6282 0.8187 -3.3562
17 6 4.1306 2.8309 -2.2280
18 8 4.4875 3.4186 -3.4807
19 6 4.4220 4.7738 -3.5676
20 6 4.0232 5.5218 -2.4704
21 6 3.9578 6.8990 -2.5607
22 6 3.5237 7.7117 -1.3681
23 6 4.2890 7.5327 -3.7442
24 6 4.6875 6.7908 -4.8406
25 6 4.7548 5.4117 -4.7559
26 9 5.1492 4.6867 -5.8255
27 1 -0.3633 0.5140 0.8899
28 1 -0.3633 0.5138 -0.8901
29 1 -0.3634 -1.0276 0.0005
30 1 1.6887 1.8463 0.8899
31 1 1.6887 1.8462 -0.8900
32 1 3.8508 0.5684 0.8426
33 1 3.9785 2.1763 0.0901
34 1 3.3857 -1.3634 -0.6712
35 1 3.9137 -1.2126 -2.3643
36 1 5.2393 -4.4816 -1.3078
37 1 4.7925 3.2071 -1.4480
38 1 3.0998 3.0901 -1.9861
39 1 3.7635 5.0281 -1.5455
40 1 4.3965 7.9743 -0.7703
41 1 3.0294 8.6215 -1.7088
42 1 2.8312 7.1269 -0.7626
43 1 4.2366 8.6093 -3.8121
44 1 4.9461 7.2881 -5.7638
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000134627209.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:50:24
Heat of formation + Delta-G solvation = -132.408186 kcal
Electronic energy + Delta-G solvation = -27767.512771 eV
Core-core repulsion = 23600.478993 eV
Total energy + Delta-G solvation = -4167.033778 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 325.152 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-48.73732 -40.37539 -39.11890 -37.80082 -37.30249 -34.90218 -32.75319 -32.57932
-30.56712 -29.72681 -28.94616 -27.03119 -26.38445 -25.93557 -23.34287 -22.81401
-22.16528 -21.81303 -18.74024 -18.30880 -17.15272 -17.04871 -16.65380 -16.48002
-16.27070 -16.01150 -15.47558 -15.28735 -15.09646 -14.71178 -14.66374 -14.46418
-14.21490 -13.94741 -13.64923 -13.46262 -13.30712 -12.87147 -12.37110 -12.25198
-12.16111 -11.94779 -11.86237 -11.75692 -11.69541 -11.35537 -11.26481 -11.06320
-10.91055 -10.83277 -10.43683 -10.12093 -9.59919 -9.50973 -9.05343 -8.98551
-8.36660 -8.26943 -7.71732 -5.97990 -4.02470 0.89211 1.06421 2.74603
3.21944 3.32847 3.33891 3.40774 3.45551 3.90339 3.97473 4.15829
4.40940 4.49124 4.49960 4.75393 4.80824 4.89803 4.95032 5.04552
5.20114 5.22484 5.27375 5.33129 5.34628 5.37765 5.40091 5.48291
5.50278 5.51737 5.54825 5.77356 5.81373 5.83026 5.97366 6.11918
6.21244 6.45440 7.05883 7.26208 7.32805 7.50022 7.59088 7.98645
8.29206 8.34470 8.88390 9.04579 9.61467 11.10129
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.011685 B = 0.003442 C = 0.002947
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2395.570918 B = 8132.307282 C = 9499.632092
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.369 6.369
3 C 0.042 3.958
4 C 0.107 3.893
5 N -0.584 5.584
6 C 0.252 3.748
7 C -0.529 4.529
8 H 0.056 0.944
9 C 0.062 3.938
10 N -0.892 5.892
11 Si 0.897 3.103
12 H -0.281 1.281
13 H -0.285 1.285
14 H -0.275 1.275
15 C 0.505 3.495
16 O -0.512 6.512
17 C 0.039 3.961
18 O -0.277 6.277
19 C 0.108 3.892
20 C -0.189 4.189
21 C -0.057 4.057
22 C -0.115 4.115
23 C -0.136 4.136
24 C -0.112 4.112
25 C 0.064 3.936
26 F -0.129 7.129
27 H 0.035 0.965
28 H 0.036 0.964
29 H 0.085 0.915
30 H 0.054 0.946
31 H 0.043 0.957
32 H 0.098 0.902
33 H 0.079 0.921
34 H 0.049 0.951
35 H 0.041 0.959
36 H 0.263 0.737
37 H 0.089 0.911
38 H 0.085 0.915
39 H 0.138 0.862
40 H 0.074 0.926
41 H 0.069 0.931
42 H 0.068 0.932
43 H 0.132 0.868
44 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.908 23.372 3.176 24.877
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.288 6.288
3 C -0.036 4.036
4 C -0.017 4.017
5 N -0.317 5.317
6 C 0.133 3.867
7 C -0.568 4.568
8 H 0.074 0.926
9 C -0.140 4.140
10 N -0.531 5.531
11 Si 0.725 3.275
12 H -0.207 1.207
13 H -0.211 1.211
14 H -0.199 1.199
15 C 0.289 3.711
16 O -0.387 6.387
17 C -0.040 4.040
18 O -0.189 6.189
19 C 0.061 3.939
20 C -0.207 4.207
21 C -0.058 4.058
22 C -0.171 4.171
23 C -0.154 4.154
24 C -0.131 4.131
25 C 0.044 3.956
26 F -0.108 7.108
27 H 0.054 0.946
28 H 0.055 0.945
29 H 0.104 0.896
30 H 0.072 0.928
31 H 0.061 0.939
32 H 0.116 0.884
33 H 0.097 0.903
34 H 0.067 0.933
35 H 0.059 0.941
36 H 0.072 0.928
37 H 0.107 0.893
38 H 0.103 0.897
39 H 0.155 0.845
40 H 0.093 0.907
41 H 0.088 0.912
42 H 0.087 0.913
43 H 0.150 0.850
44 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -7.546 22.500 2.396 23.852
hybrid contribution 0.684 -0.161 0.379 0.798
sum -6.862 22.339 2.775 23.533
Atomic orbital electron populations
1.22717 0.81871 1.02756 0.99147 1.88110 1.18861 1.26656 1.95126
1.23119 0.95187 0.85730 0.99548 1.21590 0.91359 0.98921 0.89879
1.48130 1.64432 1.09902 1.09282 1.19374 0.96947 0.71204 0.99136
1.21456 0.97426 0.92291 1.45605 0.92574 1.24912 0.97413 0.96390
0.95294 1.69941 1.34364 1.01004 1.47806 0.86521 0.84629 0.78116
0.78283 1.20687 1.21115 1.19942 1.19669 0.79805 0.86692 0.84976
1.90742 1.44877 1.74052 1.29018 1.22824 1.01264 0.94490 0.85426
1.86293 1.82470 1.15617 1.34477 1.19151 0.97452 0.83699 0.93641
1.21055 1.07164 0.94284 0.98237 1.19750 0.97293 0.92965 0.95760
1.20812 1.01616 0.99401 0.95290 1.20762 1.02597 1.00000 0.92080
1.20990 1.00796 0.90774 1.00548 1.17019 1.06333 0.89173 0.83065
1.91535 1.88494 1.77590 1.53152 0.94614 0.94547 0.89637 0.92814
0.93868 0.88365 0.90315 0.93258 0.94118 0.92780 0.89333 0.89726
0.84474 0.90713 0.91182 0.91257 0.84999 0.84079
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.39 11.01 101.05 1.11 1.50 16
2 O -0.37 -6.09 9.53 -35.23 -0.34 -6.42 16
3 C 0.04 0.55 6.28 37.16 0.23 0.79 16
4 C 0.11 1.62 5.62 -4.04 -0.02 1.59 16
5 N -0.58 -12.27 2.42 -175.06 -0.42 -12.69 16
6 C 0.25 6.69 4.98 -5.19 -0.03 6.67 16
7 C -0.53 -15.20 9.39 -34.44 -0.32 -15.52 16
8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16
9 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16
10 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16
11 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16
12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16
13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
14 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16
15 C 0.50 10.79 7.75 -10.99 -0.09 10.70 16
16 O -0.51 -13.80 16.08 -14.35 -0.23 -14.03 16
17 C 0.04 0.59 3.77 36.00 0.14 0.73 16
18 O -0.28 -4.92 9.53 -39.52 -0.38 -5.30 16
19 C 0.11 1.55 6.69 -39.18 -0.26 1.28 16
20 C -0.19 -2.02 8.69 -39.45 -0.34 -2.36 16
21 C -0.06 -0.50 5.88 -104.63 -0.62 -1.12 16
22 C -0.11 -0.65 10.01 36.01 0.36 -0.29 16
23 C -0.14 -1.16 9.69 -39.57 -0.38 -1.54 16
24 C -0.11 -1.15 10.02 -39.54 -0.40 -1.54 16
25 C 0.06 0.90 7.31 -39.29 -0.29 0.61 16
26 F -0.13 -2.13 17.11 2.25 0.04 -2.09 16
27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16
28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16
29 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16
30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.04 0.53 7.30 -51.93 -0.38 0.15 16
32 H 0.10 1.58 8.07 -51.93 -0.42 1.16 16
33 H 0.08 0.87 6.44 -51.93 -0.33 0.53 16
34 H 0.05 1.35 7.12 -51.93 -0.37 0.98 16
35 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16
36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
37 H 0.09 1.10 6.92 -51.93 -0.36 0.74 16
38 H 0.08 1.01 6.79 -51.93 -0.35 0.66 16
39 H 0.14 1.17 6.30 -52.48 -0.33 0.84 16
40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16
41 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16
42 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16
43 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16
44 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16
LS Contribution 376.84 15.07 5.68 5.68
Total: -1.00 -37.22 376.84 -7.21 -44.43
By element:
Atomic # 1 Polarization: 2.58 SS G_CDS: -6.27 Total: -3.69 kcal
Atomic # 6 Polarization: 4.20 SS G_CDS: -1.00 Total: 3.20 kcal
Atomic # 7 Polarization: -39.29 SS G_CDS: 0.31 Total: -38.98 kcal
Atomic # 8 Polarization: -24.81 SS G_CDS: -0.94 Total: -25.75 kcal
Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal
Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal
Total LS contribution 5.68 Total: 5.68 kcal
Total: -37.22 -7.21 -44.43 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000134627209.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -87.980 kcal
(2) G-P(sol) polarization free energy of solvation -37.221 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.201 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.429 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.408 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds