Wall clock time and date at job start Tue Mar 31 2020 13:50:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42894 * 1
3 3 C 1.42900 * 114.00429 * 2 1
4 4 C 1.52997 * 109.47014 * 179.97438 * 3 2 1
5 5 N 1.46503 * 109.47451 * 65.00134 * 4 3 2
6 6 C 1.46504 * 119.99753 * 270.00245 * 5 4 3
7 7 C 1.50702 * 109.46701 * 269.99667 * 6 5 4
8 8 H 1.08006 * 120.00102 * 359.97438 * 7 6 5
9 9 C 1.37880 * 119.99886 * 180.02562 * 7 6 5
10 10 N 1.31508 * 119.99927 * 359.97438 * 9 7 6
11 11 Si 1.86802 * 119.99706 * 179.97438 * 9 7 6
12 12 H 1.48506 * 109.46939 * 90.00154 * 11 9 7
13 13 H 1.48500 * 109.46939 * 209.99851 * 11 9 7
14 14 H 1.48488 * 109.47453 * 329.99728 * 11 9 7
15 15 C 1.34779 * 120.00215 * 89.99322 * 5 4 3
16 16 O 1.21277 * 119.99702 * 180.02562 * 15 5 4
17 17 C 1.50697 * 120.00063 * 0.02562 * 15 5 4
18 18 O 1.42893 * 109.47063 * 180.02562 * 17 15 5
19 19 C 1.35958 * 116.99849 * 180.02562 * 18 17 15
20 20 C 1.38655 * 120.06374 * 0.02562 * 19 18 17
21 21 C 1.38177 * 119.97092 * 179.97438 * 20 19 18
22 22 C 1.50703 * 119.95723 * 179.97438 * 21 20 19
23 23 C 1.38267 * 120.09433 * 0.02562 * 21 20 19
24 24 C 1.38250 * 120.12767 * 359.95561 * 23 21 20
25 25 C 1.38338 * 120.03013 * 0.04595 * 24 23 21
26 26 F 1.35100 * 120.04992 * 180.25798 * 25 24 23
27 27 H 1.09003 * 109.47098 * 300.00938 * 1 2 3
28 28 H 1.09007 * 109.46649 * 60.00368 * 1 2 3
29 29 H 1.09000 * 109.47628 * 180.02562 * 1 2 3
30 30 H 1.08994 * 109.47014 * 59.99947 * 3 2 1
31 31 H 1.08997 * 109.46634 * 299.99376 * 3 2 1
32 32 H 1.08993 * 109.47505 * 304.99847 * 4 3 2
33 33 H 1.08998 * 109.47182 * 184.99601 * 4 3 2
34 34 H 1.09001 * 109.47433 * 29.98969 * 6 5 4
35 35 H 1.08995 * 109.47403 * 149.99469 * 6 5 4
36 36 H 0.97005 * 120.00182 * 179.97438 * 10 9 7
37 37 H 1.08997 * 109.47077 * 59.99708 * 17 15 5
38 38 H 1.09004 * 109.46681 * 299.99662 * 17 15 5
39 39 H 1.08005 * 120.01507 * 359.95751 * 20 19 18
40 40 H 1.09003 * 109.47192 * 89.99621 * 22 21 20
41 41 H 1.08999 * 109.47384 * 210.00325 * 22 21 20
42 42 H 1.09004 * 109.46808 * 330.00075 * 22 21 20
43 43 H 1.08000 * 119.93535 * 179.97438 * 23 21 20
44 44 H 1.08000 * 119.99054 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5354 1.1845 0.0006
5 7 3.9767 0.5638 -1.2509
6 6 4.1061 -0.8928 -1.3403
7 6 5.5016 -1.2985 -0.9411
8 1 6.2202 -0.5465 -0.6504
9 6 5.8611 -2.6295 -0.9481
10 7 4.9862 -3.5451 -1.3026
11 14 7.5911 -3.1322 -0.4540
12 1 7.6344 -3.3846 1.0089
13 1 7.9738 -4.3691 -1.1812
14 1 8.5401 -2.0428 -0.7967
15 6 4.2634 1.3327 -2.3201
16 8 4.6282 0.8187 -3.3562
17 6 4.1306 2.8309 -2.2280
18 8 4.4875 3.4186 -3.4807
19 6 4.4220 4.7738 -3.5676
20 6 4.0232 5.5218 -2.4704
21 6 3.9578 6.8990 -2.5607
22 6 3.5237 7.7117 -1.3681
23 6 4.2890 7.5327 -3.7442
24 6 4.6875 6.7908 -4.8406
25 6 4.7548 5.4117 -4.7559
26 9 5.1492 4.6867 -5.8255
27 1 -0.3633 0.5140 0.8899
28 1 -0.3633 0.5138 -0.8901
29 1 -0.3634 -1.0276 0.0005
30 1 1.6887 1.8463 0.8899
31 1 1.6887 1.8462 -0.8900
32 1 3.8508 0.5684 0.8426
33 1 3.9785 2.1763 0.0901
34 1 3.3857 -1.3634 -0.6712
35 1 3.9137 -1.2126 -2.3643
36 1 5.2393 -4.4816 -1.3078
37 1 4.7925 3.2071 -1.4480
38 1 3.0998 3.0901 -1.9861
39 1 3.7635 5.0281 -1.5455
40 1 4.3965 7.9743 -0.7703
41 1 3.0294 8.6215 -1.7088
42 1 2.8312 7.1269 -0.7626
43 1 4.2366 8.6093 -3.8121
44 1 4.9461 7.2881 -5.7638
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000134627209.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:50:23
Heat of formation + Delta-G solvation = -157.641353 kcal
Electronic energy + Delta-G solvation = -27768.606964 eV
Core-core repulsion = 23600.478993 eV
Total energy + Delta-G solvation = -4168.127970 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 325.152 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-49.82672 -41.51287 -40.47122 -38.86246 -38.47409 -36.59589 -34.83897 -33.31921
-31.61576 -31.12742 -30.19637 -28.44760 -27.32291 -27.09423 -24.93404 -24.07887
-23.41701 -22.63081 -20.26019 -19.36375 -18.66641 -18.26133 -18.12694 -17.64139
-17.54511 -17.19522 -16.90869 -16.66264 -16.36710 -16.13123 -15.83321 -15.45423
-15.23686 -15.17816 -14.78607 -14.41836 -14.23324 -14.19020 -13.93737 -13.57047
-13.35157 -13.06740 -12.99112 -12.82041 -12.80260 -12.73245 -12.56433 -12.49985
-12.21002 -12.11147 -12.01825 -11.87539 -11.70126 -10.73138 -10.63014 -10.52505
-9.83167 -9.51113 -9.17300 -8.20862 -6.35684 0.09969 0.24958 1.35140
1.39431 1.48211 1.55683 1.63158 2.36796 2.54977 2.58693 2.96846
3.09183 3.26888 3.39064 3.74564 3.77095 3.87949 3.95436 4.16601
4.17534 4.26239 4.30364 4.40792 4.46621 4.51361 4.54751 4.61719
4.76519 4.87895 4.92371 4.94197 4.95392 5.02807 5.13693 5.21258
5.26771 5.33877 5.52494 5.54139 5.71381 5.83045 6.07322 6.21770
6.35066 6.67389 6.74792 7.24148 7.38887 8.86712
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.011685 B = 0.003442 C = 0.002947
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2395.570918 B = 8132.307282 C = 9499.632092
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.419 6.419
3 C 0.041 3.959
4 C 0.097 3.903
5 N -0.586 5.586
6 C 0.273 3.727
7 C -0.546 4.546
8 H 0.055 0.945
9 C 0.005 3.995
10 N -0.928 5.928
11 Si 0.969 3.031
12 H -0.260 1.260
13 H -0.282 1.282
14 H -0.273 1.273
15 C 0.492 3.508
16 O -0.588 6.588
17 C 0.055 3.945
18 O -0.323 6.323
19 C 0.077 3.923
20 C -0.186 4.186
21 C -0.050 4.050
22 C -0.114 4.114
23 C -0.126 4.126
24 C -0.109 4.109
25 C 0.018 3.982
26 F -0.158 7.158
27 H 0.065 0.935
28 H 0.042 0.958
29 H 0.078 0.922
30 H 0.101 0.899
31 H 0.053 0.947
32 H 0.084 0.916
33 H 0.131 0.869
34 H 0.035 0.965
35 H -0.015 1.015
36 H 0.266 0.734
37 H 0.126 0.874
38 H 0.126 0.874
39 H 0.163 0.837
40 H 0.086 0.914
41 H 0.086 0.914
42 H 0.080 0.920
43 H 0.169 0.831
44 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.231 27.498 6.134 29.352
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.338 6.338
3 C -0.036 4.036
4 C -0.025 4.025
5 N -0.318 5.318
6 C 0.152 3.848
7 C -0.584 4.584
8 H 0.074 0.926
9 C -0.193 4.193
10 N -0.568 5.568
11 Si 0.793 3.207
12 H -0.185 1.185
13 H -0.208 1.208
14 H -0.198 1.198
15 C 0.279 3.721
16 O -0.468 6.468
17 C -0.023 4.023
18 O -0.237 6.237
19 C 0.031 3.969
20 C -0.205 4.205
21 C -0.050 4.050
22 C -0.170 4.170
23 C -0.144 4.144
24 C -0.127 4.127
25 C -0.002 4.002
26 F -0.137 7.137
27 H 0.084 0.916
28 H 0.061 0.939
29 H 0.097 0.903
30 H 0.119 0.881
31 H 0.071 0.929
32 H 0.103 0.897
33 H 0.149 0.851
34 H 0.053 0.947
35 H 0.003 0.997
36 H 0.075 0.925
37 H 0.144 0.856
38 H 0.144 0.856
39 H 0.181 0.819
40 H 0.105 0.895
41 H 0.105 0.895
42 H 0.099 0.901
43 H 0.186 0.814
44 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges -7.905 26.685 5.416 28.353
hybrid contribution 0.705 -1.311 -0.526 1.578
sum -7.200 25.374 4.890 26.826
Atomic orbital electron populations
1.22850 0.80015 1.03025 1.00876 1.88049 1.21163 1.29093 1.95542
1.23248 0.93176 0.84958 1.02180 1.22071 0.93532 1.00628 0.86260
1.48064 1.64099 1.07908 1.11720 1.18685 0.95805 0.75194 0.95136
1.21768 0.98283 0.92721 1.45660 0.92643 1.25891 1.01952 0.96407
0.95083 1.70078 1.36637 1.01436 1.48655 0.85398 0.78865 0.77495
0.78924 1.18459 1.20795 1.19827 1.20813 0.78004 0.89607 0.83646
1.90696 1.48207 1.76061 1.31805 1.22736 1.04493 0.89194 0.85868
1.86212 1.83733 1.18037 1.35691 1.19465 0.99842 0.82430 0.95141
1.21372 1.06215 0.95104 0.97792 1.20239 0.95320 0.92504 0.96986
1.20917 1.02443 0.99667 0.93987 1.21263 1.00359 1.01685 0.91122
1.21301 0.99984 0.89203 1.02215 1.17672 1.08984 0.90691 0.82857
1.91448 1.89212 1.78523 1.54527 0.91605 0.93897 0.90342 0.88108
0.92885 0.89725 0.85147 0.94678 0.99712 0.92499 0.85634 0.85647
0.81943 0.89522 0.89472 0.90094 0.81359 0.82202
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.66 11.01 113.37 1.25 1.91 16
2 O -0.42 -13.65 9.53 -148.98 -1.42 -15.07 16
3 C 0.04 0.97 6.28 71.98 0.45 1.42 16
4 C 0.10 2.75 5.62 86.38 0.49 3.23 16
5 N -0.59 -25.22 2.42 -826.16 -2.00 -27.22 16
6 C 0.27 15.43 4.98 85.63 0.43 15.86 16
7 C -0.55 -32.61 9.39 25.60 0.24 -32.37 16
8 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16
9 C 0.01 0.33 5.46 84.66 0.46 0.79 16
10 N -0.93 -58.49 13.29 21.45 0.28 -58.21 16
11 Si 0.97 46.43 29.54 68.60 2.03 48.46 16
12 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16
13 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16
14 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16
15 C 0.49 21.72 7.75 87.66 0.68 22.40 16
16 O -0.59 -34.09 16.08 16.02 0.26 -33.84 16
17 C 0.05 1.59 3.77 71.23 0.27 1.86 16
18 O -0.32 -11.73 9.53 -74.03 -0.71 -12.44 16
19 C 0.08 2.17 6.69 22.53 0.15 2.32 16
20 C -0.19 -3.37 8.69 22.35 0.19 -3.18 16
21 C -0.05 -0.66 5.88 -19.87 -0.12 -0.78 16
22 C -0.11 -0.65 10.01 71.24 0.71 0.06 16
23 C -0.13 -1.65 9.69 22.28 0.22 -1.44 16
24 C -0.11 -2.05 10.02 22.30 0.22 -1.82 16
25 C 0.02 0.50 7.31 22.46 0.16 0.67 16
26 F -0.16 -5.62 17.11 44.97 0.77 -4.85 16
27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
28 H 0.04 0.91 8.14 -2.38 -0.02 0.90 16
29 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16
30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16
31 H 0.05 1.14 7.30 -2.39 -0.02 1.12 16
32 H 0.08 2.64 8.07 -2.39 -0.02 2.62 16
33 H 0.13 2.28 6.44 -2.39 -0.02 2.27 16
34 H 0.04 2.06 7.12 -2.39 -0.02 2.04 16
35 H -0.02 -1.02 7.42 -2.39 -0.02 -1.04 16
36 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16
37 H 0.13 2.66 6.92 -2.39 -0.02 2.64 16
38 H 0.13 2.56 6.79 -2.39 -0.02 2.54 16
39 H 0.16 1.94 6.30 -2.91 -0.02 1.92 16
40 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16
41 H 0.09 0.26 8.08 -2.39 -0.02 0.24 16
42 H 0.08 0.33 8.08 -2.38 -0.02 0.31 16
43 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16
44 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16
Total: -1.00 -92.33 376.84 6.03 -86.30
By element:
Atomic # 1 Polarization: 4.92 SS G_CDS: 1.01 Total: 5.92 kcal
Atomic # 6 Polarization: 5.14 SS G_CDS: 5.81 Total: 10.94 kcal
Atomic # 7 Polarization: -83.71 SS G_CDS: -1.71 Total: -85.43 kcal
Atomic # 8 Polarization: -59.48 SS G_CDS: -1.87 Total: -61.35 kcal
Atomic # 9 Polarization: -5.62 SS G_CDS: 0.77 Total: -4.85 kcal
Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal
Total: -92.33 6.03 -86.30 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000134627209.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.340 kcal
(2) G-P(sol) polarization free energy of solvation -92.329 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.669 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.028 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.301 kcal
(6) G-S(sol) free energy of system = (1) + (5) -157.641 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds