Wall clock time and date at job start Tue Mar 31 2020 14:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38287 * 119.92498 * 59.72499 * 4 2 1 6 6 C 1.38103 * 120.07544 * 179.72708 * 5 4 2 7 7 C 1.38910 * 119.92428 * 0.54143 * 6 5 4 8 8 N 1.39675 * 120.07827 * 179.74811 * 7 6 5 9 9 C 1.46491 * 120.00216 * 154.98044 * 8 7 6 10 10 S 1.65604 * 119.99789 * 334.98798 * 8 7 6 11 11 O 1.42101 * 104.27452 * 206.07059 * 10 8 7 12 12 O 1.42105 * 104.27692 * 333.92043 * 10 8 7 13 13 C 1.81396 * 104.45137 * 89.99400 * 10 8 7 14 14 C 1.53003 * 109.46853 * 179.97438 * 13 10 8 15 15 C 1.52999 * 109.47226 * 179.97438 * 14 13 10 16 16 C 1.50699 * 109.47260 * 180.02562 * 15 14 13 17 17 H 1.07994 * 119.99938 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99596 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00295 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99656 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46841 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46977 * 120.00004 * 20 18 16 23 23 H 1.48502 * 109.46687 * 239.99973 * 20 18 16 24 24 C 1.38909 * 119.84779 * 359.73239 * 7 6 5 25 25 C 1.38099 * 119.93044 * 359.97438 * 24 7 6 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 33 33 H 1.08004 * 119.96348 * 359.97438 * 5 4 2 34 34 H 1.08005 * 120.03631 * 180.27369 * 6 5 4 35 35 H 1.08997 * 109.47259 * 90.00175 * 9 8 7 36 36 H 1.09003 * 109.47492 * 210.00374 * 9 8 7 37 37 H 1.09007 * 109.47353 * 330.00270 * 9 8 7 38 38 H 1.08999 * 109.47186 * 299.99560 * 13 10 8 39 39 H 1.08998 * 109.46934 * 60.00222 * 13 10 8 40 40 H 1.09003 * 109.47143 * 300.00381 * 14 13 10 41 41 H 1.09005 * 109.47007 * 60.00086 * 14 13 10 42 42 H 1.09004 * 109.47050 * 300.00674 * 15 14 13 43 43 H 1.09005 * 109.47029 * 60.00134 * 15 14 13 44 44 H 0.97000 * 119.99953 * 180.02562 * 19 18 16 45 45 H 1.08006 * 120.03388 * 179.97438 * 24 7 6 46 46 H 1.07999 * 119.97120 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6926 -0.2399 -2.4857 6 6 2.1558 -0.8852 -3.6154 7 6 2.9546 -2.0146 -3.4898 8 7 3.4206 -2.6729 -4.6302 9 6 4.6448 -3.4746 -4.5644 10 16 2.5891 -2.5467 -6.0569 11 8 2.9211 -3.7348 -6.7621 12 8 1.2509 -2.2800 -5.6601 13 6 3.3113 -1.0977 -6.8751 14 6 2.6188 -0.8742 -8.2210 15 6 3.2274 0.3483 -8.9109 16 6 2.5449 0.5688 -10.2363 17 1 1.7557 -0.0962 -10.5545 18 6 2.9281 1.6196 -11.0425 19 7 3.8888 2.4297 -10.6548 20 14 2.0816 1.8934 -12.6851 21 1 1.0421 0.8520 -12.8859 22 1 1.4469 3.2359 -12.6972 23 1 3.0833 1.8096 -13.7782 24 6 3.2893 -2.4879 -2.2274 25 6 2.8277 -1.8343 -1.1019 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.0676 0.6356 -2.5827 34 1 1.8937 -0.5146 -4.5954 35 1 4.3931 -4.5010 -4.2975 36 1 5.1396 -3.4628 -5.5356 37 1 5.3129 -3.0568 -3.8112 38 1 3.1742 -0.2188 -6.2452 39 1 4.3758 -1.2655 -7.0381 40 1 2.7561 -1.7532 -8.8507 41 1 1.5540 -0.7066 -8.0583 42 1 3.0896 1.2271 -8.2809 43 1 4.2922 0.1811 -9.0735 44 1 4.1581 3.1691 -11.2219 45 1 3.9099 -3.3660 -2.1263 46 1 3.0871 -2.2019 -0.1200 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152519238.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:13 Heat of formation + Delta-G solvation = -66.561532 kcal Electronic energy + Delta-G solvation = -25519.767089 eV Core-core repulsion = 21921.801812 eV Total energy + Delta-G solvation = -3597.965277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.01721 -37.19992 -37.08026 -35.88649 -34.75248 -34.35654 -32.24488 -31.17870 -29.22419 -27.89412 -27.33478 -26.55105 -23.88319 -22.97367 -22.83960 -20.65456 -20.14550 -19.22306 -17.90761 -17.23362 -16.78757 -15.98633 -15.71442 -15.59292 -15.15881 -14.58368 -14.48976 -14.37421 -14.23279 -13.96023 -13.67662 -13.43873 -13.05082 -12.84078 -12.65263 -12.62110 -12.34312 -12.31425 -12.09385 -12.00645 -11.87152 -11.82285 -11.42016 -11.32074 -11.27635 -10.96557 -10.93594 -10.90749 -10.75798 -10.52287 -10.27251 -10.00738 -9.43368 -9.15744 -9.02920 -8.43878 -8.05217 -6.08434 -4.11710 0.21865 1.26424 1.30700 2.49266 3.27740 3.35387 3.40218 3.59350 3.89825 4.13589 4.33284 4.40540 4.52397 4.60458 4.82749 4.90460 4.99843 5.01037 5.06137 5.20483 5.22491 5.25748 5.28044 5.32206 5.42439 5.47311 5.50627 5.61050 5.63870 5.67336 5.74580 5.80534 5.94402 6.02750 6.03602 6.16966 6.20549 6.36511 6.38222 6.48469 6.55848 6.80735 6.95110 7.53314 7.62262 7.89334 8.29205 8.94644 9.53297 11.02754 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013938 B = 0.002996 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.408283 B = 9343.169852 C =10605.208832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 C -0.146 4.146 4 C -0.106 4.106 5 C -0.076 4.076 6 C -0.152 4.152 7 C 0.173 3.827 8 N -0.947 5.947 9 C 0.084 3.916 10 S 2.586 3.414 11 O -0.950 6.950 12 O -0.944 6.944 13 C -0.606 4.606 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.149 4.149 25 C -0.091 4.091 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.261 0.739 45 H 0.126 0.874 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.274 -7.295 23.071 24.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.071 4.071 3 C -0.203 4.203 4 C -0.107 4.107 5 C -0.095 4.095 6 C -0.173 4.173 7 C 0.077 3.923 8 N -0.771 5.771 9 C -0.060 4.060 10 S 2.684 3.316 11 O -0.940 6.940 12 O -0.935 6.935 13 C -0.738 4.738 14 C -0.145 4.145 15 C -0.007 4.007 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.171 4.171 25 C -0.109 4.109 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.040 0.960 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.144 0.856 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.265 -7.831 22.684 24.000 hybrid contribution 0.209 0.675 -0.984 1.212 sum -0.056 -7.156 21.700 22.850 Atomic orbital electron populations 1.21881 0.94427 1.02073 1.01953 1.20062 0.95890 0.95947 0.95157 1.21874 1.01239 0.95195 1.01974 1.19794 0.99530 0.96784 0.94617 1.20742 0.98403 0.99311 0.91018 1.21098 1.00880 0.94883 1.00435 1.17498 0.96512 0.91711 0.86599 1.55733 1.38051 1.59224 1.24084 1.21665 0.84931 0.95386 1.04014 1.06063 0.74906 0.77504 0.73119 1.93583 1.84541 1.43868 1.72058 1.93615 1.33094 1.86480 1.80272 1.30612 1.13147 1.18709 1.11373 1.21539 0.99392 1.03425 0.90157 1.19070 0.96231 0.90569 0.94863 1.21277 1.19608 1.12569 1.03015 0.92286 1.25021 0.95088 0.95851 0.98401 1.69966 1.28983 1.16722 1.37681 0.86500 0.79547 0.78156 0.83632 1.19580 1.20902 1.20922 1.20800 1.04264 1.01336 0.90685 1.20834 0.97177 0.95006 0.97911 0.92239 0.92519 0.92557 0.90693 0.92259 0.92550 0.92529 0.85435 0.85268 0.91595 0.89968 0.90218 0.85119 0.85137 0.91467 0.91418 0.96021 0.96062 0.92915 0.85630 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.00 37.16 0.33 -0.78 16 2 C -0.05 -0.41 3.09 -91.77 -0.28 -0.69 16 3 C -0.15 -1.07 9.01 37.16 0.33 -0.74 16 4 C -0.11 -1.07 4.79 -104.59 -0.50 -1.57 16 5 C -0.08 -0.88 8.70 -39.61 -0.34 -1.23 16 6 C -0.15 -2.03 8.42 -39.38 -0.33 -2.36 16 7 C 0.17 2.21 6.04 -83.79 -0.51 1.70 16 8 N -0.95 -11.97 3.32 -65.40 -0.22 -12.19 16 9 C 0.08 0.80 9.20 59.84 0.55 1.35 16 10 S 2.59 40.05 4.74 -107.50 -0.51 39.54 16 11 O -0.95 -16.82 17.09 -57.54 -0.98 -17.81 16 12 O -0.94 -16.92 15.17 -57.54 -0.87 -17.79 16 13 C -0.61 -9.44 6.04 37.16 0.22 -9.21 16 14 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 15 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 16 C -0.53 -14.72 9.11 -34.44 -0.31 -15.03 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 20 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C -0.15 -1.58 9.13 -39.38 -0.36 -1.94 16 25 C -0.09 -0.87 9.66 -39.61 -0.38 -1.25 16 26 H 0.06 0.48 7.37 -51.93 -0.38 0.09 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 30 H 0.06 0.46 7.40 -51.93 -0.38 0.07 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.13 1.29 7.09 -52.48 -0.37 0.91 16 34 H 0.13 1.78 5.13 -52.48 -0.27 1.51 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.72 7.79 -51.93 -0.40 0.32 16 37 H 0.08 0.57 7.47 -51.92 -0.39 0.19 16 38 H 0.13 1.84 7.18 -51.92 -0.37 1.47 16 39 H 0.13 1.79 8.14 -51.93 -0.42 1.37 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 45 H 0.13 1.07 7.13 -52.48 -0.37 0.69 16 46 H 0.12 0.88 7.94 -52.49 -0.42 0.46 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -34.15 382.10 -10.60 -44.76 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -7.54 Total: -1.21 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: -1.95 Total: -31.84 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.52 Total: -37.84 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.86 Total: -35.60 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 40.05 SS G_CDS: -0.51 Total: 39.54 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.15 -10.60 -44.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152519238.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.806 kcal (2) G-P(sol) polarization free energy of solvation -34.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds