Wall clock time and date at job start Tue Mar 31 2020 14:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38287 * 119.92498 * 59.72499 * 4 2 1 6 6 C 1.38103 * 120.07544 * 179.72708 * 5 4 2 7 7 C 1.38910 * 119.92428 * 0.54143 * 6 5 4 8 8 N 1.39675 * 120.07827 * 179.74811 * 7 6 5 9 9 C 1.46491 * 120.00216 * 154.98044 * 8 7 6 10 10 S 1.65604 * 119.99789 * 334.98798 * 8 7 6 11 11 O 1.42101 * 104.27452 * 206.07059 * 10 8 7 12 12 O 1.42105 * 104.27692 * 333.92043 * 10 8 7 13 13 C 1.81396 * 104.45137 * 89.99400 * 10 8 7 14 14 C 1.53003 * 109.46853 * 179.97438 * 13 10 8 15 15 C 1.52999 * 109.47226 * 179.97438 * 14 13 10 16 16 C 1.50699 * 109.47260 * 180.02562 * 15 14 13 17 17 H 1.07994 * 119.99938 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99596 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00295 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99656 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46841 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46977 * 120.00004 * 20 18 16 23 23 H 1.48502 * 109.46687 * 239.99973 * 20 18 16 24 24 C 1.38909 * 119.84779 * 359.73239 * 7 6 5 25 25 C 1.38099 * 119.93044 * 359.97438 * 24 7 6 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 33 33 H 1.08004 * 119.96348 * 359.97438 * 5 4 2 34 34 H 1.08005 * 120.03631 * 180.27369 * 6 5 4 35 35 H 1.08997 * 109.47259 * 90.00175 * 9 8 7 36 36 H 1.09003 * 109.47492 * 210.00374 * 9 8 7 37 37 H 1.09007 * 109.47353 * 330.00270 * 9 8 7 38 38 H 1.08999 * 109.47186 * 299.99560 * 13 10 8 39 39 H 1.08998 * 109.46934 * 60.00222 * 13 10 8 40 40 H 1.09003 * 109.47143 * 300.00381 * 14 13 10 41 41 H 1.09005 * 109.47007 * 60.00086 * 14 13 10 42 42 H 1.09004 * 109.47050 * 300.00674 * 15 14 13 43 43 H 1.09005 * 109.47029 * 60.00134 * 15 14 13 44 44 H 0.97000 * 119.99953 * 180.02562 * 19 18 16 45 45 H 1.08006 * 120.03388 * 179.97438 * 24 7 6 46 46 H 1.07999 * 119.97120 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6926 -0.2399 -2.4857 6 6 2.1558 -0.8852 -3.6154 7 6 2.9546 -2.0146 -3.4898 8 7 3.4206 -2.6729 -4.6302 9 6 4.6448 -3.4746 -4.5644 10 16 2.5891 -2.5467 -6.0569 11 8 2.9211 -3.7348 -6.7621 12 8 1.2509 -2.2800 -5.6601 13 6 3.3113 -1.0977 -6.8751 14 6 2.6188 -0.8742 -8.2210 15 6 3.2274 0.3483 -8.9109 16 6 2.5449 0.5688 -10.2363 17 1 1.7557 -0.0962 -10.5545 18 6 2.9281 1.6196 -11.0425 19 7 3.8888 2.4297 -10.6548 20 14 2.0816 1.8934 -12.6851 21 1 1.0421 0.8520 -12.8859 22 1 1.4469 3.2359 -12.6972 23 1 3.0833 1.8096 -13.7782 24 6 3.2893 -2.4879 -2.2274 25 6 2.8277 -1.8343 -1.1019 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.0676 0.6356 -2.5827 34 1 1.8937 -0.5146 -4.5954 35 1 4.3931 -4.5010 -4.2975 36 1 5.1396 -3.4628 -5.5356 37 1 5.3129 -3.0568 -3.8112 38 1 3.1742 -0.2188 -6.2452 39 1 4.3758 -1.2655 -7.0381 40 1 2.7561 -1.7532 -8.8507 41 1 1.5540 -0.7066 -8.0583 42 1 3.0896 1.2271 -8.2809 43 1 4.2922 0.1811 -9.0735 44 1 4.1581 3.1691 -11.2219 45 1 3.9099 -3.3660 -2.1263 46 1 3.0871 -2.2019 -0.1200 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152519238.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:12 Heat of formation + Delta-G solvation = -86.684705 kcal Electronic energy + Delta-G solvation = -25520.639695 eV Core-core repulsion = 21921.801812 eV Total energy + Delta-G solvation = -3598.837883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.85144 -38.46783 -37.94387 -37.21531 -36.54350 -35.11344 -34.22574 -32.01972 -30.01343 -29.74102 -27.91440 -27.37711 -25.71325 -23.91530 -23.67672 -22.34693 -20.93133 -20.30139 -19.06655 -18.62464 -18.21208 -17.47685 -16.88324 -16.52505 -16.45958 -16.05648 -15.78174 -15.29541 -15.22345 -14.73000 -14.54424 -14.33583 -14.23811 -14.11988 -13.90476 -13.65399 -13.58143 -13.42593 -13.32139 -13.20633 -13.06480 -12.92458 -12.80457 -12.77003 -12.67024 -12.21887 -12.10116 -11.99527 -11.81801 -11.62472 -11.50796 -11.42135 -11.30138 -10.90585 -10.60386 -9.87548 -8.93283 -8.24912 -6.36184 -1.02014 0.40720 0.46519 1.38530 1.38577 1.39587 1.52563 2.37957 2.55615 2.85164 2.94258 3.08747 3.40971 3.67624 3.75281 3.84804 3.90343 4.02215 4.22763 4.29547 4.39845 4.46306 4.49674 4.51910 4.57489 4.60155 4.68161 4.80523 4.85042 4.86111 4.86639 4.99652 5.01196 5.06158 5.10198 5.18087 5.37360 5.41829 5.43497 5.45120 5.52927 5.57722 5.62475 5.76222 5.78507 6.12095 6.16315 6.79257 7.33386 8.86807 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013938 B = 0.002996 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.408283 B = 9343.169852 C =10605.208832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C -0.145 4.145 4 C -0.106 4.106 5 C -0.089 4.089 6 C -0.181 4.181 7 C 0.151 3.849 8 N -0.942 5.942 9 C 0.070 3.930 10 S 2.611 3.389 11 O -0.973 6.973 12 O -0.972 6.972 13 C -0.606 4.606 14 C -0.105 4.105 15 C 0.032 3.968 16 C -0.552 4.552 17 H 0.061 0.939 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.963 3.037 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.147 4.147 25 C -0.088 4.088 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.131 0.869 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.003 0.997 43 H 0.004 0.996 44 H 0.265 0.735 45 H 0.151 0.849 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.552 -8.088 24.840 26.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.068 4.068 3 C -0.202 4.202 4 C -0.107 4.107 5 C -0.108 4.108 6 C -0.202 4.202 7 C 0.055 3.945 8 N -0.768 5.768 9 C -0.073 4.073 10 S 2.709 3.291 11 O -0.963 6.963 12 O -0.963 6.963 13 C -0.737 4.737 14 C -0.144 4.144 15 C -0.006 4.006 16 C -0.590 4.590 17 H 0.079 0.921 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.788 3.212 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.201 1.201 24 C -0.168 4.168 25 C -0.107 4.107 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.149 0.851 34 H 0.132 0.868 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.160 0.840 39 H 0.168 0.832 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.021 0.979 43 H 0.023 0.977 44 H 0.074 0.926 45 H 0.168 0.832 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.011 -8.626 24.446 25.924 hybrid contribution 0.152 0.934 -1.408 1.696 sum 0.162 -7.693 23.038 24.289 Atomic orbital electron populations 1.21884 0.94371 1.01870 1.02240 1.20120 0.95889 0.96102 0.94708 1.21869 1.01136 0.94991 1.02225 1.20113 0.98919 0.96900 0.94733 1.20904 0.98782 0.99659 0.91447 1.21190 1.02405 0.96180 1.00423 1.17702 0.97452 0.92017 0.87297 1.55385 1.38932 1.59612 1.22842 1.22029 0.84123 0.95753 1.05396 1.05061 0.74232 0.76514 0.73303 1.93546 1.84846 1.44684 1.73241 1.93574 1.35167 1.86659 1.80860 1.30552 1.13928 1.19992 1.09238 1.21337 0.99550 1.01243 0.92286 1.18953 0.95345 0.92047 0.94258 1.21744 1.19953 1.12885 1.04432 0.92123 1.25938 0.95730 0.95534 1.02320 1.70076 1.30292 1.17297 1.39248 0.85422 0.78628 0.78307 0.78866 1.18771 1.20188 1.20147 1.21122 1.03989 1.01894 0.89834 1.21240 0.96079 0.94308 0.99066 0.93236 0.92955 0.91048 0.88855 0.93202 0.91163 0.92660 0.85069 0.86829 0.90498 0.89451 0.87544 0.84009 0.83235 0.91223 0.91430 0.97895 0.97726 0.92586 0.83181 0.82756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.00 71.98 0.65 -1.35 16 2 C -0.05 -0.68 3.09 -11.54 -0.04 -0.71 16 3 C -0.14 -1.89 9.01 71.98 0.65 -1.24 16 4 C -0.11 -1.95 4.79 -19.84 -0.09 -2.04 16 5 C -0.09 -2.06 8.70 22.25 0.19 -1.87 16 6 C -0.18 -4.90 8.42 22.40 0.19 -4.71 16 7 C 0.15 3.71 6.04 38.21 0.23 3.94 16 8 N -0.94 -22.85 3.32 -360.82 -1.20 -24.05 16 9 C 0.07 1.18 9.20 127.77 1.18 2.36 16 10 S 2.61 81.05 4.74 -56.49 -0.27 80.78 16 11 O -0.97 -34.21 17.09 -127.65 -2.18 -36.39 16 12 O -0.97 -35.61 15.17 -127.65 -1.94 -37.55 16 13 C -0.61 -19.12 6.04 71.98 0.43 -18.69 16 14 C -0.10 -4.32 5.16 30.59 0.16 -4.16 16 15 C 0.03 1.68 4.97 29.85 0.15 1.82 16 16 C -0.55 -31.50 9.11 25.60 0.23 -31.27 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 18 C 0.00 0.18 5.46 84.66 0.46 0.64 16 19 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 20 Si 0.96 44.24 29.54 68.60 2.03 46.26 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 C -0.15 -2.75 9.13 22.40 0.20 -2.54 16 25 C -0.09 -1.45 9.66 22.25 0.21 -1.23 16 26 H 0.05 0.77 7.37 -2.39 -0.02 0.75 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.09 0.95 7.87 -2.39 -0.02 0.93 16 30 H 0.05 0.74 7.40 -2.39 -0.02 0.72 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.13 2.75 7.09 -2.91 -0.02 2.73 16 34 H 0.11 3.32 5.13 -2.91 -0.01 3.30 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.38 7.79 -2.39 -0.02 1.36 16 37 H 0.11 1.22 7.47 -2.38 -0.02 1.20 16 38 H 0.14 4.13 7.18 -2.39 -0.02 4.12 16 39 H 0.15 4.07 8.14 -2.39 -0.02 4.06 16 40 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 41 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 42 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 44 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 45 H 0.15 2.00 7.13 -2.91 -0.02 1.98 16 46 H 0.15 1.53 7.94 -2.91 -0.02 1.51 16 Total: -1.00 -74.20 382.10 2.48 -71.72 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.95 Total: 15.76 kcal Atomic # 6 Polarization: -65.88 SS G_CDS: 4.81 Total: -61.07 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -0.91 Total: -79.52 kcal Atomic # 8 Polarization: -69.83 SS G_CDS: -4.12 Total: -73.94 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 81.05 SS G_CDS: -0.27 Total: 80.78 kcal Total: -74.20 2.48 -71.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152519238.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.964 kcal (2) G-P(sol) polarization free energy of solvation -74.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds