Wall clock time and date at job start Tue Mar 31 2020 14:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35153 * 125.48142 * 2 1 4 4 C 1.40310 * 107.20468 * 180.02562 * 3 2 1 5 5 C 1.37956 * 106.53064 * 359.97438 * 4 3 2 6 6 C 1.41600 * 126.10815 * 179.97438 * 5 4 3 7 7 C 1.35622 * 120.00256 * 180.02562 * 6 5 4 8 8 C 1.41550 * 120.00125 * 179.97438 * 7 6 5 9 9 O 1.21768 * 120.00109 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99688 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99645 * 175.11074 * 10 8 7 12 12 H 1.08995 * 109.46962 * 326.60914 * 11 10 8 13 13 C 1.52998 * 109.47431 * 86.61157 * 11 10 8 14 14 C 1.50700 * 109.47260 * 185.72035 * 13 11 10 15 15 H 1.07996 * 119.99831 * 355.54681 * 14 13 11 16 16 C 1.37875 * 119.99764 * 175.55253 * 14 13 11 17 17 N 1.31511 * 120.00508 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99855 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47291 * 59.99508 * 18 16 14 20 20 H 1.48498 * 109.47291 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47094 * 299.99530 * 18 16 14 22 22 C 1.50703 * 109.47064 * 206.60889 * 11 10 8 23 23 C 1.38235 * 119.99950 * 319.72731 * 22 11 10 24 24 C 1.38236 * 119.99824 * 179.78564 * 23 22 11 25 25 C 1.38235 * 120.00093 * 0.44530 * 24 23 22 26 26 C 1.38234 * 119.99718 * 359.80798 * 25 24 23 27 27 C 1.38233 * 120.00455 * 359.97438 * 26 25 24 28 28 O 1.34013 * 125.48252 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.46885 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46670 * 299.99722 * 1 2 3 31 31 H 1.09002 * 109.47045 * 59.99585 * 1 2 3 32 32 H 1.08005 * 126.40015 * 359.97438 * 3 2 1 33 33 H 1.08002 * 126.73826 * 180.02562 * 4 3 2 34 34 H 1.08002 * 119.99874 * 0.03081 * 6 5 4 35 35 H 1.08002 * 119.99870 * 0.02562 * 7 6 5 36 36 H 0.96997 * 120.00353 * 355.10950 * 10 8 7 37 37 H 1.09011 * 109.46821 * 305.71894 * 13 11 10 38 38 H 1.08998 * 109.47341 * 65.71428 * 13 11 10 39 39 H 0.97002 * 120.00616 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.00040 * 359.97438 * 23 22 11 41 41 H 1.08007 * 120.00175 * 180.27132 * 24 23 22 42 42 H 1.07999 * 120.00216 * 179.83490 * 25 24 23 43 43 H 1.08002 * 119.99586 * 180.02562 * 26 25 24 44 44 H 1.07994 * 120.00222 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2915 1.1006 0.0000 4 6 3.6239 0.6605 -0.0006 5 6 3.5818 -0.7184 -0.0004 6 6 4.6999 -1.5873 -0.0013 7 6 4.5146 -2.9308 -0.0014 8 6 5.6323 -3.7994 -0.0029 9 8 6.7601 -3.3404 -0.0036 10 7 5.4480 -5.1345 -0.0025 11 6 6.6001 -6.0329 -0.1122 12 1 7.3621 -5.5715 -0.7402 13 6 7.1769 -6.2950 1.2804 14 6 8.4428 -7.1032 1.1559 15 1 8.7617 -7.4614 0.1883 16 6 9.1936 -7.3853 2.2774 17 7 8.8055 -6.9487 3.4556 18 14 10.7623 -8.3876 2.1232 19 1 11.7119 -7.6856 1.2228 20 1 11.3800 -8.5498 3.4638 21 1 10.4425 -9.7240 1.5602 22 6 6.1633 -7.3370 -0.7285 23 6 4.9549 -7.9022 -0.3663 24 6 4.5523 -9.0961 -0.9349 25 6 5.3622 -9.7295 -1.8589 26 6 6.5730 -9.1669 -2.2171 27 6 6.9737 -7.9707 -1.6519 28 8 2.2849 -1.0913 -0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.9557 2.1271 -0.0004 33 1 4.5087 1.2798 -0.0004 34 1 5.7002 -1.1802 -0.0018 35 1 3.5143 -3.3380 -0.0013 36 1 4.5528 -5.5006 0.0704 37 1 7.3988 -5.3448 1.7665 38 1 6.4505 -6.8471 1.8766 39 1 9.3339 -7.1468 4.2445 40 1 4.3240 -7.4094 0.3587 41 1 3.6061 -9.5355 -0.6552 42 1 5.0489 -10.6636 -2.3011 43 1 7.2056 -9.6615 -2.9393 44 1 7.9198 -7.5314 -1.9315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153448773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:34 Heat of formation + Delta-G solvation = 12.128318 kcal Electronic energy + Delta-G solvation = -25878.322582 eV Core-core repulsion = 22148.325602 eV Total energy + Delta-G solvation = -3729.996980 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.75413 -39.74608 -38.58483 -35.27743 -34.18607 -33.46722 -32.80302 -31.57086 -30.90065 -30.41644 -28.62610 -27.15466 -24.91972 -23.03178 -22.34524 -22.06236 -22.00088 -20.64318 -19.67399 -19.37342 -17.36203 -17.02448 -16.46045 -16.31287 -15.89453 -15.28797 -14.78030 -14.70108 -14.51978 -14.23761 -14.12291 -13.56986 -13.46445 -13.39678 -13.16700 -12.95912 -12.78499 -12.66564 -12.47943 -12.25762 -12.11105 -12.00656 -11.48814 -11.12815 -10.80808 -10.77635 -10.63910 -10.60381 -10.06369 -9.95071 -9.85582 -9.59665 -9.08915 -8.52092 -8.46537 -8.30691 -8.07327 -7.89337 -5.95768 -3.97317 0.42893 1.82604 1.85755 1.94432 2.62639 2.64773 3.37141 3.40865 3.43067 3.74729 3.79369 4.28589 4.44627 4.51008 4.68071 4.77762 4.94968 5.08104 5.13350 5.25615 5.28750 5.31040 5.37844 5.41724 5.45176 5.49622 5.53267 5.61128 5.91607 5.92585 5.99482 6.01719 6.14459 6.27624 6.33901 6.39804 6.52640 6.75865 6.84731 6.89630 6.91268 6.92282 7.17702 7.44108 7.65342 7.75090 8.02325 8.05865 8.39773 8.71516 9.07040 9.65423 11.15916 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012349 B = 0.002854 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.932144 B = 9809.822245 C =11403.938679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.002 4.002 3 C -0.216 4.216 4 C -0.167 4.167 5 C -0.001 4.001 6 C -0.007 4.007 7 C -0.189 4.189 8 C 0.541 3.459 9 O -0.539 6.539 10 N -0.717 5.717 11 C 0.180 3.820 12 H 0.089 0.911 13 C 0.025 3.975 14 C -0.513 4.513 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.049 4.049 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.135 4.135 26 C -0.121 4.121 27 C -0.099 4.099 28 O -0.164 6.164 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.162 0.838 35 H 0.126 0.874 36 H 0.392 0.608 37 H 0.032 0.968 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.291 9.467 -9.633 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 C -0.235 4.235 4 C -0.187 4.187 5 C -0.050 4.050 6 C -0.026 4.026 7 C -0.210 4.210 8 C 0.330 3.670 9 O -0.418 6.418 10 N -0.367 5.367 11 C 0.077 3.923 12 H 0.107 0.893 13 C -0.012 4.012 14 C -0.552 4.552 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.049 4.049 23 C -0.138 4.138 24 C -0.140 4.140 25 C -0.153 4.153 26 C -0.139 4.139 27 C -0.118 4.118 28 O -0.061 6.061 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.179 0.821 35 H 0.144 0.856 36 H 0.227 0.773 37 H 0.051 0.949 38 H 0.033 0.967 39 H 0.070 0.930 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.525 9.462 -9.459 21.263 hybrid contribution 0.526 -0.730 0.254 0.935 sum -15.999 8.733 -9.206 20.420 Atomic orbital electron populations 1.20368 0.84971 1.04291 1.03691 1.22690 0.94192 0.84126 1.04304 1.21481 0.92756 0.99470 1.09797 1.22325 0.98432 0.93215 1.04682 1.19890 0.81892 0.93575 1.09607 1.20657 0.95456 0.92220 0.94308 1.22213 0.99532 0.94438 1.04833 1.16894 0.89373 0.82784 0.77901 1.90863 1.25029 1.76351 1.49592 1.46211 1.10647 1.06000 1.73824 1.20339 0.86136 0.84894 1.00920 0.89320 1.19415 0.95566 0.97822 0.88431 1.21043 1.07220 1.33138 0.93766 0.92369 1.24952 0.97770 0.96051 0.95379 1.69954 1.39084 1.45867 0.98413 0.86683 0.83682 0.80704 0.77132 1.20165 1.21349 1.20248 1.19965 0.93713 0.96797 0.94440 1.20837 0.96777 0.96321 0.99849 1.20977 0.99620 0.95700 0.97660 1.20979 0.95339 0.99817 0.99203 1.21045 0.96517 0.95994 1.00341 1.20991 0.99124 0.95565 0.96106 1.84049 1.16434 1.34751 1.70826 0.90390 0.89452 0.89495 0.83126 0.82618 0.82076 0.85580 0.77342 0.94924 0.96668 0.92994 0.86721 0.86717 0.86871 0.86604 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.41 36.01 0.37 -0.05 16 2 C 0.00 -0.01 7.30 -35.40 -0.26 -0.27 16 3 C -0.22 -2.01 10.76 -39.90 -0.43 -2.44 16 4 C -0.17 -1.77 10.90 -38.91 -0.42 -2.19 16 5 C 0.00 -0.01 6.84 -38.40 -0.26 -0.27 16 6 C -0.01 -0.09 9.39 -39.24 -0.37 -0.46 16 7 C -0.19 -2.73 9.41 -39.26 -0.37 -3.10 16 8 C 0.54 9.94 7.53 -15.00 -0.11 9.83 16 9 O -0.54 -12.08 15.80 5.13 0.08 -12.00 16 10 N -0.72 -12.73 5.00 -57.85 -0.29 -13.02 16 11 C 0.18 3.80 2.19 -69.08 -0.15 3.65 16 12 H 0.09 2.02 7.46 -51.93 -0.39 1.63 16 13 C 0.03 0.67 4.73 -27.88 -0.13 0.53 16 14 C -0.51 -14.47 8.64 -34.44 -0.30 -14.77 16 15 H 0.06 1.57 6.43 -52.49 -0.34 1.23 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 18 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C -0.05 -0.92 4.49 -104.62 -0.47 -1.39 16 23 C -0.12 -1.99 9.06 -39.58 -0.36 -2.35 16 24 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 25 C -0.14 -1.96 10.05 -39.58 -0.40 -2.36 16 26 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 27 C -0.10 -1.79 8.63 -39.58 -0.34 -2.13 16 28 O -0.16 -1.99 10.18 4.70 0.05 -1.94 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.16 2.15 7.46 -52.49 -0.39 1.76 16 35 H 0.13 1.53 7.72 -52.49 -0.41 1.13 16 36 H 0.39 5.72 6.85 -40.82 -0.28 5.44 16 37 H 0.03 0.96 8.14 -51.92 -0.42 0.54 16 38 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.11 1.72 6.91 -52.49 -0.36 1.36 16 41 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 42 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.12 2.16 7.83 -52.49 -0.41 1.75 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -34.88 380.96 -9.53 -44.41 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.94 Total: 6.93 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -4.89 Total: -20.59 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.45 Total: -39.65 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.13 Total: -13.94 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.88 -9.53 -44.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153448773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.538 kcal (2) G-P(sol) polarization free energy of solvation -34.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds