Wall clock time and date at job start Tue Mar 31 2020 14:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35153 * 125.48142 * 2 1 4 4 C 1.40310 * 107.20468 * 180.02562 * 3 2 1 5 5 C 1.37956 * 106.53064 * 359.97438 * 4 3 2 6 6 C 1.41600 * 126.10815 * 179.97438 * 5 4 3 7 7 C 1.35622 * 120.00256 * 180.02562 * 6 5 4 8 8 C 1.41550 * 120.00125 * 179.97438 * 7 6 5 9 9 O 1.21768 * 120.00109 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99688 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99645 * 175.11074 * 10 8 7 12 12 H 1.08995 * 109.46962 * 326.60914 * 11 10 8 13 13 C 1.52998 * 109.47431 * 86.61157 * 11 10 8 14 14 C 1.50700 * 109.47260 * 185.72035 * 13 11 10 15 15 H 1.07996 * 119.99831 * 355.54681 * 14 13 11 16 16 C 1.37875 * 119.99764 * 175.55253 * 14 13 11 17 17 N 1.31511 * 120.00508 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99855 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47291 * 59.99508 * 18 16 14 20 20 H 1.48498 * 109.47291 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47094 * 299.99530 * 18 16 14 22 22 C 1.50703 * 109.47064 * 206.60889 * 11 10 8 23 23 C 1.38235 * 119.99950 * 319.72731 * 22 11 10 24 24 C 1.38236 * 119.99824 * 179.78564 * 23 22 11 25 25 C 1.38235 * 120.00093 * 0.44530 * 24 23 22 26 26 C 1.38234 * 119.99718 * 359.80798 * 25 24 23 27 27 C 1.38233 * 120.00455 * 359.97438 * 26 25 24 28 28 O 1.34013 * 125.48252 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.46885 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46670 * 299.99722 * 1 2 3 31 31 H 1.09002 * 109.47045 * 59.99585 * 1 2 3 32 32 H 1.08005 * 126.40015 * 359.97438 * 3 2 1 33 33 H 1.08002 * 126.73826 * 180.02562 * 4 3 2 34 34 H 1.08002 * 119.99874 * 0.03081 * 6 5 4 35 35 H 1.08002 * 119.99870 * 0.02562 * 7 6 5 36 36 H 0.96997 * 120.00353 * 355.10950 * 10 8 7 37 37 H 1.09011 * 109.46821 * 305.71894 * 13 11 10 38 38 H 1.08998 * 109.47341 * 65.71428 * 13 11 10 39 39 H 0.97002 * 120.00616 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.00040 * 359.97438 * 23 22 11 41 41 H 1.08007 * 120.00175 * 180.27132 * 24 23 22 42 42 H 1.07999 * 120.00216 * 179.83490 * 25 24 23 43 43 H 1.08002 * 119.99586 * 180.02562 * 26 25 24 44 44 H 1.07994 * 120.00222 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2915 1.1006 0.0000 4 6 3.6239 0.6605 -0.0006 5 6 3.5818 -0.7184 -0.0004 6 6 4.6999 -1.5873 -0.0013 7 6 4.5146 -2.9308 -0.0014 8 6 5.6323 -3.7994 -0.0029 9 8 6.7601 -3.3404 -0.0036 10 7 5.4480 -5.1345 -0.0025 11 6 6.6001 -6.0329 -0.1122 12 1 7.3621 -5.5715 -0.7402 13 6 7.1769 -6.2950 1.2804 14 6 8.4428 -7.1032 1.1559 15 1 8.7617 -7.4614 0.1883 16 6 9.1936 -7.3853 2.2774 17 7 8.8055 -6.9487 3.4556 18 14 10.7623 -8.3876 2.1232 19 1 11.7119 -7.6856 1.2228 20 1 11.3800 -8.5498 3.4638 21 1 10.4425 -9.7240 1.5602 22 6 6.1633 -7.3370 -0.7285 23 6 4.9549 -7.9022 -0.3663 24 6 4.5523 -9.0961 -0.9349 25 6 5.3622 -9.7295 -1.8589 26 6 6.5730 -9.1669 -2.2171 27 6 6.9737 -7.9707 -1.6519 28 8 2.2849 -1.0913 -0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.9557 2.1271 -0.0004 33 1 4.5087 1.2798 -0.0004 34 1 5.7002 -1.1802 -0.0018 35 1 3.5143 -3.3380 -0.0013 36 1 4.5528 -5.5006 0.0704 37 1 7.3988 -5.3448 1.7665 38 1 6.4505 -6.8471 1.8766 39 1 9.3339 -7.1468 4.2445 40 1 4.3240 -7.4094 0.3587 41 1 3.6061 -9.5355 -0.6552 42 1 5.0489 -10.6636 -2.3011 43 1 7.2056 -9.6615 -2.9393 44 1 7.9198 -7.5314 -1.9315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153448773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:33 Heat of formation + Delta-G solvation = -8.535796 kcal Electronic energy + Delta-G solvation = -25879.218645 eV Core-core repulsion = 22148.325602 eV Total energy + Delta-G solvation = -3730.893043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.58599 -41.22808 -39.92034 -36.82572 -35.32070 -34.87920 -34.25825 -32.86010 -31.94528 -31.64843 -30.37734 -28.22858 -26.56256 -24.34760 -23.87152 -23.34290 -22.88146 -21.72081 -21.17707 -20.57512 -18.72630 -18.59009 -17.81820 -17.29608 -17.09100 -16.69498 -16.66487 -15.99929 -15.79782 -15.55060 -15.51423 -14.94155 -14.55829 -14.21993 -14.17900 -14.09246 -13.90930 -13.89975 -13.80270 -13.56365 -13.26920 -13.15885 -12.92479 -12.73056 -12.68139 -12.51516 -12.03713 -11.88501 -11.67450 -11.63573 -11.41752 -10.99928 -10.77949 -10.56856 -10.05726 -9.71358 -9.46811 -8.85705 -8.19720 -6.29101 -0.61761 0.54369 0.59894 1.08279 1.36534 1.40810 1.47684 1.67556 1.86031 2.29542 2.44472 2.45730 2.99893 3.14974 3.67306 3.84404 3.87108 3.94466 4.03267 4.07421 4.23864 4.24348 4.34502 4.49131 4.49948 4.66798 4.72157 4.74262 4.78353 4.81336 4.82295 4.87967 5.10788 5.12440 5.14799 5.21751 5.24459 5.30247 5.46686 5.54527 5.55406 5.65327 5.68364 5.74557 5.89811 6.08705 6.20192 6.22260 6.60424 6.83580 7.28368 7.38297 8.92820 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012349 B = 0.002854 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.932144 B = 9809.822245 C =11403.938679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.006 3.994 3 C -0.227 4.227 4 C -0.151 4.151 5 C -0.045 4.045 6 C 0.023 3.977 7 C -0.218 4.218 8 C 0.540 3.460 9 O -0.593 6.593 10 N -0.709 5.709 11 C 0.197 3.803 12 H 0.061 0.939 13 C 0.039 3.961 14 C -0.525 4.525 15 H 0.066 0.934 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.961 3.039 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.263 1.263 22 C -0.075 4.075 23 C -0.130 4.130 24 C -0.119 4.119 25 C -0.128 4.128 26 C -0.122 4.122 27 C -0.123 4.123 28 O -0.180 6.180 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.181 0.819 33 H 0.174 0.826 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.409 0.591 37 H -0.017 1.017 38 H -0.004 1.004 39 H 0.262 0.738 40 H 0.123 0.877 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.143 0.857 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.644 8.846 -11.025 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.045 4.045 3 C -0.246 4.246 4 C -0.170 4.170 5 C -0.093 4.093 6 C 0.003 3.997 7 C -0.239 4.239 8 C 0.332 3.668 9 O -0.477 6.477 10 N -0.360 5.360 11 C 0.093 3.907 12 H 0.079 0.921 13 C 0.001 3.999 14 C -0.564 4.564 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.785 3.215 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.187 1.187 22 C -0.076 4.076 23 C -0.148 4.148 24 C -0.136 4.136 25 C -0.146 4.146 26 C -0.140 4.140 27 C -0.142 4.142 28 O -0.078 6.078 29 H 0.098 0.902 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.198 0.802 33 H 0.191 0.809 34 H 0.172 0.828 35 H 0.166 0.834 36 H 0.246 0.754 37 H 0.001 0.999 38 H 0.014 0.986 39 H 0.071 0.929 40 H 0.141 0.859 41 H 0.167 0.833 42 H 0.169 0.831 43 H 0.161 0.839 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.921 8.826 -10.869 23.538 hybrid contribution 1.071 -0.342 0.662 1.304 sum -17.851 8.484 -10.207 22.244 Atomic orbital electron populations 1.20625 0.81998 1.05156 1.05659 1.23655 0.95911 0.83639 1.01336 1.21894 0.91897 1.00939 1.09843 1.22766 1.00039 0.92654 1.01534 1.19770 0.81939 0.94073 1.13530 1.20694 0.95978 0.92122 0.90933 1.21949 0.98772 0.94125 1.09031 1.17508 0.89763 0.83099 0.76410 1.90820 1.27299 1.77092 1.52462 1.46038 1.10621 1.05735 1.73565 1.19749 0.86737 0.86897 0.97348 0.92068 1.19161 0.95096 0.94624 0.90973 1.21453 1.07880 1.32905 0.94144 0.91591 1.25927 1.01525 0.97328 0.94963 1.70108 1.40731 1.47430 0.99265 0.85562 0.79156 0.79416 0.77347 1.19406 1.20875 1.18743 1.19807 0.95521 0.96047 0.96204 1.21045 0.96084 0.97421 1.00295 1.21398 1.00896 0.94531 0.96803 1.21467 0.94299 1.00682 0.98126 1.21377 0.97488 0.94879 1.00290 1.21097 0.99012 0.97032 0.97062 1.84042 1.16428 1.36052 1.71228 0.90152 0.87449 0.87280 0.80174 0.80889 0.82752 0.83375 0.75414 0.99858 0.98585 0.92937 0.85861 0.83279 0.83078 0.83941 0.87081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.41 71.24 0.74 0.13 16 2 C 0.01 0.11 7.30 24.98 0.18 0.29 16 3 C -0.23 -3.61 10.76 22.06 0.24 -3.37 16 4 C -0.15 -2.98 10.90 22.71 0.25 -2.73 16 5 C -0.04 -1.10 6.84 23.03 0.16 -0.94 16 6 C 0.02 0.64 9.39 22.49 0.21 0.85 16 7 C -0.22 -6.69 9.41 22.48 0.21 -6.48 16 8 C 0.54 21.57 7.53 85.06 0.64 22.21 16 9 O -0.59 -29.19 15.80 -4.57 -0.07 -29.26 16 10 N -0.71 -27.16 5.00 -455.13 -2.28 -29.44 16 11 C 0.20 8.96 2.19 44.24 0.10 9.05 16 12 H 0.06 3.07 7.46 -2.39 -0.02 3.05 16 13 C 0.04 2.22 4.73 29.85 0.14 2.37 16 14 C -0.53 -31.05 8.64 25.60 0.22 -30.83 16 15 H 0.07 3.71 6.43 -2.91 -0.02 3.69 16 16 C 0.00 0.00 5.46 84.65 0.46 0.46 16 17 N -0.93 -59.62 13.29 21.45 0.28 -59.33 16 18 Si 0.96 46.28 29.54 68.60 2.03 48.31 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 21 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 22 C -0.08 -2.93 4.49 -19.86 -0.09 -3.02 16 23 C -0.13 -4.28 9.06 22.27 0.20 -4.08 16 24 C -0.12 -3.17 10.05 22.27 0.22 -2.95 16 25 C -0.13 -3.26 10.05 22.27 0.22 -3.03 16 26 C -0.12 -3.57 10.05 22.27 0.22 -3.35 16 27 C -0.12 -4.51 8.63 22.27 0.19 -4.32 16 28 O -0.18 -4.21 10.18 -6.10 -0.06 -4.27 16 29 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 34 H 0.16 4.47 7.46 -2.91 -0.02 4.45 16 35 H 0.15 3.74 7.72 -2.91 -0.02 3.72 16 36 H 0.41 12.60 6.85 -92.71 -0.63 11.96 16 37 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 38 H 0.00 -0.24 8.13 -2.39 -0.02 -0.26 16 39 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 40 H 0.12 3.70 6.91 -2.91 -0.02 3.68 16 41 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 42 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 43 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 44 H 0.11 4.15 7.83 -2.91 -0.02 4.12 16 Total: -1.00 -81.37 380.96 4.80 -76.56 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.38 Total: 27.19 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 4.53 Total: -29.75 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -1.99 Total: -88.77 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.13 Total: -33.53 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -81.37 4.80 -76.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153448773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.026 kcal (2) G-P(sol) polarization free energy of solvation -81.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds