Wall clock time and date at job start Tue Mar 31 2020 14:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35155 * 125.48095 * 2 1 4 4 C 1.40314 * 107.20712 * 179.77862 * 3 2 1 5 5 C 1.37950 * 106.52438 * 0.34948 * 4 3 2 6 6 C 1.41605 * 126.10242 * 179.91201 * 5 4 3 7 7 C 1.35625 * 120.00099 * 179.71546 * 6 5 4 8 8 C 1.41555 * 119.99830 * 179.97438 * 7 6 5 9 9 O 1.21772 * 120.00411 * 359.72424 * 8 7 6 10 10 N 1.34784 * 119.99888 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99893 * 179.72610 * 10 8 7 12 12 H 1.09002 * 109.47048 * 324.99733 * 11 10 8 13 13 C 1.53004 * 109.46824 * 204.99873 * 11 10 8 14 14 C 1.50706 * 109.46826 * 65.00077 * 13 11 10 15 15 H 1.07995 * 120.00354 * 359.97438 * 14 13 11 16 16 C 1.37884 * 119.99591 * 179.97438 * 14 13 11 17 17 N 1.31509 * 119.99574 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00159 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47641 * 89.99834 * 18 16 14 20 20 H 1.48502 * 109.47165 * 210.00134 * 18 16 14 21 21 H 1.48497 * 109.47014 * 329.99614 * 18 16 14 22 22 C 1.50697 * 109.47312 * 85.00292 * 11 10 8 23 23 C 1.38237 * 120.00056 * 39.72235 * 22 11 10 24 24 C 1.38237 * 119.99543 * 179.81433 * 23 22 11 25 25 C 1.38234 * 120.00431 * 0.39280 * 24 23 22 26 26 C 1.38236 * 119.99792 * 359.86186 * 25 24 23 27 27 C 1.38234 * 119.99918 * 219.99781 * 22 11 10 28 28 O 1.34017 * 125.48281 * 179.97438 * 2 1 3 29 29 H 1.09008 * 109.47238 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47798 * 299.97629 * 1 2 3 31 31 H 1.09001 * 109.47757 * 59.98342 * 1 2 3 32 32 H 1.08001 * 126.39674 * 0.02562 * 3 2 1 33 33 H 1.08001 * 126.73740 * 180.22743 * 4 3 2 34 34 H 1.07998 * 120.00195 * 359.71238 * 6 5 4 35 35 H 1.07995 * 120.00432 * 359.97438 * 7 6 5 36 36 H 0.97005 * 119.99846 * 359.72399 * 10 8 7 37 37 H 1.08998 * 109.47231 * 184.99873 * 13 11 10 38 38 H 1.08998 * 109.47079 * 305.00407 * 13 11 10 39 39 H 0.97003 * 120.00071 * 179.97438 * 17 16 14 40 40 H 1.08000 * 120.00093 * 359.97438 * 23 22 11 41 41 H 1.08004 * 119.99715 * 180.22928 * 24 23 22 42 42 H 1.07999 * 120.00027 * 179.83484 * 25 24 23 43 43 H 1.07996 * 119.99867 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.99883 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2915 1.1006 0.0000 4 6 3.6238 0.6606 0.0052 5 6 3.5817 -0.7182 0.0001 6 6 4.6999 -1.5871 0.0009 7 6 4.5146 -2.9307 0.0012 8 6 5.6324 -3.7992 0.0015 9 8 6.7603 -3.3402 -0.0037 10 7 5.4483 -5.1344 0.0024 11 6 6.6051 -6.0333 -0.0034 12 1 7.4056 -5.5915 -0.5969 13 6 6.2025 -7.3786 -0.6111 14 6 5.8397 -7.1863 -2.0611 15 1 5.8907 -6.2029 -2.5048 16 6 5.4427 -8.2658 -2.8214 17 7 5.1256 -8.0979 -4.0866 18 14 5.3538 -9.9665 -2.0539 19 1 3.9986 -10.1836 -1.4869 20 1 5.6262 -10.9929 -3.0920 21 1 6.3660 -10.0752 -0.9728 22 6 7.0848 -6.2439 1.4096 23 6 6.1699 -6.3885 2.4358 24 6 6.6100 -6.5855 3.7313 25 6 7.9648 -6.6298 4.0019 26 6 8.8797 -6.4798 2.9765 27 6 8.4396 -6.2867 1.6804 28 8 2.2849 -1.0913 0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3635 0.5134 0.8902 31 1 -0.3634 0.5141 -0.8898 32 1 1.9555 2.1270 0.0004 33 1 4.5086 1.2799 0.0100 34 1 5.7002 -1.1800 0.0012 35 1 3.5144 -3.3379 0.0013 36 1 4.5499 -5.5002 0.0069 37 1 7.0367 -8.0760 -0.5347 38 1 5.3439 -7.7785 -0.0717 39 1 4.8466 -8.8575 -4.6216 40 1 5.1114 -6.3502 2.2249 41 1 5.8952 -6.7022 4.5325 42 1 8.3086 -6.7810 5.0145 43 1 9.9382 -6.5140 3.1880 44 1 9.1544 -6.1697 0.8793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153448852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:37 Heat of formation + Delta-G solvation = 11.899330 kcal Electronic energy + Delta-G solvation = -26074.475489 eV Core-core repulsion = 22344.468579 eV Total energy + Delta-G solvation = -3730.006910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.69316 -39.79201 -38.57023 -35.44454 -34.16477 -33.40827 -32.66679 -31.62422 -30.93102 -30.52727 -29.31573 -27.14522 -25.06732 -23.06525 -22.28223 -21.99845 -21.76417 -20.60748 -19.82676 -19.27208 -17.22515 -17.15022 -16.52800 -16.39547 -16.18408 -15.53746 -14.98530 -14.67375 -14.32235 -14.28863 -14.17790 -13.55294 -13.38025 -13.33489 -13.11463 -13.08881 -12.92399 -12.64839 -12.57967 -12.38544 -12.20212 -12.01713 -11.85600 -11.27779 -11.08479 -10.75257 -10.61363 -10.49559 -10.23303 -9.91434 -9.87106 -9.53172 -9.31765 -8.63667 -8.60229 -8.49771 -8.29694 -7.87976 -6.10818 -4.10632 0.48408 1.68849 1.71821 1.99873 2.67152 2.71301 3.24962 3.34171 3.37387 3.76540 3.83732 4.17391 4.38256 4.51073 4.73087 4.83203 5.01366 5.14748 5.18135 5.19583 5.20176 5.22933 5.27991 5.37593 5.44664 5.51946 5.54852 5.66402 5.82492 5.84567 5.97882 6.00852 6.09452 6.23163 6.28984 6.33753 6.39161 6.43727 6.74669 6.77156 6.81940 6.93545 6.98391 7.06044 7.31314 7.35665 7.65274 8.09704 8.44302 8.73921 8.95306 9.49888 11.01988 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.003493 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.278028 B = 8014.329354 C =10111.863643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.001 4.001 3 C -0.217 4.217 4 C -0.170 4.170 5 C 0.001 3.999 6 C -0.010 4.010 7 C -0.185 4.185 8 C 0.545 3.455 9 O -0.554 6.554 10 N -0.694 5.694 11 C 0.194 3.806 12 H 0.093 0.907 13 C -0.014 4.014 14 C -0.521 4.521 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.875 3.125 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.075 4.075 23 C -0.109 4.109 24 C -0.125 4.125 25 C -0.134 4.134 26 C -0.123 4.123 27 C -0.107 4.107 28 O -0.163 6.163 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.160 0.840 35 H 0.128 0.872 36 H 0.402 0.598 37 H 0.034 0.966 38 H 0.019 0.981 39 H 0.264 0.736 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.501 13.264 13.424 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.052 4.052 3 C -0.236 4.236 4 C -0.189 4.189 5 C -0.048 4.048 6 C -0.029 4.029 7 C -0.206 4.206 8 C 0.334 3.666 9 O -0.436 6.436 10 N -0.342 5.342 11 C 0.089 3.911 12 H 0.111 0.889 13 C -0.051 4.051 14 C -0.559 4.559 15 H 0.094 0.906 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.077 4.077 23 C -0.128 4.128 24 C -0.143 4.143 25 C -0.152 4.152 26 C -0.141 4.141 27 C -0.126 4.126 28 O -0.059 6.059 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.168 0.832 33 H 0.173 0.827 34 H 0.177 0.823 35 H 0.146 0.854 36 H 0.237 0.763 37 H 0.052 0.948 38 H 0.037 0.963 39 H 0.074 0.926 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.870 13.139 13.235 19.275 hybrid contribution -0.532 -1.039 0.210 1.186 sum -5.401 12.100 13.444 18.877 Atomic orbital electron populations 1.20371 0.84990 1.04375 1.03641 1.22692 0.94211 0.84116 1.04202 1.21466 0.92752 0.99428 1.09941 1.22292 0.98377 0.93187 1.05025 1.19886 0.81953 0.93539 1.09435 1.20610 0.95338 0.92216 0.94780 1.22225 0.99787 0.94372 1.04206 1.16927 0.89260 0.82990 0.77385 1.90791 1.25190 1.76600 1.50999 1.45857 1.10359 1.05268 1.72694 1.19972 0.88621 0.92284 0.90231 0.88860 1.19877 0.97081 0.91067 0.97094 1.21028 1.45458 0.96754 0.92665 0.90579 1.24986 0.94623 0.98824 0.94656 1.69906 1.45506 1.31289 1.06890 0.86854 0.78945 0.84590 0.79393 1.20271 1.21309 1.18911 1.20571 0.93538 0.97038 0.96524 1.20935 0.99468 0.99920 0.92449 1.21052 0.95657 1.01080 0.96531 1.21017 0.93436 1.02025 0.98711 1.21063 0.99216 1.00753 0.93033 1.21045 0.95308 0.99521 0.96677 1.84068 1.16406 1.34716 1.70703 0.90314 0.89532 0.89444 0.83171 0.82722 0.82280 0.85362 0.76306 0.94789 0.96313 0.92637 0.86494 0.86674 0.86763 0.86492 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.41 36.00 0.37 -0.12 16 2 C 0.00 -0.01 7.30 -35.41 -0.26 -0.26 16 3 C -0.22 -2.15 10.76 -39.90 -0.43 -2.58 16 4 C -0.17 -1.88 10.90 -38.91 -0.42 -2.30 16 5 C 0.00 0.01 6.84 -38.40 -0.26 -0.25 16 6 C -0.01 -0.13 9.39 -39.23 -0.37 -0.50 16 7 C -0.19 -2.83 9.41 -39.25 -0.37 -3.20 16 8 C 0.54 10.03 7.52 -14.99 -0.11 9.91 16 9 O -0.55 -11.78 15.77 5.12 0.08 -11.70 16 10 N -0.69 -12.73 4.01 -57.85 -0.23 -12.96 16 11 C 0.19 3.88 2.12 -69.08 -0.15 3.73 16 12 H 0.09 2.07 7.44 -51.93 -0.39 1.69 16 13 C -0.01 -0.31 3.56 -27.88 -0.10 -0.41 16 14 C -0.52 -14.09 9.39 -34.43 -0.32 -14.41 16 15 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 18 Si 0.87 20.97 27.47 -169.99 -4.67 16.30 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.26 -6.13 6.54 56.52 0.37 -5.77 16 22 C -0.08 -1.36 4.91 -104.63 -0.51 -1.87 16 23 C -0.11 -1.77 9.33 -39.58 -0.37 -2.14 16 24 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 25 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 26 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 27 C -0.11 -1.80 9.67 -39.58 -0.38 -2.18 16 28 O -0.16 -2.14 10.18 4.68 0.05 -2.09 16 29 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.16 2.14 7.46 -52.49 -0.39 1.75 16 35 H 0.13 1.76 7.72 -52.49 -0.41 1.35 16 36 H 0.40 6.73 8.56 -40.82 -0.35 6.38 16 37 H 0.03 0.79 7.20 -51.93 -0.37 0.41 16 38 H 0.02 0.41 7.57 -51.93 -0.39 0.01 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.12 1.75 7.71 -52.49 -0.40 1.35 16 41 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 42 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.12 1.96 8.04 -52.49 -0.42 1.54 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -33.37 381.96 -9.31 -42.68 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.09 Total: 9.44 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -4.98 Total: -21.25 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.54 Total: -39.13 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.13 Total: -13.78 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.37 -9.31 -42.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153448852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.578 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds