Wall clock time and date at job start Tue Mar 31 2020 14:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35155 * 125.48095 * 2 1 4 4 C 1.40314 * 107.20712 * 179.77862 * 3 2 1 5 5 C 1.37950 * 106.52438 * 0.34948 * 4 3 2 6 6 C 1.41605 * 126.10242 * 179.91201 * 5 4 3 7 7 C 1.35625 * 120.00099 * 179.71546 * 6 5 4 8 8 C 1.41555 * 119.99830 * 179.97438 * 7 6 5 9 9 O 1.21772 * 120.00411 * 359.72424 * 8 7 6 10 10 N 1.34784 * 119.99888 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99893 * 179.72610 * 10 8 7 12 12 H 1.09002 * 109.47048 * 324.99733 * 11 10 8 13 13 C 1.53004 * 109.46824 * 204.99873 * 11 10 8 14 14 C 1.50706 * 109.46826 * 65.00077 * 13 11 10 15 15 H 1.07995 * 120.00354 * 359.97438 * 14 13 11 16 16 C 1.37884 * 119.99591 * 179.97438 * 14 13 11 17 17 N 1.31509 * 119.99574 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00159 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47641 * 89.99834 * 18 16 14 20 20 H 1.48502 * 109.47165 * 210.00134 * 18 16 14 21 21 H 1.48497 * 109.47014 * 329.99614 * 18 16 14 22 22 C 1.50697 * 109.47312 * 85.00292 * 11 10 8 23 23 C 1.38237 * 120.00056 * 39.72235 * 22 11 10 24 24 C 1.38237 * 119.99543 * 179.81433 * 23 22 11 25 25 C 1.38234 * 120.00431 * 0.39280 * 24 23 22 26 26 C 1.38236 * 119.99792 * 359.86186 * 25 24 23 27 27 C 1.38234 * 119.99918 * 219.99781 * 22 11 10 28 28 O 1.34017 * 125.48281 * 179.97438 * 2 1 3 29 29 H 1.09008 * 109.47238 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47798 * 299.97629 * 1 2 3 31 31 H 1.09001 * 109.47757 * 59.98342 * 1 2 3 32 32 H 1.08001 * 126.39674 * 0.02562 * 3 2 1 33 33 H 1.08001 * 126.73740 * 180.22743 * 4 3 2 34 34 H 1.07998 * 120.00195 * 359.71238 * 6 5 4 35 35 H 1.07995 * 120.00432 * 359.97438 * 7 6 5 36 36 H 0.97005 * 119.99846 * 359.72399 * 10 8 7 37 37 H 1.08998 * 109.47231 * 184.99873 * 13 11 10 38 38 H 1.08998 * 109.47079 * 305.00407 * 13 11 10 39 39 H 0.97003 * 120.00071 * 179.97438 * 17 16 14 40 40 H 1.08000 * 120.00093 * 359.97438 * 23 22 11 41 41 H 1.08004 * 119.99715 * 180.22928 * 24 23 22 42 42 H 1.07999 * 120.00027 * 179.83484 * 25 24 23 43 43 H 1.07996 * 119.99867 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.99883 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2915 1.1006 0.0000 4 6 3.6238 0.6606 0.0052 5 6 3.5817 -0.7182 0.0001 6 6 4.6999 -1.5871 0.0009 7 6 4.5146 -2.9307 0.0012 8 6 5.6324 -3.7992 0.0015 9 8 6.7603 -3.3402 -0.0037 10 7 5.4483 -5.1344 0.0024 11 6 6.6051 -6.0333 -0.0034 12 1 7.4056 -5.5915 -0.5969 13 6 6.2025 -7.3786 -0.6111 14 6 5.8397 -7.1863 -2.0611 15 1 5.8907 -6.2029 -2.5048 16 6 5.4427 -8.2658 -2.8214 17 7 5.1256 -8.0979 -4.0866 18 14 5.3538 -9.9665 -2.0539 19 1 3.9986 -10.1836 -1.4869 20 1 5.6262 -10.9929 -3.0920 21 1 6.3660 -10.0752 -0.9728 22 6 7.0848 -6.2439 1.4096 23 6 6.1699 -6.3885 2.4358 24 6 6.6100 -6.5855 3.7313 25 6 7.9648 -6.6298 4.0019 26 6 8.8797 -6.4798 2.9765 27 6 8.4396 -6.2867 1.6804 28 8 2.2849 -1.0913 0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3635 0.5134 0.8902 31 1 -0.3634 0.5141 -0.8898 32 1 1.9555 2.1270 0.0004 33 1 4.5086 1.2799 0.0100 34 1 5.7002 -1.1800 0.0012 35 1 3.5144 -3.3379 0.0013 36 1 4.5499 -5.5002 0.0069 37 1 7.0367 -8.0760 -0.5347 38 1 5.3439 -7.7785 -0.0717 39 1 4.8466 -8.8575 -4.6216 40 1 5.1114 -6.3502 2.2249 41 1 5.8952 -6.7022 4.5325 42 1 8.3086 -6.7810 5.0145 43 1 9.9382 -6.5140 3.1880 44 1 9.1544 -6.1697 0.8793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153448852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:36 Heat of formation + Delta-G solvation = -7.143063 kcal Electronic energy + Delta-G solvation = -26075.301229 eV Core-core repulsion = 22344.468579 eV Total energy + Delta-G solvation = -3730.832650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.58406 -41.20991 -39.83492 -36.96180 -35.30725 -34.70778 -34.25918 -32.90367 -31.92643 -31.68466 -30.98870 -28.20281 -26.61388 -24.20725 -23.60597 -23.23822 -22.87990 -21.73453 -21.24798 -20.48502 -19.07166 -18.47745 -17.87982 -17.33037 -17.29423 -16.87410 -16.38666 -16.19307 -15.60841 -15.57836 -15.51018 -14.99097 -14.60418 -14.27059 -14.15803 -14.10863 -13.95233 -13.90340 -13.81405 -13.65569 -13.48937 -13.25560 -13.03996 -12.73342 -12.48820 -12.36592 -11.97729 -11.80874 -11.75051 -11.65492 -11.45642 -11.03578 -10.77868 -10.77497 -10.03350 -9.76877 -9.55647 -8.85027 -8.29215 -6.34316 -0.60169 0.48713 0.54713 1.08991 1.35216 1.38376 1.49496 1.68556 1.87660 2.34675 2.38446 2.49337 2.95914 3.06669 3.68807 3.85161 3.92452 3.94902 4.01695 4.08381 4.19751 4.24231 4.31777 4.40599 4.48728 4.56799 4.67089 4.71848 4.72842 4.75006 4.79936 4.87937 5.01421 5.11345 5.12314 5.13971 5.17008 5.23943 5.26493 5.53297 5.55679 5.56098 5.63400 5.64385 5.86514 6.09749 6.16885 6.24771 6.64889 6.73367 7.28828 7.30877 8.87323 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.003493 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.278028 B = 8014.329354 C =10111.863643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.003 3.997 3 C -0.226 4.226 4 C -0.149 4.149 5 C -0.046 4.046 6 C 0.023 3.977 7 C -0.221 4.221 8 C 0.545 3.455 9 O -0.594 6.594 10 N -0.694 5.694 11 C 0.204 3.796 12 H 0.057 0.943 13 C -0.003 4.003 14 C -0.522 4.522 15 H 0.030 0.970 16 C 0.012 3.988 17 N -0.948 5.948 18 Si 0.947 3.053 19 H -0.261 1.261 20 H -0.287 1.287 21 H -0.249 1.249 22 C -0.100 4.100 23 C -0.121 4.121 24 C -0.124 4.124 25 C -0.127 4.127 26 C -0.123 4.123 27 C -0.131 4.131 28 O -0.184 6.184 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.182 0.818 33 H 0.177 0.823 34 H 0.160 0.840 35 H 0.139 0.861 36 H 0.408 0.592 37 H 0.032 0.968 38 H 0.035 0.965 39 H 0.266 0.734 40 H 0.123 0.877 41 H 0.147 0.853 42 H 0.152 0.848 43 H 0.144 0.856 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.826 13.757 16.609 22.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.049 4.049 3 C -0.244 4.244 4 C -0.169 4.169 5 C -0.094 4.094 6 C 0.003 3.997 7 C -0.242 4.242 8 C 0.337 3.663 9 O -0.479 6.479 10 N -0.342 5.342 11 C 0.098 3.902 12 H 0.075 0.925 13 C -0.041 4.041 14 C -0.560 4.560 15 H 0.048 0.952 16 C -0.186 4.186 17 N -0.588 5.588 18 Si 0.770 3.230 19 H -0.186 1.186 20 H -0.213 1.213 21 H -0.173 1.173 22 C -0.101 4.101 23 C -0.139 4.139 24 C -0.142 4.142 25 C -0.145 4.145 26 C -0.141 4.141 27 C -0.149 4.149 28 O -0.081 6.081 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.199 0.801 33 H 0.194 0.806 34 H 0.177 0.823 35 H 0.156 0.844 36 H 0.244 0.756 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.141 0.859 41 H 0.165 0.835 42 H 0.169 0.831 43 H 0.162 0.838 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.206 13.634 16.438 22.239 hybrid contribution -0.200 -0.898 -0.788 1.211 sum -6.406 12.736 15.650 21.170 Atomic orbital electron populations 1.20619 0.82200 1.05012 1.05675 1.23650 0.95904 0.83723 1.01576 1.21896 0.91935 1.00842 1.09752 1.22756 1.00010 0.92486 1.01606 1.19857 0.81930 0.94232 1.13418 1.20693 0.96018 0.91893 0.91142 1.21982 0.98937 0.94455 1.08797 1.17340 0.89605 0.83051 0.76275 1.90748 1.26780 1.77069 1.53274 1.45799 1.10195 1.05375 1.72792 1.19578 0.88096 0.90816 0.91668 0.92511 1.19722 0.97298 0.92689 0.94389 1.21209 1.44904 0.94858 0.95029 0.95172 1.25912 0.94204 1.03481 0.94980 1.70067 1.47230 1.32758 1.08743 0.85713 0.79954 0.78614 0.78714 1.18624 1.21277 1.17313 1.20379 0.94582 0.99731 0.95392 1.21096 0.99498 1.00272 0.93077 1.21442 0.96834 0.99628 0.96247 1.21487 0.92994 0.99882 1.00126 1.21394 1.01046 0.99621 0.92006 1.21187 0.94873 1.00824 0.98062 1.84062 1.16639 1.36176 1.71219 0.90446 0.87140 0.87496 0.80062 0.80592 0.82310 0.84352 0.75582 0.95027 0.94725 0.92490 0.85945 0.83535 0.83081 0.83794 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.41 71.24 0.74 -0.06 16 2 C 0.00 0.06 7.30 24.97 0.18 0.24 16 3 C -0.23 -3.85 10.76 22.06 0.24 -3.61 16 4 C -0.15 -3.05 10.90 22.71 0.25 -2.80 16 5 C -0.05 -1.20 6.84 23.03 0.16 -1.04 16 6 C 0.02 0.65 9.39 22.50 0.21 0.87 16 7 C -0.22 -7.21 9.41 22.48 0.21 -6.99 16 8 C 0.55 21.63 7.52 85.06 0.64 22.27 16 9 O -0.59 -27.21 15.77 -4.58 -0.07 -27.28 16 10 N -0.69 -27.27 4.01 -455.11 -1.82 -29.10 16 11 C 0.20 8.69 2.12 44.25 0.09 8.78 16 12 H 0.06 2.78 7.44 -2.39 -0.02 2.77 16 13 C 0.00 -0.15 3.56 29.85 0.11 -0.05 16 14 C -0.52 -29.71 9.39 25.60 0.24 -29.47 16 15 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 16 C 0.01 0.66 5.47 84.66 0.46 1.13 16 17 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 18 Si 0.95 43.58 27.47 68.60 1.88 45.46 16 19 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 21 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 22 C -0.10 -3.67 4.91 -19.87 -0.10 -3.77 16 23 C -0.12 -3.82 9.33 22.27 0.21 -3.62 16 24 C -0.12 -3.16 10.05 22.27 0.22 -2.94 16 25 C -0.13 -3.03 10.05 22.27 0.22 -2.80 16 26 C -0.12 -3.32 10.05 22.27 0.22 -3.10 16 27 C -0.13 -4.47 9.67 22.27 0.22 -4.26 16 28 O -0.18 -4.75 10.18 -6.16 -0.06 -4.82 16 29 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 33 H 0.18 2.70 8.06 -2.91 -0.02 2.67 16 34 H 0.16 4.50 7.46 -2.91 -0.02 4.48 16 35 H 0.14 4.08 7.72 -2.91 -0.02 4.05 16 36 H 0.41 14.56 8.56 -92.70 -0.79 13.77 16 37 H 0.03 1.48 7.20 -2.39 -0.02 1.47 16 38 H 0.03 1.50 7.57 -2.39 -0.02 1.49 16 39 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.12 3.60 7.71 -2.91 -0.02 3.58 16 41 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 42 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 43 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 44 H 0.11 3.90 8.04 -2.91 -0.02 3.88 16 Total: -1.00 -76.93 381.96 4.91 -72.02 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.16 Total: 33.80 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 4.53 Total: -31.23 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -1.53 Total: -87.96 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.13 Total: -32.10 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Total: -76.93 4.91 -72.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153448852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.874 kcal (2) G-P(sol) polarization free energy of solvation -76.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds