Wall clock time and date at job start Tue Mar 31 2020 14:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46784 * 2 1 4 4 C 1.37972 * 120.07294 * 98.02588 * 3 2 1 5 5 C 1.38338 * 120.14347 * 179.97438 * 4 3 2 6 6 C 1.38378 * 120.29299 * 0.02578 * 5 4 3 7 7 C 1.37929 * 120.14988 * 359.97438 * 6 5 4 8 8 C 1.39559 * 120.07100 * 278.06201 * 3 2 1 9 9 C 1.47845 * 120.14779 * 0.02562 * 8 3 2 10 10 O 1.21546 * 119.99752 * 5.59591 * 9 8 3 11 11 N 1.34773 * 120.00146 * 185.59789 * 9 8 3 12 12 C 1.46500 * 120.00320 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47208 * 180.02562 * 12 11 9 14 14 C 1.38326 * 119.96370 * 269.72463 * 13 12 11 15 15 C 1.38277 * 120.13794 * 179.76896 * 14 13 12 16 16 C 1.38129 * 120.06759 * 0.51214 * 15 14 13 17 17 C 1.38856 * 119.92795 * 359.74228 * 16 15 14 18 18 O 1.35747 * 120.06982 * 179.97438 * 17 16 15 19 19 C 1.34829 * 117.00013 * 5.67056 * 18 17 16 20 20 H 1.08007 * 120.00039 * 354.91197 * 19 18 17 21 21 C 1.38660 * 120.00257 * 174.89957 * 19 18 17 22 22 N 1.31553 * 119.99687 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99971 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47136 * 90.00378 * 23 21 19 25 25 H 1.48505 * 109.46945 * 210.00580 * 23 21 19 26 26 H 1.48503 * 109.46973 * 330.00337 * 23 21 19 27 27 C 1.38075 * 119.96434 * 90.00680 * 13 12 11 28 28 H 1.08996 * 109.46842 * 300.00296 * 1 2 3 29 29 H 1.09006 * 109.46980 * 59.99996 * 1 2 3 30 30 H 1.08994 * 109.47073 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46963 * 240.00234 * 2 1 3 32 32 H 1.08994 * 109.46852 * 119.99568 * 2 1 3 33 33 H 1.07998 * 119.92795 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.85384 * 180.02562 * 5 4 3 35 35 H 1.08006 * 119.92807 * 180.02562 * 6 5 4 36 36 H 1.07995 * 120.08239 * 179.72252 * 7 6 5 37 37 H 0.97004 * 119.99912 * 359.97438 * 11 9 8 38 38 H 1.08993 * 109.47160 * 300.00880 * 12 11 9 39 39 H 1.09007 * 109.46573 * 60.00312 * 12 11 9 40 40 H 1.08004 * 119.93342 * 0.02562 * 14 13 12 41 41 H 1.08001 * 119.97016 * 180.26167 * 15 14 13 42 42 H 1.07994 * 120.03458 * 179.76784 * 16 15 14 43 43 H 0.97003 * 119.99800 * 179.97438 * 22 21 19 44 44 H 1.07993 * 120.03613 * 359.95187 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4199 2.0172 1.1823 5 6 2.8817 3.3212 1.1839 6 6 2.9576 4.0362 0.0016 7 6 2.5733 3.4520 -1.1872 8 6 2.1057 2.1366 -1.1958 9 6 1.6907 1.5044 -2.4662 10 8 1.1899 0.3970 -2.4588 11 7 1.8678 2.1561 -3.6326 12 6 1.4572 1.5295 -4.8915 13 6 1.7625 2.4585 -6.0381 14 6 0.8133 3.3729 -6.4580 15 6 1.0913 4.2304 -7.5066 16 6 2.3147 4.1689 -8.1450 17 6 3.2676 3.2485 -7.7293 18 8 4.4706 3.1853 -8.3550 19 6 4.7223 4.1200 -9.2936 20 1 3.9523 4.8227 -9.5760 21 6 5.9697 4.1793 -9.8961 22 7 6.9075 3.3232 -9.5523 23 14 6.3185 5.4748 -11.1960 24 1 6.8501 6.6988 -10.5447 25 1 7.3202 4.9519 -12.1596 26 1 5.0625 5.8033 -11.9169 27 6 2.9872 2.3921 -6.6722 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.3635 1.4644 2.1084 34 1 3.1843 3.7832 2.1120 35 1 3.3195 5.0539 0.0096 36 1 2.6288 4.0125 -2.1087 37 1 2.2672 3.0401 -3.6385 38 1 2.0015 0.5949 -5.0267 39 1 0.3867 1.3257 -4.8636 40 1 -0.1455 3.4201 -5.9631 41 1 0.3498 4.9461 -7.8294 42 1 2.5299 4.8363 -8.9663 43 1 7.7801 3.3644 -9.9741 44 1 3.7265 1.6755 -6.3464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153756817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:41 Heat of formation + Delta-G solvation = -18.673831 kcal Electronic energy + Delta-G solvation = -25953.440493 eV Core-core repulsion = 22222.107832 eV Total energy + Delta-G solvation = -3731.332662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.54187 -39.22069 -38.35519 -36.82606 -34.99315 -33.71444 -32.37193 -31.81919 -30.43057 -29.57178 -29.10909 -26.17893 -25.24320 -24.02416 -23.50459 -21.76406 -21.32516 -20.74183 -20.46358 -18.24388 -17.52512 -16.97640 -16.23738 -15.88229 -15.46130 -15.22943 -15.06262 -15.00020 -14.54282 -14.41758 -13.94349 -13.83545 -13.70072 -13.52511 -13.18676 -13.09873 -12.70999 -12.43612 -12.35768 -12.17951 -11.86887 -11.75370 -11.70164 -11.42163 -11.09958 -10.94383 -10.88566 -10.84348 -10.72304 -10.49217 -9.65502 -9.43452 -9.23522 -9.03150 -8.91558 -8.82241 -8.27307 -7.35815 -6.51515 -4.11115 0.70054 1.14276 1.87055 2.24018 2.82535 3.08006 3.09184 3.14171 3.34008 3.69160 3.90587 4.45606 4.54685 4.60815 4.62767 4.80941 4.91328 5.04517 5.06721 5.21246 5.26157 5.29772 5.42901 5.45943 5.50809 5.63872 5.71636 5.79836 5.82137 5.87688 5.91165 6.03890 6.07226 6.10252 6.21347 6.22572 6.25438 6.45693 6.52250 6.53653 6.68057 6.78776 6.96742 7.15645 7.24419 7.32875 7.54898 7.68607 7.92533 8.23098 8.93790 9.62271 10.66200 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.002441 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.285855 B =11468.331946 C =12093.008682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C -0.020 4.020 4 C -0.132 4.132 5 C -0.093 4.093 6 C -0.134 4.134 7 C -0.082 4.082 8 C -0.135 4.135 9 C 0.553 3.447 10 O -0.532 6.532 11 N -0.716 5.716 12 C 0.169 3.831 13 C -0.074 4.074 14 C -0.195 4.195 15 C -0.076 4.076 16 C -0.226 4.226 17 C 0.150 3.850 18 O -0.176 6.176 19 C -0.394 4.394 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.171 4.171 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.402 0.598 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.128 0.872 43 H 0.271 0.729 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.682 0.603 18.123 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.128 4.128 3 C -0.021 4.021 4 C -0.150 4.150 5 C -0.111 4.111 6 C -0.152 4.152 7 C -0.100 4.100 8 C -0.138 4.138 9 C 0.341 3.659 10 O -0.411 6.411 11 N -0.367 5.367 12 C 0.046 3.954 13 C -0.075 4.075 14 C -0.215 4.215 15 C -0.094 4.094 16 C -0.245 4.245 17 C 0.097 3.903 18 O -0.079 6.079 19 C -0.470 4.470 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.191 4.191 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.237 0.763 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.146 0.854 43 H 0.081 0.919 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.600 -0.418 18.037 20.437 hybrid contribution 0.457 1.345 -0.773 1.617 sum -9.143 0.927 17.264 19.557 Atomic orbital electron populations 1.21593 0.94320 1.01603 1.01493 1.20776 0.96892 0.91767 1.03414 1.20068 0.94209 0.96370 0.91492 1.21052 1.00924 0.95465 0.97544 1.21339 0.97208 0.94325 0.98272 1.21096 1.01308 1.00460 0.92359 1.21379 0.96060 0.93829 0.98757 1.19842 1.05246 0.95159 0.93558 1.18264 0.78780 0.85310 0.83513 1.90713 1.44036 1.19327 1.87008 1.46090 1.63326 1.21437 1.05894 1.20166 1.00253 0.94837 0.80094 1.19268 0.94096 0.97431 0.96689 1.20481 0.99308 1.00234 1.01462 1.20748 0.95859 0.97604 0.95199 1.21246 0.94873 1.03838 1.04576 1.19323 0.86896 0.93074 0.91047 1.83983 1.28106 1.48742 1.47073 1.21327 0.98925 1.11030 1.15697 0.89031 1.25301 0.94407 0.98162 0.98583 1.70036 1.04069 1.34448 1.40950 0.85709 0.78823 0.79491 0.79402 1.19834 1.20199 1.19170 1.20092 0.97471 1.03297 0.98197 0.93871 0.91730 0.92694 0.88146 0.92137 0.85547 0.85698 0.85419 0.85427 0.76252 0.90718 0.90800 0.87498 0.87272 0.85449 0.91922 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 9.43 37.16 0.35 -1.08 16 2 C -0.09 -1.02 5.32 -27.88 -0.15 -1.16 16 3 C -0.02 -0.23 5.17 -104.23 -0.54 -0.77 16 4 C -0.13 -1.22 9.66 -39.64 -0.38 -1.60 16 5 C -0.09 -0.78 10.04 -39.49 -0.40 -1.18 16 6 C -0.13 -1.20 10.03 -39.64 -0.40 -1.59 16 7 C -0.08 -0.84 9.53 -39.18 -0.37 -1.22 16 8 C -0.14 -1.64 5.87 -104.96 -0.62 -2.25 16 9 C 0.55 7.67 7.64 -12.33 -0.09 7.58 16 10 O -0.53 -8.39 11.60 5.33 0.06 -8.33 16 11 N -0.72 -9.51 5.50 -62.43 -0.34 -9.85 16 12 C 0.17 2.44 5.80 -5.19 -0.03 2.41 16 13 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 14 C -0.20 -3.14 9.70 -39.53 -0.38 -3.52 16 15 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 16 C -0.23 -4.66 9.17 -39.39 -0.36 -5.02 16 17 C 0.15 3.47 6.65 -39.11 -0.26 3.21 16 18 O -0.18 -4.87 9.76 0.06 0.00 -4.87 16 19 C -0.39 -10.70 9.49 30.89 0.29 -10.40 16 20 H 0.09 2.29 5.21 -52.48 -0.27 2.02 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -24.78 13.67 55.48 0.76 -24.03 16 23 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 27 C -0.17 -3.41 9.65 -39.39 -0.38 -3.79 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.82 6.59 -51.93 -0.34 0.48 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.10 1.33 5.95 -51.93 -0.31 1.02 16 32 H 0.06 0.55 8.03 -51.93 -0.42 0.14 16 33 H 0.13 0.90 8.05 -52.49 -0.42 0.48 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 1.15 6.45 -52.49 -0.34 0.82 16 37 H 0.40 4.85 6.53 -40.82 -0.27 4.59 16 38 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 39 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 40 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 43 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -30.78 368.80 -9.35 -40.13 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -5.60 Total: 9.27 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -4.76 Total: -22.90 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.42 Total: -33.88 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.06 Total: -13.20 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.78 -9.35 -40.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153756817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.459 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds