Wall clock time and date at job start Tue Mar 31 2020 14:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46784 * 2 1 4 4 C 1.37972 * 120.07294 * 98.02588 * 3 2 1 5 5 C 1.38338 * 120.14347 * 179.97438 * 4 3 2 6 6 C 1.38378 * 120.29299 * 0.02578 * 5 4 3 7 7 C 1.37929 * 120.14988 * 359.97438 * 6 5 4 8 8 C 1.39559 * 120.07100 * 278.06201 * 3 2 1 9 9 C 1.47845 * 120.14779 * 0.02562 * 8 3 2 10 10 O 1.21546 * 119.99752 * 5.59591 * 9 8 3 11 11 N 1.34773 * 120.00146 * 185.59789 * 9 8 3 12 12 C 1.46500 * 120.00320 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47208 * 180.02562 * 12 11 9 14 14 C 1.38326 * 119.96370 * 269.72463 * 13 12 11 15 15 C 1.38277 * 120.13794 * 179.76896 * 14 13 12 16 16 C 1.38129 * 120.06759 * 0.51214 * 15 14 13 17 17 C 1.38856 * 119.92795 * 359.74228 * 16 15 14 18 18 O 1.35747 * 120.06982 * 179.97438 * 17 16 15 19 19 C 1.34829 * 117.00013 * 5.67056 * 18 17 16 20 20 H 1.08007 * 120.00039 * 354.91197 * 19 18 17 21 21 C 1.38660 * 120.00257 * 174.89957 * 19 18 17 22 22 N 1.31553 * 119.99687 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99971 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47136 * 90.00378 * 23 21 19 25 25 H 1.48505 * 109.46945 * 210.00580 * 23 21 19 26 26 H 1.48503 * 109.46973 * 330.00337 * 23 21 19 27 27 C 1.38075 * 119.96434 * 90.00680 * 13 12 11 28 28 H 1.08996 * 109.46842 * 300.00296 * 1 2 3 29 29 H 1.09006 * 109.46980 * 59.99996 * 1 2 3 30 30 H 1.08994 * 109.47073 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46963 * 240.00234 * 2 1 3 32 32 H 1.08994 * 109.46852 * 119.99568 * 2 1 3 33 33 H 1.07998 * 119.92795 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.85384 * 180.02562 * 5 4 3 35 35 H 1.08006 * 119.92807 * 180.02562 * 6 5 4 36 36 H 1.07995 * 120.08239 * 179.72252 * 7 6 5 37 37 H 0.97004 * 119.99912 * 359.97438 * 11 9 8 38 38 H 1.08993 * 109.47160 * 300.00880 * 12 11 9 39 39 H 1.09007 * 109.46573 * 60.00312 * 12 11 9 40 40 H 1.08004 * 119.93342 * 0.02562 * 14 13 12 41 41 H 1.08001 * 119.97016 * 180.26167 * 15 14 13 42 42 H 1.07994 * 120.03458 * 179.76784 * 16 15 14 43 43 H 0.97003 * 119.99800 * 179.97438 * 22 21 19 44 44 H 1.07993 * 120.03613 * 359.95187 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4199 2.0172 1.1823 5 6 2.8817 3.3212 1.1839 6 6 2.9576 4.0362 0.0016 7 6 2.5733 3.4520 -1.1872 8 6 2.1057 2.1366 -1.1958 9 6 1.6907 1.5044 -2.4662 10 8 1.1899 0.3970 -2.4588 11 7 1.8678 2.1561 -3.6326 12 6 1.4572 1.5295 -4.8915 13 6 1.7625 2.4585 -6.0381 14 6 0.8133 3.3729 -6.4580 15 6 1.0913 4.2304 -7.5066 16 6 2.3147 4.1689 -8.1450 17 6 3.2676 3.2485 -7.7293 18 8 4.4706 3.1853 -8.3550 19 6 4.7223 4.1200 -9.2936 20 1 3.9523 4.8227 -9.5760 21 6 5.9697 4.1793 -9.8961 22 7 6.9075 3.3232 -9.5523 23 14 6.3185 5.4748 -11.1960 24 1 6.8501 6.6988 -10.5447 25 1 7.3202 4.9519 -12.1596 26 1 5.0625 5.8033 -11.9169 27 6 2.9872 2.3921 -6.6722 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.3635 1.4644 2.1084 34 1 3.1843 3.7832 2.1120 35 1 3.3195 5.0539 0.0096 36 1 2.6288 4.0125 -2.1087 37 1 2.2672 3.0401 -3.6385 38 1 2.0015 0.5949 -5.0267 39 1 0.3867 1.3257 -4.8636 40 1 -0.1455 3.4201 -5.9631 41 1 0.3498 4.9461 -7.8294 42 1 2.5299 4.8363 -8.9663 43 1 7.7801 3.3644 -9.9741 44 1 3.7265 1.6755 -6.3464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153756817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:40 Heat of formation + Delta-G solvation = -35.831477 kcal Electronic energy + Delta-G solvation = -25954.184505 eV Core-core repulsion = 22222.107832 eV Total energy + Delta-G solvation = -3732.076673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51363 -40.80637 -39.36354 -38.41215 -36.12849 -34.65886 -34.28606 -32.86458 -31.62239 -30.73459 -30.32374 -27.65791 -26.94467 -24.95550 -24.31055 -23.28624 -22.59457 -21.91839 -21.45011 -19.69459 -19.03961 -18.45215 -17.23516 -16.84043 -16.76584 -16.53766 -16.23038 -16.06628 -15.99677 -15.80765 -15.51067 -15.06385 -14.69030 -14.68671 -14.37005 -14.08857 -13.96394 -13.91296 -13.64590 -13.32963 -13.10043 -13.03959 -12.65540 -12.56639 -12.50032 -12.37175 -12.29086 -12.11770 -11.92035 -11.71333 -11.23197 -10.83480 -10.68258 -10.19941 -9.88276 -9.77361 -9.65726 -9.05002 -8.47785 -6.16476 -0.10669 0.36349 0.41149 0.68909 1.35462 1.44306 1.52743 1.88011 2.16044 2.22257 2.84094 2.87901 3.16362 3.36712 3.69536 3.79500 3.81932 3.91145 4.07783 4.14309 4.29168 4.35017 4.39714 4.48954 4.51080 4.55068 4.59627 4.64377 4.66935 4.71638 4.92110 5.00021 5.01244 5.10760 5.12607 5.18779 5.23855 5.31260 5.38161 5.50340 5.51746 5.60613 5.65382 5.68998 5.70159 5.97505 6.00690 6.14797 6.49515 6.96982 7.16950 7.77071 8.75357 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.002441 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.285855 B =11468.331946 C =12093.008682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.090 4.090 3 C -0.037 4.037 4 C -0.134 4.134 5 C -0.087 4.087 6 C -0.137 4.137 7 C -0.090 4.090 8 C -0.159 4.159 9 C 0.551 3.449 10 O -0.556 6.556 11 N -0.713 5.713 12 C 0.176 3.824 13 C -0.060 4.060 14 C -0.169 4.169 15 C -0.068 4.068 16 C -0.234 4.234 17 C 0.113 3.887 18 O -0.232 6.232 19 C -0.413 4.413 20 H 0.104 0.896 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.263 1.263 25 H -0.273 1.273 26 H -0.252 1.252 27 C -0.182 4.182 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.135 0.865 37 H 0.408 0.592 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.122 0.878 43 H 0.272 0.728 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.953 2.668 20.147 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.127 4.127 3 C -0.038 4.038 4 C -0.152 4.152 5 C -0.104 4.104 6 C -0.155 4.155 7 C -0.109 4.109 8 C -0.162 4.162 9 C 0.340 3.660 10 O -0.437 6.437 11 N -0.365 5.365 12 C 0.053 3.947 13 C -0.060 4.060 14 C -0.188 4.188 15 C -0.086 4.086 16 C -0.253 4.253 17 C 0.063 3.937 18 O -0.139 6.139 19 C -0.489 4.489 20 H 0.121 0.879 21 C -0.220 4.220 22 N -0.559 5.559 23 Si 0.837 3.163 24 H -0.187 1.187 25 H -0.198 1.198 26 H -0.175 1.175 27 C -0.202 4.202 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.167 0.833 34 H 0.174 0.826 35 H 0.169 0.831 36 H 0.153 0.847 37 H 0.245 0.755 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.139 0.861 43 H 0.081 0.919 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.927 1.660 20.092 23.424 hybrid contribution 0.888 0.647 -1.120 1.569 sum -11.039 2.307 18.971 22.070 Atomic orbital electron populations 1.21532 0.94232 1.01715 1.00980 1.20719 0.96991 0.92033 1.02974 1.20224 0.94988 0.96426 0.92127 1.21347 1.00159 0.96090 0.97561 1.21753 0.95507 0.93839 0.99346 1.21445 1.00524 1.01567 0.91961 1.21549 0.96104 0.93272 0.99945 1.19819 1.07270 0.96209 0.92892 1.18625 0.78201 0.85012 0.84136 1.90704 1.45195 1.20397 1.87411 1.45985 1.63465 1.21671 1.05391 1.20047 1.00947 0.93873 0.79851 1.19445 0.92701 0.97403 0.96472 1.20994 1.00143 0.97784 0.99847 1.21165 0.94970 0.98044 0.94445 1.21381 0.95866 1.03220 1.04878 1.19842 0.86566 0.95007 0.92282 1.83950 1.30650 1.50378 1.48908 1.21833 0.99693 1.11381 1.15972 0.87864 1.26592 0.93885 1.00559 1.01009 1.70188 1.04810 1.37399 1.43535 0.84592 0.79103 0.76357 0.76214 1.18747 1.19821 1.17518 1.20214 0.98830 1.02946 0.98181 0.92371 0.94068 0.92294 0.90906 0.90167 0.83265 0.82568 0.83117 0.84740 0.75542 0.91791 0.89290 0.83469 0.83264 0.86073 0.91867 0.87608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.43 71.98 0.68 -1.99 16 2 C -0.09 -1.95 5.32 29.85 0.16 -1.80 16 3 C -0.04 -0.79 5.17 -19.61 -0.10 -0.89 16 4 C -0.13 -2.11 9.66 22.23 0.21 -1.90 16 5 C -0.09 -1.15 10.04 22.33 0.22 -0.93 16 6 C -0.14 -2.06 10.03 22.23 0.22 -1.84 16 7 C -0.09 -1.73 9.53 22.53 0.21 -1.52 16 8 C -0.16 -3.75 5.87 -20.09 -0.12 -3.87 16 9 C 0.55 15.23 7.64 86.79 0.66 15.89 16 10 O -0.56 -17.86 11.60 -3.86 -0.04 -17.90 16 11 N -0.71 -18.44 5.50 -469.72 -2.58 -21.02 16 12 C 0.18 4.90 5.80 85.63 0.50 5.39 16 13 C -0.06 -1.90 5.25 -19.88 -0.10 -2.01 16 14 C -0.17 -4.79 9.70 22.30 0.22 -4.58 16 15 C -0.07 -2.13 10.04 22.25 0.22 -1.91 16 16 C -0.23 -9.59 9.17 22.39 0.21 -9.38 16 17 C 0.11 5.44 6.65 22.58 0.15 5.59 16 18 O -0.23 -13.71 9.76 -22.70 -0.22 -13.93 16 19 C -0.41 -23.52 9.49 67.92 0.64 -22.87 16 20 H 0.10 5.34 5.21 -2.91 -0.02 5.32 16 21 C -0.02 -1.29 5.49 84.84 0.47 -0.82 16 22 N -0.92 -56.16 13.67 21.61 0.30 -55.86 16 23 Si 1.02 42.05 29.55 68.60 2.03 44.08 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 27 C -0.18 -7.49 9.65 22.39 0.22 -7.28 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.04 1.05 6.59 -2.38 -0.02 1.03 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.99 5.95 -2.39 -0.01 1.97 16 32 H 0.08 1.36 8.03 -2.39 -0.02 1.34 16 33 H 0.15 1.60 8.05 -2.91 -0.02 1.58 16 34 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 35 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 36 H 0.13 2.25 6.45 -2.91 -0.02 2.23 16 37 H 0.41 9.46 6.53 -92.71 -0.61 8.86 16 38 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 39 H 0.09 2.26 8.08 -2.38 -0.02 2.24 16 40 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 41 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 42 H 0.12 5.05 5.64 -2.91 -0.02 5.03 16 43 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -72.79 368.80 4.57 -68.22 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.43 Total: 33.12 kcal Atomic # 6 Polarization: -41.36 SS G_CDS: 4.67 Total: -36.69 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -2.29 Total: -76.89 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.27 Total: -31.84 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -72.79 4.57 -68.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153756817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.384 kcal (2) G-P(sol) polarization free energy of solvation -72.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds