Wall clock time and date at job start Tue Mar 31 2020 13:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38261 * 119.99758 * 2 1 4 4 C 1.38210 * 119.99889 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00140 * 359.76999 * 4 3 2 6 6 C 1.38215 * 119.99698 * 0.46130 * 5 4 3 7 7 S 1.76201 * 120.00058 * 179.78992 * 6 5 4 8 8 O 1.42100 * 104.27749 * 153.65249 * 7 6 5 9 9 O 1.42098 * 104.27812 * 25.79642 * 7 6 5 10 10 C 1.81397 * 104.44931 * 269.72566 * 7 6 5 11 11 C 1.52998 * 109.47162 * 179.97438 * 10 7 6 12 12 C 1.52998 * 109.47351 * 180.02562 * 11 10 7 13 13 N 1.46901 * 109.47600 * 180.02562 * 12 11 10 14 14 C 1.46904 * 110.99837 * 66.04313 * 13 12 11 15 15 C 1.46897 * 111.00395 * 189.99939 * 13 12 11 16 16 H 1.08997 * 109.47139 * 300.00200 * 15 13 12 17 17 C 1.53000 * 109.46761 * 59.99587 * 15 13 12 18 18 C 1.50693 * 109.47362 * 179.97438 * 15 13 12 19 19 H 1.08009 * 120.00046 * 354.31814 * 18 15 13 20 20 C 1.37876 * 120.00344 * 174.32365 * 18 15 13 21 21 N 1.31513 * 120.00472 * 155.04852 * 20 18 15 22 22 Si 1.86809 * 119.99627 * 335.31965 * 20 18 15 23 23 H 1.48494 * 109.46841 * 179.72766 * 22 20 18 24 24 H 1.48497 * 109.46901 * 299.72684 * 22 20 18 25 25 H 1.48501 * 109.46726 * 59.72958 * 22 20 18 26 26 C 1.38211 * 119.99979 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47285 * 270.02133 * 1 2 3 28 28 H 1.09002 * 109.47062 * 30.02604 * 1 2 3 29 29 H 1.09004 * 109.47191 * 150.02359 * 1 2 3 30 30 H 1.07998 * 119.99905 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.00407 * 179.97438 * 4 3 2 32 32 H 1.07996 * 120.00308 * 180.25340 * 5 4 3 33 33 H 1.09002 * 109.47013 * 60.00026 * 10 7 6 34 34 H 1.08997 * 109.47054 * 299.99984 * 10 7 6 35 35 H 1.09002 * 109.46966 * 60.00205 * 11 10 7 36 36 H 1.08997 * 109.47293 * 300.00045 * 11 10 7 37 37 H 1.08996 * 109.47207 * 59.99836 * 12 11 10 38 38 H 1.09007 * 109.46938 * 300.00048 * 12 11 10 39 39 H 1.09002 * 109.46603 * 183.95579 * 14 13 12 40 40 H 1.08996 * 109.47049 * 303.95494 * 14 13 12 41 41 H 1.08994 * 109.47094 * 63.95767 * 14 13 12 42 42 H 1.08998 * 109.47417 * 291.91531 * 17 15 13 43 43 H 1.09001 * 109.47132 * 51.91876 * 17 15 13 44 44 H 1.09002 * 109.46962 * 171.91728 * 17 15 13 45 45 H 0.97000 * 119.99785 * 355.21976 * 21 20 18 46 46 H 1.07994 * 120.00025 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0001 0.0059 6 6 3.5806 -1.1969 0.0010 7 16 4.4616 -2.7228 0.0023 8 8 3.5656 -3.6443 0.6082 9 8 5.7081 -2.4074 0.6073 10 6 4.6880 -3.1162 -1.7540 11 6 5.4506 -4.4358 -1.8869 12 6 5.6422 -4.7673 -3.3682 13 7 6.3739 -6.0347 -3.4959 14 6 5.5748 -7.1575 -2.9870 15 6 6.7838 -6.2682 -4.8870 16 1 5.9003 -6.3090 -5.5241 17 6 7.6933 -5.1279 -5.3489 18 6 7.5303 -7.5741 -4.9784 19 1 7.7651 -8.1259 -4.0800 20 6 7.9138 -8.0644 -6.2086 21 7 8.9386 -8.8836 -6.2997 22 14 6.9823 -7.5591 -7.7470 23 1 7.5923 -8.2136 -8.9322 24 1 5.5628 -7.9779 -7.6261 25 1 7.0517 -6.0843 -7.9056 26 6 2.1980 -1.1969 0.0005 27 1 -0.3634 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6582 2.1327 -0.0004 31 1 4.1204 2.1327 0.0001 32 1 5.3516 0.0001 0.0104 33 1 5.2553 -2.3191 -2.2347 34 1 3.7139 -3.2091 -2.2340 35 1 4.8837 -5.2331 -1.4062 36 1 6.4248 -4.3425 -1.4070 37 1 6.2093 -3.9700 -3.8486 38 1 4.6681 -4.8606 -3.8486 39 1 6.1660 -8.0723 -3.0283 40 1 5.2846 -6.9587 -1.9553 41 1 4.6810 -7.2745 -3.5997 42 1 7.1142 -4.2073 -5.4201 43 1 8.5017 -4.9940 -4.6300 44 1 8.1121 -5.3701 -6.3256 45 1 9.4672 -9.0884 -5.5126 46 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155343525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:55 Heat of formation + Delta-G solvation = -45.839277 kcal Electronic energy + Delta-G solvation = -25133.555660 eV Core-core repulsion = 21536.488967 eV Total energy + Delta-G solvation = -3597.066692 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.73926 -37.63536 -37.25243 -36.08724 -34.11341 -33.35033 -32.30722 -31.67839 -29.85965 -27.46395 -27.21148 -24.47232 -24.19406 -23.53766 -22.24417 -21.08440 -19.37014 -18.95856 -17.85280 -17.43980 -16.59042 -16.48367 -16.21939 -15.72676 -15.14756 -14.75741 -14.54906 -14.31474 -14.14315 -13.82816 -13.65223 -13.47333 -12.78955 -12.75384 -12.74406 -12.55127 -12.45709 -12.23474 -12.18431 -12.13035 -11.84279 -11.69803 -11.64815 -11.37428 -11.06782 -10.95629 -10.84321 -10.62041 -10.32584 -10.22022 -10.04882 -9.82488 -9.71579 -9.22853 -8.91352 -8.21420 -7.39056 -6.47929 -4.02914 -0.16687 0.44712 0.84848 2.68147 3.02108 3.37344 3.41468 3.59158 3.68003 3.89708 4.29276 4.35217 4.37007 4.49394 4.55412 4.63114 4.80656 4.83118 4.98797 5.05372 5.12386 5.13998 5.20290 5.27855 5.36687 5.43070 5.58332 5.61362 5.66981 5.79791 5.82498 5.97552 6.01260 6.10570 6.19722 6.28929 6.41170 6.43436 6.58395 6.61905 6.85168 6.93281 7.31907 7.74870 7.98862 8.33584 8.43932 8.98872 9.60971 10.90404 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022354 B = 0.002452 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.255950 B =11416.289286 C =11688.427814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.108 4.108 3 C -0.070 4.070 4 C -0.137 4.137 5 C -0.030 4.030 6 C -0.654 4.654 7 S 2.493 3.507 8 O -0.937 6.937 9 O -0.935 6.935 10 C -0.597 4.597 11 C -0.112 4.112 12 C 0.056 3.944 13 N -0.531 5.531 14 C 0.034 3.966 15 C 0.191 3.809 16 H -0.011 1.011 17 C -0.140 4.140 18 C -0.599 4.599 19 H 0.066 0.934 20 C 0.038 3.962 21 N -0.896 5.896 22 Si 1.034 2.966 23 H -0.285 1.285 24 H -0.286 1.286 25 H -0.279 1.279 26 C -0.026 4.026 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.026 0.974 39 H 0.080 0.920 40 H 0.047 0.953 41 H 0.013 0.987 42 H 0.019 0.981 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.271 0.729 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.965 21.470 11.490 29.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.109 4.109 3 C -0.088 4.088 4 C -0.156 4.156 5 C -0.049 4.049 6 C -0.740 4.740 7 S 2.674 3.326 8 O -0.934 6.934 9 O -0.932 6.932 10 C -0.728 4.728 11 C -0.151 4.151 12 C -0.073 4.073 13 N -0.256 5.256 14 C -0.114 4.114 15 C 0.083 3.917 16 H 0.007 0.993 17 C -0.198 4.198 18 C -0.637 4.637 19 H 0.084 0.916 20 C -0.169 4.169 21 N -0.529 5.529 22 Si 0.862 3.138 23 H -0.210 1.210 24 H -0.212 1.212 25 H -0.206 1.206 26 C -0.045 4.045 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.161 0.839 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.045 0.955 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.032 0.968 42 H 0.038 0.962 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.364 20.793 10.872 28.047 hybrid contribution -1.014 0.937 0.509 1.472 sum -16.378 21.730 11.381 29.496 Atomic orbital electron populations 1.20834 0.90373 1.03298 1.02827 1.20083 0.96682 0.93108 1.01011 1.21382 0.94483 0.97843 0.95064 1.21313 0.94444 0.98395 1.01399 1.21010 1.00555 0.91129 0.92194 1.30715 1.06027 1.19790 1.17442 1.05590 0.74622 0.74193 0.78167 1.93567 1.64943 1.61454 1.73464 1.93575 1.42617 1.83555 1.73446 1.30261 1.10749 1.08475 1.23287 1.21437 1.00573 0.92291 1.00834 1.22076 0.96833 0.95120 0.93319 1.62023 1.39207 1.00353 1.23967 1.22284 0.95816 0.96040 0.97308 1.19564 0.93085 0.95972 0.83037 0.99333 1.22180 1.00035 0.96530 1.01103 1.21889 1.40313 1.06200 0.95301 0.91604 1.25611 0.95325 0.94962 1.01001 1.70839 1.13645 1.35687 1.32748 0.84167 0.76357 0.76502 0.76733 1.21030 1.21248 1.20556 1.20888 0.92011 0.98962 0.92650 0.90775 0.91226 0.90992 0.85285 0.84923 0.83946 0.84499 0.84768 0.90239 0.89299 0.90404 0.95549 0.90163 0.93382 0.96799 0.96167 0.92816 0.92839 0.91954 0.84060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.01 36.00 0.36 -0.26 16 2 C -0.11 -0.84 5.88 -104.62 -0.62 -1.45 16 3 C -0.07 -0.49 9.70 -39.58 -0.38 -0.87 16 4 C -0.14 -1.01 10.05 -39.58 -0.40 -1.41 16 5 C -0.03 -0.27 9.47 -39.58 -0.37 -0.64 16 6 C -0.65 -6.42 5.66 -39.58 -0.22 -6.65 16 7 S 2.49 27.73 5.16 -107.50 -0.55 27.17 16 8 O -0.94 -12.95 17.13 -57.54 -0.99 -13.94 16 9 O -0.93 -13.07 17.12 -57.54 -0.98 -14.06 16 10 C -0.60 -5.72 5.98 37.16 0.22 -5.50 16 11 C -0.11 -1.50 5.15 -26.73 -0.14 -1.64 16 12 C 0.06 0.92 4.77 -3.82 -0.02 0.90 16 13 N -0.53 -11.00 4.62 -236.29 -1.09 -12.09 16 14 C 0.03 0.66 9.05 60.07 0.54 1.20 16 15 C 0.19 4.51 1.66 -68.87 -0.11 4.40 16 16 H -0.01 -0.26 6.70 -51.93 -0.35 -0.61 16 17 C -0.14 -3.08 8.47 37.16 0.31 -2.77 16 18 C -0.60 -16.54 7.98 -34.44 -0.27 -16.82 16 19 H 0.07 1.97 6.88 -52.48 -0.36 1.61 16 20 C 0.04 1.07 5.15 -17.82 -0.09 0.97 16 21 N -0.90 -27.08 13.70 55.43 0.76 -26.32 16 22 Si 1.03 24.83 26.49 -169.99 -4.50 20.32 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.24 6.30 56.52 0.36 -5.89 16 26 C -0.03 -0.24 9.13 -39.58 -0.36 -0.60 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 29 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 31 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.14 1.11 7.56 -52.49 -0.40 0.71 16 33 H 0.14 1.03 8.14 -51.92 -0.42 0.60 16 34 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.04 6.47 -51.93 -0.34 0.70 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.22 6.00 -51.93 -0.31 0.91 16 38 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 39 H 0.08 1.73 6.34 -51.93 -0.33 1.40 16 40 H 0.05 0.79 6.30 -51.93 -0.33 0.46 16 41 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.02 0.37 6.64 -51.93 -0.34 0.02 16 43 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.05 1.22 5.67 -51.93 -0.29 0.93 16 45 H 0.27 8.17 8.73 -40.82 -0.36 7.81 16 46 H 0.14 1.14 7.57 -52.49 -0.40 0.74 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -35.06 376.96 -10.52 -45.58 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -7.29 Total: -1.23 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: -1.55 Total: -31.12 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.33 Total: -38.41 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -1.97 Total: -27.99 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -4.50 Total: 20.32 kcal Atomic # 16 Polarization: 27.73 SS G_CDS: -0.55 Total: 27.17 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.06 -10.52 -45.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155343525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.260 kcal (2) G-P(sol) polarization free energy of solvation -35.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds