Wall clock time and date at job start Tue Mar 31 2020 13:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38261 * 119.99758 * 2 1 4 4 C 1.38210 * 119.99889 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00140 * 359.76999 * 4 3 2 6 6 C 1.38215 * 119.99698 * 0.46130 * 5 4 3 7 7 S 1.76201 * 120.00058 * 179.78992 * 6 5 4 8 8 O 1.42100 * 104.27749 * 153.65249 * 7 6 5 9 9 O 1.42098 * 104.27812 * 25.79642 * 7 6 5 10 10 C 1.81397 * 104.44931 * 269.72566 * 7 6 5 11 11 C 1.52998 * 109.47162 * 179.97438 * 10 7 6 12 12 C 1.52998 * 109.47351 * 180.02562 * 11 10 7 13 13 N 1.46901 * 109.47600 * 180.02562 * 12 11 10 14 14 C 1.46904 * 110.99837 * 66.04313 * 13 12 11 15 15 C 1.46897 * 111.00395 * 189.99939 * 13 12 11 16 16 H 1.08997 * 109.47139 * 300.00200 * 15 13 12 17 17 C 1.53000 * 109.46761 * 59.99587 * 15 13 12 18 18 C 1.50693 * 109.47362 * 179.97438 * 15 13 12 19 19 H 1.08009 * 120.00046 * 354.31814 * 18 15 13 20 20 C 1.37876 * 120.00344 * 174.32365 * 18 15 13 21 21 N 1.31513 * 120.00472 * 155.04852 * 20 18 15 22 22 Si 1.86809 * 119.99627 * 335.31965 * 20 18 15 23 23 H 1.48494 * 109.46841 * 179.72766 * 22 20 18 24 24 H 1.48497 * 109.46901 * 299.72684 * 22 20 18 25 25 H 1.48501 * 109.46726 * 59.72958 * 22 20 18 26 26 C 1.38211 * 119.99979 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47285 * 270.02133 * 1 2 3 28 28 H 1.09002 * 109.47062 * 30.02604 * 1 2 3 29 29 H 1.09004 * 109.47191 * 150.02359 * 1 2 3 30 30 H 1.07998 * 119.99905 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.00407 * 179.97438 * 4 3 2 32 32 H 1.07996 * 120.00308 * 180.25340 * 5 4 3 33 33 H 1.09002 * 109.47013 * 60.00026 * 10 7 6 34 34 H 1.08997 * 109.47054 * 299.99984 * 10 7 6 35 35 H 1.09002 * 109.46966 * 60.00205 * 11 10 7 36 36 H 1.08997 * 109.47293 * 300.00045 * 11 10 7 37 37 H 1.08996 * 109.47207 * 59.99836 * 12 11 10 38 38 H 1.09007 * 109.46938 * 300.00048 * 12 11 10 39 39 H 1.09002 * 109.46603 * 183.95579 * 14 13 12 40 40 H 1.08996 * 109.47049 * 303.95494 * 14 13 12 41 41 H 1.08994 * 109.47094 * 63.95767 * 14 13 12 42 42 H 1.08998 * 109.47417 * 291.91531 * 17 15 13 43 43 H 1.09001 * 109.47132 * 51.91876 * 17 15 13 44 44 H 1.09002 * 109.46962 * 171.91728 * 17 15 13 45 45 H 0.97000 * 119.99785 * 355.21976 * 21 20 18 46 46 H 1.07994 * 120.00025 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0001 0.0059 6 6 3.5806 -1.1969 0.0010 7 16 4.4616 -2.7228 0.0023 8 8 3.5656 -3.6443 0.6082 9 8 5.7081 -2.4074 0.6073 10 6 4.6880 -3.1162 -1.7540 11 6 5.4506 -4.4358 -1.8869 12 6 5.6422 -4.7673 -3.3682 13 7 6.3739 -6.0347 -3.4959 14 6 5.5748 -7.1575 -2.9870 15 6 6.7838 -6.2682 -4.8870 16 1 5.9003 -6.3090 -5.5241 17 6 7.6933 -5.1279 -5.3489 18 6 7.5303 -7.5741 -4.9784 19 1 7.7651 -8.1259 -4.0800 20 6 7.9138 -8.0644 -6.2086 21 7 8.9386 -8.8836 -6.2997 22 14 6.9823 -7.5591 -7.7470 23 1 7.5923 -8.2136 -8.9322 24 1 5.5628 -7.9779 -7.6261 25 1 7.0517 -6.0843 -7.9056 26 6 2.1980 -1.1969 0.0005 27 1 -0.3634 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6582 2.1327 -0.0004 31 1 4.1204 2.1327 0.0001 32 1 5.3516 0.0001 0.0104 33 1 5.2553 -2.3191 -2.2347 34 1 3.7139 -3.2091 -2.2340 35 1 4.8837 -5.2331 -1.4062 36 1 6.4248 -4.3425 -1.4070 37 1 6.2093 -3.9700 -3.8486 38 1 4.6681 -4.8606 -3.8486 39 1 6.1660 -8.0723 -3.0283 40 1 5.2846 -6.9587 -1.9553 41 1 4.6810 -7.2745 -3.5997 42 1 7.1142 -4.2073 -5.4201 43 1 8.5017 -4.9940 -4.6300 44 1 8.1121 -5.3701 -6.3256 45 1 9.4672 -9.0884 -5.5126 46 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155343525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:55 Heat of formation + Delta-G solvation = -70.715538 kcal Electronic energy + Delta-G solvation = -25134.634375 eV Core-core repulsion = 21536.488967 eV Total energy + Delta-G solvation = -3598.145408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.30048 -39.18620 -38.21122 -37.05048 -35.61103 -34.08355 -33.86861 -32.26428 -31.60515 -28.60305 -27.92770 -26.28437 -25.62630 -24.27217 -22.86706 -22.34634 -21.06386 -19.84461 -19.52993 -18.55208 -17.52312 -17.33350 -17.01781 -16.78176 -16.25486 -15.82065 -15.73620 -15.37653 -15.21990 -15.15481 -14.76190 -14.23493 -14.20312 -14.11041 -13.51931 -13.46484 -13.30790 -13.23696 -13.15768 -13.10264 -13.07394 -13.03939 -12.91217 -12.65108 -12.38069 -12.21819 -12.17960 -11.96541 -11.87792 -11.68674 -11.55418 -11.30913 -10.95497 -10.36594 -10.31921 -9.79484 -9.01180 -8.72801 -6.27576 -0.99272 -0.18507 0.27053 1.46140 1.52050 1.71942 1.88893 2.40621 2.50882 2.85689 3.02394 3.11157 3.20311 3.70061 3.75231 3.84347 3.88242 4.05728 4.06297 4.27180 4.29655 4.37229 4.45398 4.52812 4.54728 4.59998 4.67703 4.76698 4.79116 4.81050 4.82827 4.90384 4.91735 4.96284 5.04611 5.08028 5.19768 5.21922 5.22679 5.28814 5.45189 5.55079 5.87562 5.89687 6.10481 6.23730 6.61668 6.77436 7.45583 8.64024 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022354 B = 0.002452 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.255950 B =11416.289286 C =11688.427814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.114 4.114 3 C -0.070 4.070 4 C -0.139 4.139 5 C -0.049 4.049 6 C -0.658 4.658 7 S 2.500 3.500 8 O -0.973 6.973 9 O -0.972 6.972 10 C -0.581 4.581 11 C -0.117 4.117 12 C 0.054 3.946 13 N -0.551 5.551 14 C 0.037 3.963 15 C 0.189 3.811 16 H -0.007 1.007 17 C -0.136 4.136 18 C -0.599 4.599 19 H 0.025 0.975 20 C -0.014 4.014 21 N -0.931 5.931 22 Si 1.076 2.924 23 H -0.289 1.289 24 H -0.270 1.270 25 H -0.247 1.247 26 C -0.046 4.046 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.147 0.853 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.045 0.955 40 H 0.076 0.924 41 H 0.019 0.981 42 H 0.060 0.940 43 H 0.043 0.957 44 H 0.041 0.959 45 H 0.253 0.747 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.541 25.078 10.598 32.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.115 4.115 3 C -0.087 4.087 4 C -0.157 4.157 5 C -0.068 4.068 6 C -0.747 4.747 7 S 2.686 3.314 8 O -0.970 6.970 9 O -0.969 6.969 10 C -0.713 4.713 11 C -0.156 4.156 12 C -0.075 4.075 13 N -0.275 5.275 14 C -0.112 4.112 15 C 0.081 3.919 16 H 0.010 0.990 17 C -0.194 4.194 18 C -0.637 4.637 19 H 0.043 0.957 20 C -0.213 4.213 21 N -0.566 5.566 22 Si 0.898 3.102 23 H -0.215 1.215 24 H -0.196 1.196 25 H -0.171 1.171 26 C -0.065 4.065 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.176 0.824 31 H 0.176 0.824 32 H 0.165 0.835 33 H 0.182 0.818 34 H 0.181 0.819 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.038 0.962 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.940 24.397 10.031 31.901 hybrid contribution -0.249 -0.141 0.903 0.948 sum -18.189 24.256 10.935 32.230 Atomic orbital electron populations 1.20905 0.88729 1.04317 1.03455 1.20428 0.98025 0.92885 1.00178 1.21795 0.94543 0.98792 0.93604 1.21671 0.94961 0.98786 1.00299 1.21242 1.01088 0.91549 0.92895 1.30337 1.06212 1.18841 1.19287 1.05021 0.73581 0.74177 0.78628 1.93517 1.65500 1.63017 1.74946 1.93524 1.44269 1.84177 1.74979 1.30123 1.12247 1.07204 1.21757 1.21398 1.00922 0.94359 0.98919 1.22196 0.97135 0.92846 0.95301 1.61908 1.41129 1.02409 1.22067 1.22227 0.95127 0.94621 0.99184 1.19447 0.92995 0.94330 0.85084 0.99011 1.22064 0.99809 0.97531 0.99971 1.22075 1.39968 1.07894 0.93755 0.95687 1.27025 0.95256 0.94463 1.04602 1.70970 1.15445 1.38186 1.31976 0.83636 0.75639 0.78196 0.72760 1.21515 1.19577 1.17077 1.21091 0.91928 0.99951 0.93563 0.90264 0.89544 0.90717 0.82369 0.82412 0.83512 0.81789 0.81945 0.90331 0.90124 0.89348 0.94014 0.93609 0.90536 0.96242 0.92126 0.93794 0.94024 0.93772 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.01 71.24 0.71 -0.21 16 2 C -0.11 -1.49 5.88 -19.87 -0.12 -1.61 16 3 C -0.07 -0.75 9.70 22.27 0.22 -0.53 16 4 C -0.14 -1.66 10.05 22.27 0.22 -1.44 16 5 C -0.05 -0.79 9.47 22.27 0.21 -0.58 16 6 C -0.66 -12.08 5.66 22.27 0.13 -11.96 16 7 S 2.50 53.84 5.16 -56.49 -0.29 53.55 16 8 O -0.97 -26.88 17.13 -127.65 -2.19 -29.06 16 9 O -0.97 -27.29 17.12 -127.65 -2.19 -29.48 16 10 C -0.58 -9.52 5.98 71.98 0.43 -9.09 16 11 C -0.12 -2.88 5.15 30.59 0.16 -2.73 16 12 C 0.05 1.60 4.77 86.30 0.41 2.01 16 13 N -0.55 -22.19 4.62 -901.49 -4.17 -26.36 16 14 C 0.04 1.42 9.05 127.69 1.16 2.58 16 15 C 0.19 8.74 1.66 44.17 0.07 8.81 16 16 H -0.01 -0.34 6.70 -2.39 -0.02 -0.36 16 17 C -0.14 -5.65 8.47 71.98 0.61 -5.04 16 18 C -0.60 -33.84 7.98 25.60 0.20 -33.63 16 19 H 0.02 1.58 6.88 -2.91 -0.02 1.56 16 20 C -0.01 -0.80 5.15 84.65 0.44 -0.37 16 21 N -0.93 -58.19 13.70 21.45 0.29 -57.90 16 22 Si 1.08 49.21 26.49 68.60 1.82 51.02 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.25 -9.94 6.30 99.48 0.63 -9.32 16 26 C -0.05 -0.78 9.13 22.27 0.20 -0.58 16 27 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.09 0.39 8.09 -2.39 -0.02 0.37 16 29 H 0.07 0.55 8.09 -2.38 -0.02 0.53 16 30 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 31 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 32 H 0.15 2.12 7.56 -2.91 -0.02 2.10 16 33 H 0.16 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 1.93 6.47 -2.39 -0.02 1.91 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.09 2.42 6.00 -2.39 -0.01 2.40 16 38 H 0.04 1.13 8.12 -2.38 -0.02 1.11 16 39 H 0.05 2.05 6.34 -2.39 -0.02 2.04 16 40 H 0.08 2.47 6.30 -2.39 -0.02 2.46 16 41 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 2.01 6.64 -2.39 -0.02 2.00 16 43 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.04 1.80 5.67 -2.39 -0.01 1.79 16 45 H 0.25 16.18 8.73 -92.71 -0.81 15.37 16 46 H 0.14 2.20 7.57 -2.91 -0.02 2.18 16 Total: -1.00 -78.75 376.96 -0.82 -79.58 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.84 Total: 13.01 kcal Atomic # 6 Polarization: -59.41 SS G_CDS: 5.05 Total: -54.36 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -3.87 Total: -84.26 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -4.37 Total: -58.54 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 1.82 Total: 51.02 kcal Atomic # 16 Polarization: 53.84 SS G_CDS: -0.29 Total: 53.55 kcal Total: -78.75 -0.82 -79.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155343525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.860 kcal (2) G-P(sol) polarization free energy of solvation -78.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds