Wall clock time and date at job start Tue Mar 31 2020 13:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38259 * 120.00261 * 2 1 4 4 C 1.38210 * 120.00053 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99973 * 359.76994 * 4 3 2 6 6 C 1.38213 * 119.99682 * 0.46004 * 5 4 3 7 7 S 1.76209 * 119.99517 * 179.79117 * 6 5 4 8 8 O 1.42099 * 104.27596 * 153.65700 * 7 6 5 9 9 O 1.42093 * 104.27644 * 25.79827 * 7 6 5 10 10 C 1.81404 * 104.44776 * 269.72660 * 7 6 5 11 11 C 1.52996 * 109.46918 * 180.02562 * 10 7 6 12 12 C 1.53002 * 109.46891 * 180.02562 * 11 10 7 13 13 N 1.46906 * 109.47053 * 179.97438 * 12 11 10 14 14 C 1.46901 * 110.99755 * 66.04236 * 13 12 11 15 15 C 1.46893 * 110.99932 * 189.99865 * 13 12 11 16 16 H 1.09001 * 109.47601 * 54.99559 * 15 13 12 17 17 C 1.53002 * 109.47132 * 294.99616 * 15 13 12 18 18 C 1.50701 * 109.47411 * 174.99937 * 15 13 12 19 19 H 1.08005 * 119.99575 * 0.02562 * 18 15 13 20 20 C 1.37868 * 120.00357 * 179.97438 * 18 15 13 21 21 N 1.31513 * 120.00368 * 0.02562 * 20 18 15 22 22 Si 1.86808 * 120.00067 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47147 * 60.00034 * 22 20 18 24 24 H 1.48496 * 109.46911 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.46709 * 299.99996 * 22 20 18 26 26 C 1.38217 * 119.99973 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.47329 * 270.02131 * 1 2 3 28 28 H 1.09001 * 109.47154 * 30.02218 * 1 2 3 29 29 H 1.09005 * 109.47478 * 150.02314 * 1 2 3 30 30 H 1.07998 * 119.99905 * 359.97438 * 3 2 1 31 31 H 1.07993 * 120.00011 * 179.97438 * 4 3 2 32 32 H 1.08000 * 119.99655 * 180.25565 * 5 4 3 33 33 H 1.09001 * 109.46975 * 60.00229 * 10 7 6 34 34 H 1.09004 * 109.47147 * 300.00192 * 10 7 6 35 35 H 1.09001 * 109.47372 * 60.00152 * 11 10 7 36 36 H 1.09004 * 109.47108 * 299.99897 * 11 10 7 37 37 H 1.08992 * 109.47056 * 59.99654 * 12 11 10 38 38 H 1.09004 * 109.47006 * 299.99770 * 12 11 10 39 39 H 1.08995 * 109.47046 * 60.00231 * 14 13 12 40 40 H 1.09008 * 109.46903 * 180.02562 * 14 13 12 41 41 H 1.08999 * 109.47457 * 299.99830 * 14 13 12 42 42 H 1.09002 * 109.46864 * 60.00119 * 17 15 13 43 43 H 1.09000 * 109.46938 * 180.02562 * 17 15 13 44 44 H 1.09002 * 109.47310 * 300.00190 * 17 15 13 45 45 H 0.96999 * 120.00359 * 179.97438 * 21 20 18 46 46 H 1.08006 * 120.00046 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0059 6 6 3.5805 -1.1970 0.0011 7 16 4.4615 -2.7230 0.0023 8 8 3.5654 -3.6445 0.6082 9 8 5.7079 -2.4075 0.6073 10 6 4.6879 -3.1164 -1.7540 11 6 5.4494 -4.4367 -1.8869 12 6 5.6409 -4.7681 -3.3682 13 7 6.3727 -6.0356 -3.4958 14 6 5.5736 -7.1583 -2.9869 15 6 6.7825 -6.2690 -4.8870 16 1 7.3568 -5.4145 -5.2449 17 6 5.5400 -6.4506 -5.7611 18 6 7.6328 -7.5112 -4.9585 19 1 7.8469 -8.0714 -4.0602 20 6 8.1365 -7.9330 -6.1705 21 7 7.8754 -7.2512 -7.2644 22 14 9.1899 -9.4732 -6.2592 23 1 8.4072 -10.6371 -5.7714 24 1 9.6044 -9.7091 -7.6655 25 1 10.3961 -9.2973 -5.4111 26 6 2.1980 -1.1970 0.0005 27 1 -0.3634 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6583 2.1326 -0.0004 31 1 4.1204 2.1325 0.0001 32 1 5.3516 -0.0001 0.0105 33 1 5.2553 -2.3193 -2.2346 34 1 3.7137 -3.2093 -2.2341 35 1 4.8817 -5.2335 -1.4063 36 1 6.4237 -4.3442 -1.4067 37 1 6.2087 -3.9713 -3.8483 38 1 4.6669 -4.8605 -3.8487 39 1 4.6464 -7.2313 -3.5551 40 1 6.1390 -8.0842 -3.0928 41 1 5.3427 -6.9924 -1.9346 42 1 4.9250 -5.5522 -5.7094 43 1 5.8442 -6.6243 -6.7933 44 1 4.9657 -7.3052 -5.4032 45 1 8.2301 -7.5478 -8.1171 46 1 1.6580 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155343648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:58 Heat of formation + Delta-G solvation = -45.980839 kcal Electronic energy + Delta-G solvation = -25082.312568 eV Core-core repulsion = 21485.239737 eV Total energy + Delta-G solvation = -3597.072831 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.69369 -37.59914 -37.19475 -36.03080 -34.09233 -33.30631 -32.23409 -31.63167 -28.75300 -27.41817 -26.85993 -25.16899 -24.42461 -23.52901 -22.20919 -21.21394 -19.25830 -18.90506 -17.78571 -16.55492 -16.42518 -16.18204 -16.09545 -15.59811 -15.10435 -14.84348 -14.61024 -14.26748 -14.22557 -13.61443 -13.60157 -13.35954 -12.77855 -12.74242 -12.66385 -12.48778 -12.33032 -12.15943 -12.08422 -11.97734 -11.66604 -11.60312 -11.41195 -11.07661 -11.01256 -10.83642 -10.75130 -10.66712 -10.47184 -10.27229 -10.02484 -9.78991 -9.63776 -9.18320 -8.88735 -8.39143 -7.18833 -6.01568 -4.05300 -0.10396 0.49590 0.89376 2.74098 3.06838 3.33147 3.37175 3.40491 3.74038 3.95698 4.34400 4.38397 4.40160 4.51979 4.59874 4.70250 4.85019 4.87589 5.10618 5.17608 5.18309 5.23870 5.30909 5.32028 5.45965 5.49270 5.65433 5.70457 5.72218 5.86873 5.92341 6.01863 6.16138 6.22883 6.36630 6.43500 6.45721 6.65756 6.80850 6.89552 7.10332 7.46736 7.69859 7.82065 8.10025 8.36235 8.58109 9.00297 9.59783 11.05599 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.025472 B = 0.002303 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.961893 B =12156.188193 C =12363.181010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.108 4.108 3 C -0.070 4.070 4 C -0.137 4.137 5 C -0.030 4.030 6 C -0.653 4.653 7 S 2.493 3.507 8 O -0.938 6.938 9 O -0.935 6.935 10 C -0.595 4.595 11 C -0.112 4.112 12 C 0.064 3.936 13 N -0.537 5.537 14 C 0.028 3.972 15 C 0.210 3.790 16 H 0.040 0.960 17 C -0.173 4.173 18 C -0.501 4.501 19 H 0.063 0.937 20 C 0.058 3.942 21 N -0.896 5.896 22 Si 0.898 3.102 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.276 1.276 26 C -0.026 4.026 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.030 0.970 39 H 0.017 0.983 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.007 0.993 43 H 0.088 0.912 44 H 0.030 0.970 45 H 0.261 0.739 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.868 17.304 12.780 25.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.109 4.109 3 C -0.088 4.088 4 C -0.156 4.156 5 C -0.049 4.049 6 C -0.739 4.739 7 S 2.674 3.326 8 O -0.935 6.935 9 O -0.933 6.933 10 C -0.727 4.727 11 C -0.152 4.152 12 C -0.066 4.066 13 N -0.261 5.261 14 C -0.120 4.120 15 C 0.104 3.896 16 H 0.057 0.943 17 C -0.232 4.232 18 C -0.539 4.539 19 H 0.081 0.919 20 C -0.143 4.143 21 N -0.535 5.535 22 Si 0.726 3.274 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.202 1.202 26 C -0.045 4.045 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.161 0.839 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.048 0.952 39 H 0.036 0.964 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.026 0.974 43 H 0.107 0.893 44 H 0.049 0.951 45 H 0.070 0.930 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.144 16.899 13.608 25.368 hybrid contribution -0.572 -0.139 -1.343 1.466 sum -13.717 16.761 12.265 24.890 Atomic orbital electron populations 1.20832 0.90401 1.03292 1.02791 1.20079 0.96663 0.93120 1.01050 1.21375 0.94485 0.97825 0.95125 1.21308 0.94438 0.98394 1.01425 1.21011 1.00560 0.91129 0.92182 1.30726 1.06022 1.19836 1.17345 1.05598 0.74589 0.74153 0.78238 1.93563 1.64952 1.61443 1.73557 1.93571 1.42614 1.83551 1.73532 1.30254 1.10790 1.08579 1.23029 1.21451 1.00444 0.92141 1.01123 1.21939 0.97216 0.94716 0.92777 1.62337 1.38794 1.00167 1.24786 1.22319 0.96121 0.96236 0.97332 1.19317 0.92236 0.97511 0.80514 0.94264 1.22411 0.98458 0.96685 1.05625 1.21089 1.30172 1.09145 0.93515 0.91890 1.24929 0.96475 0.97245 0.95670 1.69871 1.45507 1.39470 0.98643 0.86568 0.80816 0.83237 0.76822 1.20361 1.21431 1.20191 1.20887 0.92028 0.98944 0.92641 0.90808 0.91244 0.90992 0.85321 0.84949 0.83940 0.84490 0.84803 0.90351 0.89389 0.91133 0.95173 0.96421 0.90524 0.93704 0.97445 0.89329 0.95064 0.92959 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.01 36.00 0.36 -0.29 16 2 C -0.11 -0.87 5.88 -104.63 -0.62 -1.49 16 3 C -0.07 -0.51 9.70 -39.58 -0.38 -0.89 16 4 C -0.14 -1.06 10.05 -39.58 -0.40 -1.45 16 5 C -0.03 -0.28 9.47 -39.58 -0.37 -0.65 16 6 C -0.65 -6.63 5.66 -39.59 -0.22 -6.86 16 7 S 2.49 28.47 5.16 -107.50 -0.55 27.91 16 8 O -0.94 -13.20 17.13 -57.54 -0.99 -14.18 16 9 O -0.94 -13.32 17.12 -57.54 -0.98 -14.30 16 10 C -0.60 -6.01 5.98 37.16 0.22 -5.79 16 11 C -0.11 -1.56 5.14 -26.73 -0.14 -1.69 16 12 C 0.06 1.08 4.40 -3.82 -0.02 1.07 16 13 N -0.54 -11.32 4.74 -236.28 -1.12 -12.45 16 14 C 0.03 0.55 8.56 60.07 0.51 1.06 16 15 C 0.21 5.21 2.34 -68.87 -0.16 5.05 16 16 H 0.04 1.07 8.03 -51.93 -0.42 0.65 16 17 C -0.17 -4.10 8.28 37.16 0.31 -3.79 16 18 C -0.50 -13.56 7.89 -34.44 -0.27 -13.83 16 19 H 0.06 1.71 6.77 -52.48 -0.36 1.35 16 20 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 21 N -0.90 -25.28 11.32 55.43 0.63 -24.65 16 22 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C -0.03 -0.25 9.13 -39.59 -0.36 -0.61 16 27 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 28 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 29 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.14 1.16 7.56 -52.49 -0.40 0.76 16 33 H 0.14 1.11 8.14 -51.92 -0.42 0.69 16 34 H 0.13 1.08 8.14 -51.92 -0.42 0.66 16 35 H 0.08 1.06 6.55 -51.93 -0.34 0.72 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 1.19 8.00 -51.93 -0.42 0.77 16 38 H 0.03 0.51 6.94 -51.93 -0.36 0.14 16 39 H 0.02 0.33 6.51 -51.93 -0.34 0.00 16 40 H 0.08 1.60 6.42 -51.92 -0.33 1.27 16 41 H 0.04 0.74 6.47 -51.93 -0.34 0.41 16 42 H 0.01 0.14 6.75 -51.93 -0.35 -0.21 16 43 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 44 H 0.03 0.72 6.47 -51.93 -0.34 0.38 16 45 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.14 1.19 7.57 -52.48 -0.40 0.79 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -33.73 377.38 -11.19 -44.92 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.20 Total: -0.49 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: -1.63 Total: -28.68 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.49 Total: -37.10 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -1.97 Total: -28.48 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 28.47 SS G_CDS: -0.55 Total: 27.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.73 -11.19 -44.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155343648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.064 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds