Wall clock time and date at job start Tue Mar 31 2020 14:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47133 * 2 1 4 4 C 1.53008 * 109.46796 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46796 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46905 * 55.00565 * 5 4 3 7 7 N 1.46501 * 109.47561 * 295.00247 * 5 4 3 8 8 C 1.39925 * 119.99894 * 155.00151 * 7 5 4 9 9 C 1.38709 * 120.07983 * 359.72280 * 8 7 5 10 10 C 1.38218 * 120.01625 * 179.97438 * 9 8 7 11 11 C 1.38528 * 120.17682 * 0.02562 * 10 9 8 12 12 F 1.35100 * 119.92434 * 179.97438 * 11 10 9 13 13 C 1.38357 * 120.15767 * 0.02562 * 11 10 9 14 14 C 1.38722 * 119.98170 * 359.69755 * 13 11 10 15 15 O 1.35794 * 120.09185 * 180.29731 * 14 13 11 16 16 C 1.34800 * 116.99884 * 354.40487 * 15 14 13 17 17 H 1.08009 * 120.00007 * 5.06220 * 16 15 14 18 18 C 1.38627 * 120.00310 * 185.05995 * 16 15 14 19 19 N 1.31577 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00049 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47275 * 60.00099 * 20 18 16 22 22 H 1.48503 * 109.46849 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47376 * 300.00055 * 20 18 16 24 24 C 1.50698 * 109.46895 * 175.00114 * 5 4 3 25 25 O 1.20830 * 120.00026 * 119.99898 * 24 5 4 26 26 O 1.34234 * 120.00152 * 300.00348 * 24 5 4 27 27 C 1.45201 * 116.99714 * 179.97438 * 26 24 5 28 28 H 1.08997 * 109.47288 * 59.98973 * 1 2 3 29 29 H 1.08996 * 109.47675 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47042 * 299.99675 * 1 2 3 31 31 H 1.09003 * 109.46599 * 240.00205 * 2 1 3 32 32 H 1.08992 * 109.47326 * 120.00552 * 2 1 3 33 33 H 1.08999 * 109.46798 * 60.00792 * 3 2 1 34 34 H 1.08992 * 109.47465 * 300.00467 * 3 2 1 35 35 H 1.09003 * 109.46847 * 60.00259 * 4 3 2 36 36 H 1.08992 * 109.47415 * 300.00400 * 4 3 2 37 37 H 0.97000 * 119.99742 * 334.72768 * 7 5 4 38 38 H 1.08004 * 119.99291 * 0.02562 * 9 8 7 39 39 H 1.08001 * 119.90998 * 180.02562 * 10 9 8 40 40 H 1.08004 * 120.00865 * 180.02562 * 13 11 10 41 41 H 0.97000 * 120.00164 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.47251 * 60.00193 * 27 26 24 43 43 H 1.09007 * 109.46473 * 179.97438 * 27 26 24 44 44 H 1.08994 * 109.47232 * 299.99572 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 -0.0013 6 1 3.6459 3.4241 0.8406 7 7 3.6920 3.5396 -1.2531 8 6 3.5604 4.9318 -1.3029 9 6 3.7914 5.6931 -0.1666 10 6 3.6615 7.0682 -0.2174 11 6 3.3002 7.6902 -1.4013 12 9 3.1743 9.0346 -1.4451 13 6 3.0671 6.9379 -2.5388 14 6 3.2011 5.5578 -2.4967 15 8 2.9787 4.8177 -3.6133 16 6 2.5185 5.4710 -4.6989 17 1 2.4210 6.5466 -4.6808 18 6 2.1705 4.7626 -5.8385 19 7 2.2889 3.4524 -5.8603 20 14 1.5322 5.6680 -7.3425 21 1 2.5618 6.6272 -7.8169 22 1 1.2329 4.6898 -8.4190 23 1 0.2939 6.4066 -6.9872 24 6 5.5820 2.8867 0.1219 25 8 6.2588 3.3838 -0.7469 26 8 6.1680 2.3360 1.1967 27 6 7.6186 2.3733 1.2482 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.9329 0.9287 -0.8909 36 1 3.9338 0.9284 0.8890 37 1 3.5301 3.0084 -2.0483 38 1 4.0736 5.2112 0.7579 39 1 3.8422 7.6593 0.6682 40 1 2.7859 7.4254 -3.4606 41 1 2.0451 2.9565 -6.6576 42 1 7.9563 3.4094 1.2292 43 1 7.9619 1.8963 2.1663 44 1 8.0264 1.8423 0.3881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155419775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:16 Heat of formation + Delta-G solvation = -141.707641 kcal Electronic energy + Delta-G solvation = -28149.026713 eV Core-core repulsion = 23981.589681 eV Total energy + Delta-G solvation = -4167.437033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.07507 -40.50133 -39.15937 -37.25585 -36.16959 -36.09049 -34.20518 -32.32331 -31.26078 -29.31178 -28.32208 -27.60096 -25.86317 -25.41105 -22.98789 -22.08755 -21.32979 -20.94176 -20.20887 -18.21101 -17.81435 -17.39128 -16.76170 -16.50240 -16.04421 -15.72002 -15.23934 -15.14551 -14.84174 -14.33903 -14.19559 -14.04874 -13.80822 -13.63900 -13.35722 -13.29609 -13.07612 -12.97512 -12.59208 -12.18739 -12.12147 -11.94527 -11.68104 -11.47351 -11.45750 -11.18135 -11.14158 -10.94176 -10.86159 -10.72361 -10.58525 -10.51005 -10.40233 -10.24942 -9.60277 -9.36223 -8.86115 -7.77283 -6.56505 -6.48492 -4.04153 2.05159 2.19595 2.36843 2.77829 3.13620 3.14024 3.16487 3.82098 3.95301 4.44486 4.56852 4.85894 4.86551 4.97301 5.06461 5.07843 5.08845 5.14728 5.19034 5.24653 5.27085 5.44130 5.47534 5.54485 5.71717 5.73433 5.79970 5.86431 5.90232 6.00138 6.04944 6.18818 6.29013 6.37204 6.43980 6.46624 6.51722 6.76657 6.98735 7.07354 7.22339 7.52770 7.80841 7.93221 8.00750 8.26020 8.97364 9.62296 10.68660 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008233 B = 0.004620 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3399.958548 B = 6059.373406 C = 7675.599633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.119 4.119 4 C -0.119 4.119 5 C 0.174 3.826 6 H 0.113 0.887 7 N -0.715 5.715 8 C 0.152 3.848 9 C -0.141 4.141 10 C -0.197 4.197 11 C 0.092 3.908 12 F -0.156 7.156 13 C -0.241 4.241 14 C 0.130 3.870 15 O -0.173 6.173 16 C -0.387 4.387 17 H 0.091 0.909 18 C 0.042 3.958 19 N -0.862 5.862 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C 0.429 3.571 25 O -0.483 6.483 26 O -0.366 6.366 27 C 0.035 3.965 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.416 0.584 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.139 0.861 41 H 0.270 0.730 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 -5.799 14.090 15.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.157 4.157 5 C 0.063 3.937 6 H 0.131 0.869 7 N -0.350 5.350 8 C 0.053 3.947 9 C -0.164 4.164 10 C -0.218 4.218 11 C 0.072 3.928 12 F -0.135 7.135 13 C -0.263 4.263 14 C 0.074 3.926 15 O -0.077 6.077 16 C -0.463 4.463 17 H 0.109 0.891 18 C -0.163 4.163 19 N -0.497 5.497 20 Si 0.764 3.236 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C 0.268 3.732 25 O -0.367 6.367 26 O -0.282 6.282 27 C -0.060 4.060 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.254 0.746 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.157 0.843 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.115 0.885 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.227 -6.067 13.731 15.176 hybrid contribution 0.072 0.711 -1.147 1.351 sum 2.299 -5.356 12.584 13.868 Atomic orbital electron populations 1.21767 0.95891 1.01299 1.02089 1.21503 0.95957 0.96759 1.01812 1.21616 0.93545 0.97055 1.03431 1.21813 0.97217 0.92884 1.03817 1.20364 0.85729 0.96475 0.91100 0.86936 1.44074 1.76076 1.03517 1.11322 1.16996 1.02702 0.83335 0.91694 1.19886 1.07565 0.92820 0.96136 1.20255 1.10398 0.94402 0.96697 1.17231 1.04582 0.76100 0.94919 1.91383 1.94164 1.30706 1.97294 1.20798 1.13027 0.93480 0.98974 1.18524 0.97526 0.89428 0.87092 1.83891 1.72658 1.34691 1.16458 1.21241 1.43441 0.92410 0.89204 0.89147 1.25229 0.96815 0.95763 0.98475 1.70010 1.44539 1.05703 1.29442 0.85791 0.79415 0.78695 0.79652 1.19496 1.20301 1.19467 1.25328 0.93559 0.74929 0.79374 1.90715 1.65312 1.40712 1.39982 1.86522 1.23449 1.73526 1.44715 1.23194 0.77246 1.02651 1.02874 0.92358 0.93072 0.92886 0.91926 0.92288 0.91676 0.90471 0.90753 0.89546 0.74647 0.86678 0.86470 0.84321 0.91996 0.92107 0.88458 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.12 -1.23 5.93 -26.73 -0.16 -1.39 16 3 C -0.12 -1.33 5.10 -26.73 -0.14 -1.47 16 4 C -0.12 -1.34 4.72 -26.73 -0.13 -1.47 16 5 C 0.17 2.40 2.19 -69.08 -0.15 2.25 16 6 H 0.11 1.37 6.48 -51.93 -0.34 1.04 16 7 N -0.72 -12.86 4.21 -53.12 -0.22 -13.08 16 8 C 0.15 3.11 6.57 -83.52 -0.55 2.56 16 9 C -0.14 -2.54 9.16 -39.41 -0.36 -2.91 16 10 C -0.20 -3.63 10.02 -39.48 -0.40 -4.03 16 11 C 0.09 1.90 7.29 -39.43 -0.29 1.61 16 12 F -0.16 -3.12 17.26 2.25 0.04 -3.08 16 13 C -0.24 -5.47 9.14 -39.36 -0.36 -5.83 16 14 C 0.13 3.07 6.67 -38.93 -0.26 2.81 16 15 O -0.17 -4.68 9.00 0.00 0.00 -4.68 16 16 C -0.39 -10.55 9.49 30.88 0.29 -10.25 16 17 H 0.09 2.33 5.21 -52.48 -0.27 2.06 16 18 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 19 N -0.86 -24.26 13.67 55.48 0.76 -23.50 16 20 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 24 C 0.43 6.58 7.20 36.00 0.26 6.84 16 25 O -0.48 -9.41 16.11 -18.75 -0.30 -9.71 16 26 O -0.37 -4.61 10.37 -39.27 -0.41 -5.02 16 27 C 0.03 0.35 10.56 101.05 1.07 1.42 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.06 7.75 -51.93 -0.40 0.66 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.81 7.99 -51.93 -0.42 0.39 16 37 H 0.42 8.21 7.97 -40.82 -0.33 7.88 16 38 H 0.12 1.75 6.20 -52.48 -0.33 1.43 16 39 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.14 3.17 5.64 -52.48 -0.30 2.87 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 43 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 44 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -31.12 375.96 -6.55 -37.67 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -6.16 Total: 10.38 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -0.89 Total: -9.99 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.54 Total: -36.59 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.71 Total: -19.41 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.04 Total: -3.08 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.12 -6.55 -37.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155419775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.042 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds