Wall clock time and date at job start Tue Mar 31 2020 14:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47133 * 2 1 4 4 C 1.53008 * 109.46796 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46796 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46905 * 55.00565 * 5 4 3 7 7 N 1.46501 * 109.47561 * 295.00247 * 5 4 3 8 8 C 1.39925 * 119.99894 * 155.00151 * 7 5 4 9 9 C 1.38709 * 120.07983 * 359.72280 * 8 7 5 10 10 C 1.38218 * 120.01625 * 179.97438 * 9 8 7 11 11 C 1.38528 * 120.17682 * 0.02562 * 10 9 8 12 12 F 1.35100 * 119.92434 * 179.97438 * 11 10 9 13 13 C 1.38357 * 120.15767 * 0.02562 * 11 10 9 14 14 C 1.38722 * 119.98170 * 359.69755 * 13 11 10 15 15 O 1.35794 * 120.09185 * 180.29731 * 14 13 11 16 16 C 1.34800 * 116.99884 * 354.40487 * 15 14 13 17 17 H 1.08009 * 120.00007 * 5.06220 * 16 15 14 18 18 C 1.38627 * 120.00310 * 185.05995 * 16 15 14 19 19 N 1.31577 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00049 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47275 * 60.00099 * 20 18 16 22 22 H 1.48503 * 109.46849 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47376 * 300.00055 * 20 18 16 24 24 C 1.50698 * 109.46895 * 175.00114 * 5 4 3 25 25 O 1.20830 * 120.00026 * 119.99898 * 24 5 4 26 26 O 1.34234 * 120.00152 * 300.00348 * 24 5 4 27 27 C 1.45201 * 116.99714 * 179.97438 * 26 24 5 28 28 H 1.08997 * 109.47288 * 59.98973 * 1 2 3 29 29 H 1.08996 * 109.47675 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47042 * 299.99675 * 1 2 3 31 31 H 1.09003 * 109.46599 * 240.00205 * 2 1 3 32 32 H 1.08992 * 109.47326 * 120.00552 * 2 1 3 33 33 H 1.08999 * 109.46798 * 60.00792 * 3 2 1 34 34 H 1.08992 * 109.47465 * 300.00467 * 3 2 1 35 35 H 1.09003 * 109.46847 * 60.00259 * 4 3 2 36 36 H 1.08992 * 109.47415 * 300.00400 * 4 3 2 37 37 H 0.97000 * 119.99742 * 334.72768 * 7 5 4 38 38 H 1.08004 * 119.99291 * 0.02562 * 9 8 7 39 39 H 1.08001 * 119.90998 * 180.02562 * 10 9 8 40 40 H 1.08004 * 120.00865 * 180.02562 * 13 11 10 41 41 H 0.97000 * 120.00164 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.47251 * 60.00193 * 27 26 24 43 43 H 1.09007 * 109.46473 * 179.97438 * 27 26 24 44 44 H 1.08994 * 109.47232 * 299.99572 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 -0.0013 6 1 3.6459 3.4241 0.8406 7 7 3.6920 3.5396 -1.2531 8 6 3.5604 4.9318 -1.3029 9 6 3.7914 5.6931 -0.1666 10 6 3.6615 7.0682 -0.2174 11 6 3.3002 7.6902 -1.4013 12 9 3.1743 9.0346 -1.4451 13 6 3.0671 6.9379 -2.5388 14 6 3.2011 5.5578 -2.4967 15 8 2.9787 4.8177 -3.6133 16 6 2.5185 5.4710 -4.6989 17 1 2.4210 6.5466 -4.6808 18 6 2.1705 4.7626 -5.8385 19 7 2.2889 3.4524 -5.8603 20 14 1.5322 5.6680 -7.3425 21 1 2.5618 6.6272 -7.8169 22 1 1.2329 4.6898 -8.4190 23 1 0.2939 6.4066 -6.9872 24 6 5.5820 2.8867 0.1219 25 8 6.2588 3.3838 -0.7469 26 8 6.1680 2.3360 1.1967 27 6 7.6186 2.3733 1.2482 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.9329 0.9287 -0.8909 36 1 3.9338 0.9284 0.8890 37 1 3.5301 3.0084 -2.0483 38 1 4.0736 5.2112 0.7579 39 1 3.8422 7.6593 0.6682 40 1 2.7859 7.4254 -3.4606 41 1 2.0451 2.9565 -6.6576 42 1 7.9563 3.4094 1.2292 43 1 7.9619 1.8963 2.1663 44 1 8.0264 1.8423 0.3881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155419775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:16 Heat of formation + Delta-G solvation = -159.426910 kcal Electronic energy + Delta-G solvation = -28149.795079 eV Core-core repulsion = 23981.589681 eV Total energy + Delta-G solvation = -4168.205398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.67719 -41.73695 -40.78990 -38.65134 -37.60111 -37.26675 -35.38871 -34.27680 -32.46292 -30.98682 -29.32383 -28.92003 -27.33696 -26.98745 -24.11784 -23.52760 -22.91722 -21.83385 -21.45277 -20.03513 -19.43030 -18.64248 -18.02552 -17.91162 -17.27205 -17.04731 -16.94406 -16.47377 -16.27513 -15.96895 -15.61885 -15.44347 -15.26664 -15.01137 -14.88655 -14.38877 -14.25946 -14.04072 -13.86906 -13.59459 -13.56035 -13.22646 -13.12873 -12.93398 -12.65724 -12.58097 -12.24017 -12.15358 -12.14253 -11.97389 -11.80116 -11.76189 -11.52403 -11.49202 -11.35392 -10.81040 -10.77064 -9.47615 -8.46849 -8.15974 -6.09649 0.42074 0.56941 1.16380 1.34734 1.43709 1.48897 1.66921 2.15872 2.47553 2.75591 3.10655 3.27862 3.56665 3.60125 3.83020 3.86550 4.03031 4.15826 4.21446 4.26302 4.33743 4.34756 4.39184 4.45121 4.52222 4.70262 4.73082 4.83047 4.85358 4.94031 5.03742 5.04827 5.07956 5.17540 5.27590 5.34664 5.35601 5.39072 5.42387 5.46877 5.56192 5.91949 5.99535 6.35494 6.63791 6.80347 6.98370 7.73681 8.74596 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008233 B = 0.004620 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3399.958548 B = 6059.373406 C = 7675.599633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.115 4.115 4 C -0.110 4.110 5 C 0.170 3.830 6 H 0.141 0.859 7 N -0.718 5.718 8 C 0.155 3.845 9 C -0.135 4.135 10 C -0.167 4.167 11 C 0.072 3.928 12 F -0.153 7.153 13 C -0.248 4.248 14 C 0.088 3.912 15 O -0.212 6.212 16 C -0.410 4.410 17 H 0.093 0.907 18 C -0.013 4.013 19 N -0.910 5.910 20 Si 1.010 2.990 21 H -0.263 1.263 22 H -0.269 1.269 23 H -0.260 1.260 24 C 0.437 3.563 25 O -0.532 6.532 26 O -0.354 6.354 27 C 0.027 3.973 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.060 0.940 36 H 0.118 0.882 37 H 0.403 0.597 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.124 0.876 41 H 0.272 0.728 42 H 0.055 0.945 43 H 0.138 0.862 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 -5.789 17.403 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.152 4.152 4 C -0.148 4.148 5 C 0.061 3.939 6 H 0.158 0.842 7 N -0.350 5.350 8 C 0.054 3.946 9 C -0.158 4.158 10 C -0.186 4.186 11 C 0.051 3.949 12 F -0.132 7.132 13 C -0.269 4.269 14 C 0.035 3.965 15 O -0.119 6.119 16 C -0.486 4.486 17 H 0.110 0.890 18 C -0.212 4.212 19 N -0.547 5.547 20 Si 0.830 3.170 21 H -0.188 1.188 22 H -0.194 1.194 23 H -0.184 1.184 24 C 0.278 3.722 25 O -0.420 6.420 26 O -0.270 6.270 27 C -0.066 4.066 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.136 0.864 37 H 0.238 0.762 38 H 0.172 0.828 39 H 0.176 0.824 40 H 0.142 0.858 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.156 0.844 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.594 -6.057 17.131 18.354 hybrid contribution 0.089 0.729 -1.841 1.982 sum 2.683 -5.328 15.290 16.412 Atomic orbital electron populations 1.21775 0.95936 1.01889 1.01530 1.21495 0.95921 0.95939 1.02448 1.21564 0.93434 0.97764 1.02468 1.21814 0.97111 0.91211 1.04661 1.20749 0.85246 0.98021 0.89853 0.84204 1.44254 1.75609 1.02686 1.12410 1.17316 1.01297 0.84733 0.91291 1.20333 1.06157 0.92741 0.96601 1.20763 1.06249 0.94760 0.96864 1.17312 1.06138 0.76309 0.95163 1.91386 1.94268 1.30273 1.97299 1.20869 1.12928 0.93602 0.99506 1.19017 0.99627 0.90109 0.87717 1.83863 1.75028 1.35596 1.17396 1.21619 1.44087 0.92821 0.90105 0.88978 1.26349 0.96877 0.96636 1.01321 1.70137 1.46785 1.07341 1.30486 0.84770 0.79032 0.77587 0.75645 1.18815 1.19377 1.18418 1.25429 0.93834 0.73844 0.79121 1.90715 1.66401 1.43139 1.41780 1.86505 1.24992 1.72468 1.42995 1.23515 0.75531 1.02861 1.04718 0.94454 0.91946 0.91904 0.92968 0.89903 0.90071 0.93950 0.92087 0.86357 0.76199 0.82769 0.82409 0.85788 0.91891 0.92581 0.84355 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.91 71.98 0.71 -2.20 16 2 C -0.12 -2.24 5.93 30.59 0.18 -2.06 16 3 C -0.11 -2.43 5.10 30.60 0.16 -2.28 16 4 C -0.11 -2.28 4.72 30.60 0.14 -2.14 16 5 C 0.17 4.38 2.19 44.24 0.10 4.48 16 6 H 0.14 2.85 6.48 -2.39 -0.02 2.84 16 7 N -0.72 -26.08 4.21 -321.96 -1.36 -27.44 16 8 C 0.15 6.31 6.57 38.27 0.25 6.57 16 9 C -0.14 -4.51 9.16 22.38 0.21 -4.30 16 10 C -0.17 -5.59 10.02 22.33 0.22 -5.36 16 11 C 0.07 2.88 7.29 22.37 0.16 3.04 16 12 F -0.15 -5.92 17.26 44.97 0.78 -5.14 16 13 C -0.25 -11.59 9.14 22.41 0.20 -11.38 16 14 C 0.09 4.36 6.67 22.69 0.15 4.51 16 15 O -0.21 -12.26 9.00 -22.93 -0.21 -12.46 16 16 C -0.41 -23.73 9.49 67.91 0.64 -23.09 16 17 H 0.09 5.06 5.21 -2.91 -0.02 5.04 16 18 C -0.01 -0.74 5.49 84.82 0.47 -0.28 16 19 N -0.91 -54.07 13.67 21.61 0.30 -53.78 16 20 Si 1.01 43.23 29.55 68.60 2.03 45.26 16 21 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 24 C 0.44 12.55 7.20 71.24 0.51 13.07 16 25 O -0.53 -20.52 16.11 21.95 0.35 -20.17 16 26 O -0.35 -7.80 10.37 -51.46 -0.53 -8.33 16 27 C 0.03 0.48 10.56 113.37 1.20 1.67 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 34 H 0.04 1.20 7.75 -2.39 -0.02 1.18 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.12 1.75 7.99 -2.39 -0.02 1.73 16 37 H 0.40 16.87 7.97 -92.71 -0.74 16.13 16 38 H 0.15 3.93 6.20 -2.91 -0.02 3.91 16 39 H 0.16 4.08 8.06 -2.91 -0.02 4.05 16 40 H 0.12 6.01 5.64 -2.91 -0.02 6.00 16 41 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 43 H 0.14 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.05 1.03 8.13 -2.39 -0.02 1.01 16 Total: -1.00 -72.77 375.96 6.96 -65.81 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: 0.29 Total: 36.00 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 5.31 Total: -19.75 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -1.06 Total: -81.21 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.39 Total: -40.97 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.78 Total: -5.14 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -72.77 6.96 -65.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155419775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.614 kcal (2) G-P(sol) polarization free energy of solvation -72.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds