Wall clock time and date at job start Tue Mar 31 2020 14:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47217 * 2 1 4 4 C 1.53000 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46889 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47234 * 305.00095 * 5 4 3 7 7 N 1.46502 * 109.47006 * 65.00294 * 5 4 3 8 8 C 1.39928 * 119.99817 * 204.99944 * 7 5 4 9 9 C 1.38716 * 120.08191 * 359.97438 * 8 7 5 10 10 C 1.38209 * 120.01917 * 179.97438 * 9 8 7 11 11 C 1.38534 * 120.17487 * 0.02562 * 10 9 8 12 12 F 1.35098 * 119.92087 * 180.02562 * 11 10 9 13 13 C 1.38354 * 120.15874 * 0.02562 * 11 10 9 14 14 C 1.38722 * 119.98146 * 359.70110 * 13 11 10 15 15 O 1.35795 * 120.08881 * 180.29551 * 14 13 11 16 16 C 1.34805 * 116.99969 * 354.40648 * 15 14 13 17 17 H 1.07994 * 119.99771 * 5.05881 * 16 15 14 18 18 C 1.38627 * 119.99556 * 185.06187 * 16 15 14 19 19 N 1.31586 * 119.99442 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00532 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46692 * 89.99920 * 20 18 16 22 22 H 1.48493 * 109.47354 * 209.99977 * 20 18 16 23 23 H 1.48496 * 109.46748 * 330.00403 * 20 18 16 24 24 C 1.50697 * 109.47081 * 185.00304 * 5 4 3 25 25 O 1.20834 * 120.00003 * 240.00140 * 24 5 4 26 26 O 1.34228 * 120.00493 * 60.00119 * 24 5 4 27 27 C 1.45198 * 117.00291 * 180.02562 * 26 24 5 28 28 H 1.09004 * 109.47547 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47146 * 299.99933 * 1 2 3 30 30 H 1.08998 * 109.47344 * 59.99793 * 1 2 3 31 31 H 1.08997 * 109.47146 * 240.00067 * 2 1 3 32 32 H 1.08996 * 109.46839 * 120.00199 * 2 1 3 33 33 H 1.08997 * 109.47008 * 59.99982 * 3 2 1 34 34 H 1.08998 * 109.47132 * 300.00336 * 3 2 1 35 35 H 1.08997 * 109.47154 * 60.00262 * 4 3 2 36 36 H 1.08998 * 109.47663 * 300.00201 * 4 3 2 37 37 H 0.96997 * 120.00000 * 25.00194 * 7 5 4 38 38 H 1.08009 * 119.99019 * 0.02562 * 9 8 7 39 39 H 1.07995 * 119.91431 * 180.02562 * 10 9 8 40 40 H 1.07999 * 120.00925 * 180.02562 * 13 11 10 41 41 H 0.96999 * 119.99604 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.46816 * 179.97438 * 27 26 24 43 43 H 1.09000 * 109.47142 * 299.99828 * 27 26 24 44 44 H 1.08998 * 109.47246 * 59.99970 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6458 3.4235 -0.8423 7 7 3.6920 3.5406 1.2513 8 6 3.5603 4.9328 1.3000 9 6 3.7973 5.6938 0.1647 10 6 3.6664 7.0688 0.2142 11 6 3.2991 7.6912 1.3960 12 9 3.1721 9.0356 1.4384 13 6 3.0620 6.9394 2.5330 14 6 3.1859 5.5585 2.4893 15 8 2.9479 4.8180 3.6024 16 6 2.7084 5.4911 4.7456 17 1 2.6308 6.5681 4.7319 18 6 2.5619 4.8006 5.9387 19 7 2.3287 5.4577 7.0546 20 14 2.6955 2.9376 5.9623 21 1 4.1086 2.5456 6.1966 22 1 1.8441 2.3939 7.0507 23 1 2.2403 2.3922 4.6583 24 6 5.5820 2.8866 -0.1233 25 8 6.2589 3.3845 0.7451 26 8 6.1679 2.3351 -1.1976 27 6 7.6185 2.3723 -1.2493 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9337 0.9285 -0.8891 36 1 3.9330 0.9287 0.8908 37 1 3.5264 3.0097 2.0460 38 1 4.0835 5.2116 -0.7584 39 1 3.8509 7.6595 -0.6709 40 1 2.7753 7.4272 3.4530 41 1 2.2265 4.9746 7.8896 42 1 7.9617 1.8939 -2.1666 43 1 7.9562 3.4085 -1.2312 44 1 8.0264 1.8421 -0.3887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155419869.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:19 Heat of formation + Delta-G solvation = -139.441465 kcal Electronic energy + Delta-G solvation = -28266.584322 eV Core-core repulsion = 24099.245558 eV Total energy + Delta-G solvation = -4167.338764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.12801 -40.62075 -39.33668 -37.42611 -36.31238 -36.23138 -34.35139 -32.42903 -31.40536 -29.53859 -28.43296 -27.76112 -26.01472 -25.35156 -23.09594 -22.10364 -21.43496 -21.07195 -20.31001 -18.18990 -17.98596 -17.53384 -16.88141 -16.65556 -16.15704 -15.83706 -15.41485 -15.28723 -14.91933 -14.41598 -14.16961 -14.05095 -13.97455 -13.79587 -13.46737 -13.31625 -13.21964 -13.02125 -12.68702 -12.36119 -12.20728 -12.20053 -11.85149 -11.62448 -11.57329 -11.31219 -11.27980 -11.00562 -10.89170 -10.81728 -10.67128 -10.56718 -10.37861 -10.36538 -9.58160 -9.48718 -8.91707 -7.89813 -6.72207 -6.44721 -4.09472 1.94530 2.06592 2.25419 2.66312 3.16684 3.21636 3.30462 3.66134 4.17730 4.33001 4.42978 4.59668 4.72281 4.78917 4.94320 5.00680 5.02982 5.04690 5.08202 5.10517 5.14119 5.30879 5.39648 5.43415 5.58618 5.59918 5.68973 5.74066 5.76019 5.86951 5.94768 6.05810 6.13476 6.20098 6.28777 6.35858 6.39516 6.67229 6.90355 6.95677 7.36263 7.54885 7.74562 7.86822 7.97531 8.06569 8.89461 9.47460 10.62973 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007604 B = 0.005267 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3681.571550 B = 5315.168107 C = 6936.705954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.120 4.120 4 C -0.121 4.121 5 C 0.173 3.827 6 H 0.116 0.884 7 N -0.719 5.719 8 C 0.151 3.849 9 C -0.138 4.138 10 C -0.190 4.190 11 C 0.093 3.907 12 F -0.153 7.153 13 C -0.226 4.226 14 C 0.135 3.865 15 O -0.214 6.214 16 C -0.384 4.384 17 H 0.107 0.893 18 C 0.064 3.936 19 N -0.877 5.877 20 Si 0.904 3.096 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.260 1.260 24 C 0.429 3.571 25 O -0.483 6.483 26 O -0.365 6.365 27 C 0.035 3.965 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.410 0.590 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.146 0.854 41 H 0.280 0.720 42 H 0.098 0.902 43 H 0.061 0.939 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 -10.229 -17.751 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.157 4.157 4 C -0.159 4.159 5 C 0.063 3.937 6 H 0.133 0.867 7 N -0.354 5.354 8 C 0.052 3.948 9 C -0.162 4.162 10 C -0.210 4.210 11 C 0.072 3.928 12 F -0.132 7.132 13 C -0.247 4.247 14 C 0.081 3.919 15 O -0.120 6.120 16 C -0.460 4.460 17 H 0.124 0.876 18 C -0.139 4.139 19 N -0.514 5.514 20 Si 0.730 3.270 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C 0.268 3.732 25 O -0.367 6.367 26 O -0.281 6.281 27 C -0.060 4.060 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.247 0.753 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.163 0.837 41 H 0.090 0.910 42 H 0.116 0.884 43 H 0.080 0.920 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.692 -10.306 -17.331 20.342 hybrid contribution 0.411 -0.415 0.661 0.882 sum 3.103 -10.721 -16.669 20.061 Atomic orbital electron populations 1.21771 0.95796 1.01405 1.02120 1.21513 0.96033 0.96691 1.01873 1.21629 0.93541 0.97113 1.03463 1.21829 0.97210 0.92907 1.03913 1.20378 0.85893 0.96430 0.91007 0.86682 1.44035 1.76524 1.03523 1.11296 1.16977 1.02377 0.83293 0.92197 1.19897 1.07366 0.92835 0.96057 1.20328 1.09472 0.94387 0.96834 1.17244 1.04418 0.76326 0.94796 1.91401 1.94082 1.30495 1.97256 1.20940 1.11074 0.93422 0.99282 1.18212 0.97672 0.89264 0.86729 1.83481 1.78562 1.34747 1.15161 1.20720 1.49492 0.93799 0.81963 0.87588 1.24441 0.95835 1.00169 0.93498 1.69656 1.46411 1.36719 0.98658 0.86206 0.78589 0.83668 0.78530 1.19923 1.20770 1.18405 1.25254 0.93488 0.75015 0.79452 1.90722 1.65293 1.40645 1.40012 1.86514 1.23571 1.73412 1.44645 1.23209 0.77074 1.02740 1.02937 0.92982 0.92452 0.92745 0.92114 0.92041 0.90697 0.91425 0.89321 0.90876 0.75274 0.86483 0.86207 0.83652 0.91012 0.88381 0.92011 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.09 5.93 -26.73 -0.16 -1.25 16 3 C -0.12 -1.18 5.10 -26.73 -0.14 -1.32 16 4 C -0.12 -1.20 4.72 -26.73 -0.13 -1.33 16 5 C 0.17 2.18 2.19 -69.08 -0.15 2.03 16 6 H 0.12 1.26 6.49 -51.93 -0.34 0.92 16 7 N -0.72 -11.87 4.21 -53.11 -0.22 -12.10 16 8 C 0.15 2.88 6.57 -83.52 -0.55 2.33 16 9 C -0.14 -2.35 9.16 -39.42 -0.36 -2.71 16 10 C -0.19 -3.34 10.02 -39.48 -0.40 -3.73 16 11 C 0.09 1.86 7.29 -39.43 -0.29 1.58 16 12 F -0.15 -3.03 17.26 2.25 0.04 -2.99 16 13 C -0.23 -5.04 9.14 -39.36 -0.36 -5.40 16 14 C 0.14 3.05 6.67 -38.93 -0.26 2.79 16 15 O -0.21 -5.36 7.83 -0.02 0.00 -5.36 16 16 C -0.38 -10.61 9.95 30.88 0.31 -10.30 16 17 H 0.11 3.04 5.44 -52.49 -0.29 2.76 16 18 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 19 N -0.88 -25.12 13.96 55.48 0.77 -24.35 16 20 Si 0.90 21.05 28.62 -169.99 -4.86 16.19 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 24 C 0.43 6.11 7.18 36.00 0.26 6.36 16 25 O -0.48 -8.86 16.11 -18.76 -0.30 -9.16 16 26 O -0.36 -4.27 10.37 -39.25 -0.41 -4.68 16 27 C 0.03 0.32 10.56 101.05 1.07 1.39 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.90 7.75 -51.93 -0.40 0.50 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.72 7.99 -51.93 -0.42 0.31 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.41 7.21 7.97 -40.82 -0.33 6.89 16 38 H 0.12 1.64 6.20 -52.48 -0.33 1.32 16 39 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.15 3.43 5.64 -52.49 -0.30 3.14 16 41 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 44 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -31.01 374.82 -6.39 -37.40 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.17 Total: 8.28 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -0.88 Total: -8.87 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.55 Total: -36.44 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.71 Total: -19.20 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.04 Total: -2.99 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.86 Total: 16.19 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.01 -6.39 -37.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155419869.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.045 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds